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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0030700 |
| Transcript ID | LotjaGi4g1v0030700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270; TrEMBL-Plants: tr|I3SMA9|I3SMA9_LOTJA WAT1-related protein; Found in the gene: LotjaGi4g1v0030700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3813673..3817601) extracted from Lotus japonicus Gifu genome v1.2.
CATAAACTTTTTAAGTCTGCTAAAACATCATCCCAAAAACATTTGTCTACAACTCTACATTAAATTATAGGTAAAAGAGT ACGATAACAGTCAAGGGGTGATGGAACACTTTTTCAACCTATTCTATAAAAACTCCTTTGCTGAGCTACAATTTCCACAC ACCTTCATCTTCTCTCTTTATTTTATTTGATAGAAAAACTCCATTGTAGTTATAGCTAGCACCATGAACGGTGTGTGCAA TTTAATGCAAGGGCTGAAACCAGCGTTACTAATGGTGTTTACGCAGATTGCATATGCTGCGGCGAATATCGTCTACAAGC TCGCCATAAATGATGGAATGAGCATGAGAGTTGCAACTGCTTATCGCCTCATTTTCGCATCGGCTTTCACAGTTCCACTT GCTCTTATCCTTGATAGGTTGTTGTTTATTATAATTTCCTTGCACCTTTTTTTGCTTTTACACAAAAAATGTGTTTTCAT TTCATGAACTTCTATATCAAAATGTTAACGTACATTCAATATAGCATGTTAAACTTCGTTTTTTCTTTCATTTTTCGAGA GTTAAAAAACCTTAATTTATTTTTTAGTGGGGCTCAATCCCTACATAATACATTCGAAAGATGATAAAATTAGTATTAGT TTTTACTCAATCTAAAATACCGAATTGTCAGTATTTGAAAAGTGACTGAATACGAAGTCGTTTAAAAATTATATATTTTG TTAGAAGGGCATTTTCTAAACATTTTTGGTAAAAATATTATTGTGGAAAAGAAAAAGTGTGCCTAAAATTAAAGATTTCT TGTGCAAAAGTACTTTTTTGGAAATGTTTTTTTCCAACCATTTCCTCACATTCACTTTCACGGGTCAGTTTTTATTTTGA CATTTAAATATAGTTTATATTGTTCATTTATACAATATATTTTACTCCATCTTTCATCTTGTCTTATAATGGGTCTCTTC AAATTTATATTCTAGGATGATGTAATGAAAATGTACAAGGAGGAGTCTGAAACACAATGTTGTTAAATTAAAGTTTTCTT AAGGTTGCAAAACACGTTATTCAAAAAGTTTTTTTTTTTGATATAATTTTAAAAATTGTTTCTAATTTTTTTAAACATCA AAATTAAAACAGAAATCAAACAAGCCATATATCCTCTATATATATAAAATAATTTAGCACAATCAATTCTTATATCATAA AAGTTTTTAAAGGGATTATCTTATGATTATGTTTTTCATTAACTTGAGATGGACATCTAAGGGAAAATTGAGGAAAAATA GGAGATTTAGAAATTAGGAAAACCCAAAATAAAACGAAAGAGATAGAAGACAAGAAAGAAGTAAAACATGCGATAAGTAG ATTAAAGGTTAAAGTACCATTAAAATATCTAATTATGGATTTGAAAATGAAAGACGTGGGCCTTTCTACTAGTAAGTCGA ACTTTTTAATTTTATTTATATTGAAGAGTGCAACCGGTGTTCAACATGTCTAAAACACCTGAACAATATTTCAAAATTCT CGAATTTTATTATTGGTTTTGTAAAAATAATAAGGTTTGTCTTTTACATTCCACTATTGCCTTTTACGTCACGTCTCTAT TTTCGGGTCTTTCTCTTACTTTTCGTATTGCTCTTAATCACTTTCTCTTTTTTACATATTTGTTTTTCTAACTAAAAAAA TCACTTTCTCTCACTTTCTCTTTGAGATGAATCCAACTAAATGACCTGATGTGATTTCTGTCAAATAGTAACATAAGAGA CAAACATTGTATAGCGTTTCAACGTGAGACTCACGCATTATATAGATTAGACTAACAAGGTCAAAATGGTTTTGCATTTT TTCTCTACACAGGAAGAAGAGGCAAAAAATTACTTGGAGGGTGATTTTTATGGCATTTCTCTGTGGATTGTTTGGGTATG CTACCTAAATCATTCACCCTTTTTCCACCTTATATAAAGTATCCTTGTTATAAGGTAATTAATTAACAATATACTATATG GGTATATGCAATGTTCCATTTCAGTGGAAGTTTATTTCTAAACCTTTACGCCGTTGGTTTGGCTTTGACCTCTGCAACGT TTATGTTGGCGGTGTTAAACCTTGTTCCAGGCGTTACATTCATCATGGCCACTTCTTTTGGGTACGTACTCTCCCTACAC GTACACTTAGATATATATTTTATCTTTTTTTATGATGTTAGAAAATAATTAAATCAATGAATTTTCAATTACTATTTAGT TTGGTTGTAGAAACATGTACTTGCAAACAATCAGTGGCCACTGGCCATGAGGATTGAAGGCTTGTAAAGGCAAGAGTGAC TAGGATGCCATTATAAAAAGATTAAAAAAAGTATTAATCCGTGTTTTATAAGTGATAATTAAATATAATGACGATGTAGC AACTAGCAACTAAGTTTTGTATGAGATAATATAGACATCAAAGAGTAGATTAGCACTCCTATACACCGCACAAAGGTAAT TAATATTAAATGATAGATAGTGTTTCACATGCACTCTCAATTTGCAATGCTTTTAATCAAAATATAATACTAATTTGTGC CCATTTTACTGTTATACTTTTGATTTTTCTATAGATTGGAAAAACTGAATTTTGGAGCAGCAGAAGGGAAGGCCAAGGTG ATAGGAACAGTTGTTGGAATTAGTGGTGCAATGTTGATTACCTTTCTCAAAGGGTTTGAAATTAATATTTTATCTTCCAA AATTGACCTTATGCATCCACATCATGACCAAAGTGGGCATATGATGCGGCCTCATGTAGATTTTAGTAATAAACTATTAG GGGTTCCATGCGCCTTAGCAAGTTGCTGCTCTTTCTCTTTGTGGTTAATCATTCAGGTTAGCTTATTCCTTAATTATGAA TCGAATGTAGTGCACTTGTATATCATTTAGTTATGATTGAAGTCATCTTATATATGAATACATTTAATTGCACAACGTAC AGGCTAAGATGAACCAAGAATATCCAAGCTATCACTCAAGCTCAGCTTTGATGTCAACAATGGGAGCAATACAATCTACT ATTATTGCTCTTTGTGTTGATAGAGATTGGAGCCAATGGAAGTTAGGTTACAATATCAGGCTGCTAACCGTGGCTTATTC GGTATGCTCTGAAGTTAATGAAAATATTAAAAAGCTCAAAGGAAGCACATATATTTGACTATGGGATTAAAATGTTAACT GCAGGGAATTGTGGCTTCTGGTATGGTGGTTATTGTAATTTCGTGGTGCGTGAAGATGAGAGGTCCTCTATTTGCATCCA TCTTTAATCCTCTACAACTTTTGCTTGTGGCAATCGCTGCTTATTTATTATTGGATGAGAAATTATATTTAGGAAGGTAT ACATATATATAGTCTAACTCTGTTTCACAATATATTTAATTTAATTTAATTTGTTCATCATGTTTAATTTATGCTTTTTA TTTATTATTTTGGGTTCATGATTTGAATTAATTGAGTTTCGTTGTATATTATATAGTGTGGTTGGAGCAGTACTGATCGT GTGTGGCTTATATGGTGTGCTATGGGGTAAGAGCAGAGAAATGAAAAAGAAGACTCAACTAGTGCCATTAGATCAAAACA CCACGGAGCCCGAAGTCATTGAAGTTACTGTTATGTCCACGCCTGAAAATTGTGACAAATGTGTCCAGAGCTACCAAAGT CAAACTAGTTAGTGATAAATTTGTGGGTAATTTGATTGTAGTTGATTCGTGATTTTGGGTTTTAGCTAGTAAGAGTGTAG TAACTGTAACTTCTACATTGACATTTTATAGTATTTCATTATTATTTTACTACATTATAAAAAATGAAAAACAATGCGAT CGACCCATTGTTTCTTATATCTTAGTAAAAGAACACTAGTGGCACCACTAGCTAGTTGCTTGAGAAACATAACACTTGCA AACAATTAT
CDS sequence (LotjaGi4g1v0030700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGGTGTGTGCAATTTAATGCAAGGGCTGAAACCAGCGTTACTAATGGTGTTTACGCAGATTGCATATGCTGCGGC GAATATCGTCTACAAGCTCGCCATAAATGATGGAATGAGCATGAGAGTTGCAACTGCTTATCGCCTCATTTTCGCATCGG CTTTCACAGTTCCACTTGCTCTTATCCTTGATAGGAAGAAGAGGCAAAAAATTACTTGGAGGGTGATTTTTATGGCATTT CTCTGTGGATTGTTTGGTGGAAGTTTATTTCTAAACCTTTACGCCGTTGGTTTGGCTTTGACCTCTGCAACGTTTATGTT GGCGGTGTTAAACCTTGTTCCAGGCGTTACATTCATCATGGCCACTTCTTTTGGATTGGAAAAACTGAATTTTGGAGCAG CAGAAGGGAAGGCCAAGGTGATAGGAACAGTTGTTGGAATTAGTGGTGCAATGTTGATTACCTTTCTCAAAGGGTTTGAA ATTAATATTTTATCTTCCAAAATTGACCTTATGCATCCACATCATGACCAAAGTGGGCATATGATGCGGCCTCATGTAGA TTTTAGTAATAAACTATTAGGGGTTCCATGCGCCTTAGCAAGTTGCTGCTCTTTCTCTTTGTGGTTAATCATTCAGGCTA AGATGAACCAAGAATATCCAAGCTATCACTCAAGCTCAGCTTTGATGTCAACAATGGGAGCAATACAATCTACTATTATT GCTCTTTGTGTTGATAGAGATTGGAGCCAATGGAAGTTAGGTTACAATATCAGGCTGCTAACCGTGGCTTATTCGGGAAT TGTGGCTTCTGGTATGGTGGTTATTGTAATTTCGTGGTGCGTGAAGATGAGAGGTCCTCTATTTGCATCCATCTTTAATC CTCTACAACTTTTGCTTGTGGCAATCGCTGCTTATTTATTATTGGATGAGAAATTATATTTAGGAAGTGTGGTTGGAGCA GTACTGATCGTGTGTGGCTTATATGGTGTGCTATGGGGTAAGAGCAGAGAAATGAAAAAGAAGACTCAACTAGTGCCATT AGATCAAAACACCACGGAGCCCGAAGTCATTGAAGTTACTGTTATGTCCACGCCTGAAAATTGTGACAAATGTGTCCAGA GCTACCAAAGTCAAACTAGTTAG
Protein sequence (LotjaGi4g1v0030700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGVCNLMQGLKPALLMVFTQIAYAAANIVYKLAINDGMSMRVATAYRLIFASAFTVPLALILDRKKRQKITWRVIFMAF LCGLFGGSLFLNLYAVGLALTSATFMLAVLNLVPGVTFIMATSFGLEKLNFGAAEGKAKVIGTVVGISGAMLITFLKGFE INILSSKIDLMHPHHDQSGHMMRPHVDFSNKLLGVPCALASCCSFSLWLIIQAKMNQEYPSYHSSSALMSTMGAIQSTII ALCVDRDWSQWKLGYNIRLLTVAYSGIVASGMVVIVISWCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVVGA VLIVCGLYGVLWGKSREMKKKTQLVPLDQNTTEPEVIEVTVMSTPENCDKCVQSYQSQTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 8 | 354 | 347 | 1.6E-187 | ||
| PANTHER | 8 | 354 | 347 | 1.6E-187 | – | |
| Pfam | 12 | 154 | 143 | 8.6E-12 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 34 | 21 | - | – | |
| Phobius | 35 | 45 | 11 | - | – | |
| TMHMM | 45 | 63 | 19 | - | – | |
| Phobius | 46 | 63 | 18 | - | – | |
| SUPERFAMILY | 47 | 155 | 109 | 5.75E-6 | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| Phobius | 75 | 97 | 23 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 98 | 102 | 5 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 103 | 126 | 24 | - | – | |
| Phobius | 127 | 137 | 11 | - | – | |
| Phobius | 138 | 156 | 19 | - | – | |
| TMHMM | 138 | 156 | 19 | - | – | |
| Phobius | 157 | 191 | 35 | - | – | |
| Phobius | 192 | 210 | 19 | - | – | |
| TMHMM | 192 | 210 | 19 | - | – | |
| Pfam | 193 | 331 | 139 | 9.4E-14 | ||
| Phobius | 211 | 221 | 11 | - | – | |
| Phobius | 222 | 242 | 21 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 243 | 261 | 19 | - | – | |
| SUPERFAMILY | 255 | 336 | 82 | 3.27E-10 | – | |
| TMHMM | 259 | 281 | 23 | - | – | |
| Phobius | 262 | 280 | 19 | - | – | |
| Phobius | 281 | 286 | 6 | - | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| Phobius | 287 | 306 | 20 | - | – | |
| Phobius | 307 | 311 | 5 | - | – | |
| Phobius | 312 | 331 | 20 | - | – | |
| TMHMM | 313 | 332 | 20 | - | – | |
| Phobius | 332 | 380 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0030700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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