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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0032600 |
| Transcript ID | LotjaGi4g1v0032600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT5G64530.1 xylem NAC domain 1; Swiss-Prot: sp|Q8GWK6|NC104_ARATH NAC domain-containing protein 104; TrEMBL-Plants: tr|I1KR61|I1KR61_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3980608..3982623) extracted from Lotus japonicus Gifu genome v1.2.
CAATATAGAGATCCCGTTTCGTGGCAAAGTATCTATCTACCCATCACGTTCCGTTATCCGCCGCCTTGCTTAATTGGTTG CTTGGTGTTGAGTGCTAACACTCACACTCACTAGTGCCCAAAACTTTTATCAAACATTTGATATATATATATATATTCCA CAAAAATAAAATAAAAATGTATCAGCATTGTATTTGTACTACGTGATAAACAAAACATCACCTTCAGTTTCACGTCATTC ATTCCCTTCTTTGCACTACACAATTCTATAAATACCACAAACGTTGACACCCACCACACCACCACCTTCATAATATCCTC CATCACTCTATAATTTCTTCCTTTTATCATCAGCTTCTTCTGATCCTCTAATGGGAGAAAATAACAACAATGTCAACAAC CTTCCACCCGGGTTCCGATTTTACCCTACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCTTCCCTTTTGCC TTATCACCCAGATGTCATCCCTGATCTTGACCTCTACCCATATGATCCCTGGCAACTTCATGGTAATGTCTCAAGAAAGC TAACAAAATTTCATGCCATTTTGAGCTTTTTTTTAATGCGCGACAAAATAGTTATCGTGCATCTTTGAAAACTCTTCCAA AAACTACGGCGAAGCCAGAACCACTGTGGACATAAGCAAAAGTTAAGAAAAGTCGCTTTTGTCCACTATAATTTTGGCTT TACCGTGATGTTTGAAGGAGTTTCAATTATAAAATTGAAGTTGGTGTGCAGTGTAACTAAGTGTCAATTAATTGTGAATG AGCTTGTGTTGTGCATTTTTTTCAGGTAGAGCTTTGGAAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACGCAAAA CAGGATCACAAGCAATGGTTATTGGGTAGCAATGGGAATGGAGGAGCCAGTGGTTGCAAGCTCAAGCAACAAGAGAGTTG GTATGAAGAAATATTATGTTTTCCATGTGGGACAAGCCCCTGATGGTAACAAAACCAATTGGATAATGCAAGAGTATCGC CTACCAGATTCTGCTTCCTCTAGCAGAACATCCAGAAGAAAAACAGTTAGTACTACTACATAGTTTTTTTTTGTTTTTTT TTTTAAATTGCTCTCTCAATTTCAACTGTGAAAGCCGAGAGTCTTTATAACAGTGTGACTCTTAATAATCAAACTCTCAA TCTAGTTAGGAGATTTGAACAATCTTTCTTAATCAACGTGACTAACACTTATTTGGTAGCTAATACCGCACAGATAGTAC ATGAAAATAATACCCCAAAAAATTAAATTTCAAGTGGAAAATTAAAGTATTATTATTGACAGTTGATTTTGTTGGTTGAT TCAGGATCATAGCAAATGGGTGATATGTAGAGTTTATGAGATGGATGATGACCAAGATGGTGATGGAACAGAGCTCTCTT GTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAGTAAGCTTGCCAAATTAGATGGTGTGCAAAGTGATATCT AGTTAGCAGCATTTTCCAAATGGGAATACATATTTAAGCTAAGCTAATTGTTGTTTTTGTTTTCATTATTATTGTTATTT TAGCGGTTGTAGTTAAATGAATCCAATACCACTTTAGCTGCCATTGTATTCAGTGAAGTTGCTATAGCTAGATTTCTATA TAGCATCCCCTCCAAGTGGGGCACTAGGTGAAATTCATGGCCAAACAATATGCAGTGTGACGTTATGCTTTCAAAGATCC CATTCACTACCAAAGGTCACTTGGAAATTCTATGCTCTTTAGTCTTTGTGACAACACGTGGATAATTAAATATATGGTAT CCATTCTAAGCCACTAATATATGATGATCAGCAACCTTGAAAATGAAAATGCAAATTCATATAAGATATATGAAAGAGGC TCATATCTTTTCATTTCAGAGTTTTAATTTGAATGGTTTTTAAATCTTTGTGCGCATTACGACCACAATTGTAGTTGCAC CAACTCGCATATGTTC
CDS sequence (LotjaGi4g1v0032600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAAATAACAACAATGTCAACAACCTTCCACCCGGGTTCCGATTTTACCCTACAGATGAAGAGCTTGTGGTCCA TTTCCTTCACAGAAAGGCTTCCCTTTTGCCTTATCACCCAGATGTCATCCCTGATCTTGACCTCTACCCATATGATCCCT GGCAACTTCATGGTAGAGCTTTGGAAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACGCAAAACAGGATCACAAGC AATGGTTATTGGGTAGCAATGGGAATGGAGGAGCCAGTGGTTGCAAGCTCAAGCAACAAGAGAGTTGGTATGAAGAAATA TTATGTTTTCCATGTGGGACAAGCCCCTGATGGTAACAAAACCAATTGGATAATGCAAGAGTATCGCCTACCAGATTCTG CTTCCTCTAGCAGAACATCCAGAAGAAAAACAGATCATAGCAAATGGGTGATATGTAGAGTTTATGAGATGGATGATGAC CAAGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAGTAAGCTTGCC AAATTAG
Protein sequence (LotjaGi4g1v0032600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGENNNNVNNLPPGFRFYPTDEELVVHFLHRKASLLPYHPDVIPDLDLYPYDPWQLHGRALEEGNQWYYYSRRTQNRITS NGYWVAMGMEEPVVASSSNKRVGMKKYYVFHVGQAPDGNKTNWIMQEYRLPDSASSSRTSRRKTDHSKWVICRVYEMDDD QDGDGTELSCLDEVFLSLDDLEEVSLPN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 155 | 149 | 1.44E-48 | ||
| PANTHER | 8 | 188 | 181 | 1.0E-110 | – | |
| PANTHER | 8 | 188 | 181 | 1.0E-110 | – | |
| ProSiteProfiles | 11 | 157 | 147 | 46.333 | ||
| Pfam | 12 | 130 | 119 | 3.6E-30 | ||
| Gene3D | 20 | 162 | 143 | 2.7E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0032600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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