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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0030300 |
| Transcript ID | LotjaGi4g1v0030300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270; TrEMBL-Plants: tr|I3SMA9|I3SMA9_LOTJA WAT1-related protein; Found in the gene: LotjaGi4g1v0030300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3743753..3746409) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTCTGAATCCACATATATTGTAGTCGCTAGTCCCCTCCTATAAATACCCATTTTGCTGAGCTACAATTTCAACACAT TCAATTCGTCTTCTCTGTACTTCCTTTTATCTTAAAACACTCTTCTAGCTAGCTAGCACGCTTATAAAAAAAAAAACACT CTTGAAGCTAGCATCATGGGGAAGATAATGGAAGGACTGAAACCAGCACTACTCATGGTGTTTGTGCAGATTGCATATGC TGCAGTGAATATCGTCTACAAGCTCGCCATTAATGATGGAATGAGCATGACAGTCGCCACTGCCTACCGGCTAATTTTCG CATCAGCTTGCACGGTTCCACTTGCTCTTATCTTTGATAGGTAATTGTTGATGATTTTCCTCGCGCATTTTATTTGCTCT CACACTTAGTCATTTAAACAACTCCTATTACTACTCACTAATATGATACATTGCTAGAAATATTTTCCATTCATGGGATT TTATCTATCTATACGAAAATGTTAAATTTGTACATTCAATTTCTAGCGTGTTTAACTTATTATATTTTTTTTCTTGAAAT TTAGGAGAGAATTATTTAAAAACCAATATATATGTCCTTAATTTTAAAAGCATGTAGTATTTTTTAAGAGTTTAATTTTT ATACACGGTCATGAGTTTGAACAGTTACATGATTCAGTAATTATTTTAGTTAAATTTAAGATTTATTTTTCTGTTGTGAT AAACAATAATTATAAATTAGTGTAATTTCTTACATTAGTAGTACATATACATGAAATCCAAGGAAATGCATATTTAGCCA GAAATCAAATCCATGCATGGTTTGCTAGCTGTCCACGTACGAAGAATTATTGTGTCTTCAGCTGTTGTTGGACCATCAAT CGTCACATAATCATTAGCGTGTTTGAATATATAAATCTACCAAAGTCCACTTCTTTAATCATAAAAGATATTCTTACTAT TTGTTTATTTTGATTCTATAGCCTTTGACCATGAGACTCACGCATTTGAATAGCGAGGCTAAAATGATTTTGCCTTTTTT TTCTCTTTCTATGCAGGAAGAAGAGGCCAAAAATTACTTGGAGGGTGCTTGTTTTGGCATTTCTTTGTGGAATGTTTGGG TACGTAAATTATTCACCTTATTATTTTCAGCCAATTTATAGTGTATATAATTGTTATAAGGTAATCAAATAACAATACAC TAATTATAATATTCTATTTCAGGGGAAGTTTATTTCTAAACCTTTACGCTGTGGGTTTGGGCATGACATCAGCAACGTTT ATGTTGGCCGTGGTGAACCTTATTCCAGGCATTACCTTCATCTTGGCCACATGTTTCGGGTATATATATAAGAGTAGCAT TTTTAATCTAAGTTACATAACTTACATTAATATTAAATGATTATATAACGTACATTAATATACTTAATTTTAATTTTCTG TAGATTGGAAAAATTAAATTTGGGAGCAGCAGCAGGTAAGGCCAAGGTGATAGGAACAATTGTTGGAATTAGTGGAGCAA TGGTGTTGACCTTTCTCAAAGGGTTCGAAATCAATATTTTGTCCTCCAAACTTGACCTTATGCATCCGCATCATGACCAA AGTGGCCATATAGTGTCGCAACATGTCGACTTTAGCAACAAAGCATTAGGGATTCCTTGCGCCTTAGCAAGTTGCATCTC TTTCTCTTTGTGGTTAATCACTCAAGCGAAGATGAACCAAGAATACCCGAGCCCTCACTCAAGCTCAGCATTGATGTGTA TAATGGGTGCCTTACAATCCACTATTATTGCTCTTTGTTTTGAGAGGGATTGGAGTCAATGGAAGTTGGGGTTCGATATC AGACTTCTAACCGTGGCTTATTCGGTAATATGCTATCTAAGTTATTACAAGTTTTTTATATCTGTTGTGTATATTCTAAA GTTAACCAATTGAGTAATTTTTCATACAGGGAATTGTGGGCTCTGGTTTGGTGGTTATTGTTATTGCATGGTGTGTAAAG ATGAGAGGCCCTCTATTCGCGTCTATTTTCAATCCTCTACAACTCTTGCTTGTCGCCATCGCTGCTTACTTATTGTTGGA TGAGAAGTTATATTTAGGAAGGTAGAGTATAAATCTTGACATATATATTCACATATTCATGTTTTTAATTTTTTATTTGG TGGTCATGATGAGTTGACTTGATTTGACTAAGTTTCGTTGTTTCATTGTATGTTATGTAGTGTGCTTGGAGCAGTGCTGA TTGTTATTGGCCTATACGCTGTACTTTGGGGTAAGAGCAAAGAAATGAAAACGAAGACTCAGTTAATGCCAGTACAAAAC ACCACAGAGTCCCAAGTTATTGAGGTTGCTGTTATTTCCACGCCCGTAAATCAACATAAATGCGTCCACTGCAATCAGTG TCAAGTTAGTGCAACGTCGAATGTTGCTGATGACCAATCACTCTCTATCGAAAAATGAAAAATGGATATTTTTTTTAGAA AAGTGGATATTATGTTTATTTATTCTTTCGATAAGCCAAAAAAAAGTGGATATTATGTAAACGATTATTTTTGTGAATTA TGTAGACATGAAGAGAAGAGAAATAAATTATGGATACTAATTATATGTGATCGATGTGATAAAGAAAAATTAAATAAATG ATGTATATGAGTTCTGC
CDS sequence (LotjaGi4g1v0030300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGATAATGGAAGGACTGAAACCAGCACTACTCATGGTGTTTGTGCAGATTGCATATGCTGCAGTGAATATCGT CTACAAGCTCGCCATTAATGATGGAATGAGCATGACAGTCGCCACTGCCTACCGGCTAATTTTCGCATCAGCTTGCACGG TTCCACTTGCTCTTATCTTTGATAGGAAGAAGAGGCCAAAAATTACTTGGAGGGTGCTTGTTTTGGCATTTCTTTGTGGA ATGTTTGGGGGAAGTTTATTTCTAAACCTTTACGCTGTGGGTTTGGGCATGACATCAGCAACGTTTATGTTGGCCGTGGT GAACCTTATTCCAGGCATTACCTTCATCTTGGCCACATGTTTCGGATTGGAAAAATTAAATTTGGGAGCAGCAGCAGGTA AGGCCAAGGTGATAGGAACAATTGTTGGAATTAGTGGAGCAATGGTGTTGACCTTTCTCAAAGGGTTCGAAATCAATATT TTGTCCTCCAAACTTGACCTTATGCATCCGCATCATGACCAAAGTGGCCATATAGTGTCGCAACATGTCGACTTTAGCAA CAAAGCATTAGGGATTCCTTGCGCCTTAGCAAGTTGCATCTCTTTCTCTTTGTGGTTAATCACTCAAGCGAAGATGAACC AAGAATACCCGAGCCCTCACTCAAGCTCAGCATTGATGTGTATAATGGGTGCCTTACAATCCACTATTATTGCTCTTTGT TTTGAGAGGGATTGGAGTCAATGGAAGTTGGGGTTCGATATCAGACTTCTAACCGTGGCTTATTCGGGAATTGTGGGCTC TGGTTTGGTGGTTATTGTTATTGCATGGTGTGTAAAGATGAGAGGCCCTCTATTCGCGTCTATTTTCAATCCTCTACAAC TCTTGCTTGTCGCCATCGCTGCTTACTTATTGTTGGATGAGAAGTTATATTTAGGAAGTGTGCTTGGAGCAGTGCTGATT GTTATTGGCCTATACGCTGTACTTTGGGGTAAGAGCAAAGAAATGAAAACGAAGACTCAGTTAATGCCAGTACAAAACAC CACAGAGTCCCAAGTTATTGAGGTTGCTGTTATTTCCACGCCCGTAAATCAACATAAATGCGTCCACTGCAATCAGTGTC AAGTTAGTGCAACGTCGAATGTTGCTGATGACCAATCACTCTCTATCGAAAAATGA
Protein sequence (LotjaGi4g1v0030300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKIMEGLKPALLMVFVQIAYAAVNIVYKLAINDGMSMTVATAYRLIFASACTVPLALIFDRKKRPKITWRVLVLAFLCG MFGGSLFLNLYAVGLGMTSATFMLAVVNLIPGITFILATCFGLEKLNLGAAAGKAKVIGTIVGISGAMVLTFLKGFEINI LSSKLDLMHPHHDQSGHIVSQHVDFSNKALGIPCALASCISFSLWLITQAKMNQEYPSPHSSSALMCIMGALQSTIIALC FERDWSQWKLGFDIRLLTVAYSGIVGSGLVVIVIAWCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLGAVLI VIGLYAVLWGKSKEMKTKTQLMPVQNTTESQVIEVAVISTPVNQHKCVHCNQCQVSATSNVADDQSLSIEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 351 | 346 | 1.1E-179 | ||
| PANTHER | 6 | 351 | 346 | 1.1E-179 | – | |
| Pfam | 9 | 150 | 142 | 2.4E-11 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 43 | 60 | 18 | - | – | |
| SUPERFAMILY | 44 | 144 | 101 | 7.19E-6 | – | |
| Phobius | 61 | 71 | 11 | - | – | |
| Phobius | 72 | 94 | 23 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 95 | 99 | 5 | - | – | |
| Phobius | 100 | 123 | 24 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 124 | 134 | 11 | - | – | |
| Phobius | 135 | 153 | 19 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 154 | 189 | 36 | - | – | |
| TMHMM | 189 | 207 | 19 | - | – | |
| Pfam | 190 | 328 | 139 | 1.1E-15 | ||
| Phobius | 190 | 208 | 19 | - | – | |
| Phobius | 209 | 219 | 11 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 220 | 239 | 20 | - | – | |
| Phobius | 240 | 258 | 19 | - | – | |
| SUPERFAMILY | 247 | 333 | 87 | 4.45E-11 | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 259 | 277 | 19 | - | – | |
| Phobius | 278 | 283 | 6 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 284 | 303 | 20 | - | – | |
| Phobius | 304 | 308 | 5 | - | – | |
| Phobius | 309 | 328 | 20 | - | – | |
| TMHMM | 310 | 329 | 20 | - | – | |
| Phobius | 329 | 391 | 63 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0030300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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