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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0033400 |
| Transcript ID | LotjaGi4g1v0033400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DNAj, putative; TAIR: AT4G13830.2 DNAJ-like 20; Swiss-Prot: sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic; TrEMBL-Plants: tr|I3T5A5|I3T5A5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0033400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4067204..4072090) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAGAAACATCCAGGCTCTTTCTTAACAAGTCACATATATAAATGTAAATTAACCCATTTCTGCTTTCAACACTCAAA TCGTCTCATAGGTCAAAGAAATCAGTAACAATAATCAATTAATTAAAGCAATGGATGTTCTAACTTTAAGCTCAAGCTCA AGCCTAAGCATTTCCAAGACATTTCATTGCCTTCCACAGTCTAGTAAACAGCAAAGAACTTCTCAGGTTCACTTTGCTAT TTCTTGCAGAGGAGCTACAAAGCTAAAGGAAGAAACCACCTATGGAAACCTCTACAAAGTTTTGTCCTTGAAACCCGGAA GTGCCATGGATGAGATAAAGAGAGCATACAGATCAATGGCTCTTCAGTACCACCCTGATGTGTGCCATGATCCTTCCATG AAAGAGGAGTCAACAAGGATGTTTGTTCAGCTAAATGCAGCTTACAAGACACTGTCAAATCCCCTGCTTAGAGAACAGTA TGACAGTGAAATTAATTTGGGTTTCAGAAGTGAAATGAAAGTTTGTGATGATGATGAGGGGTTGAGAAGTAGGTGGCAAG AGCAAGTGGTTGAGTTGAAGACAAGGTCTCGCAGACGCATGGGACAACAAGGGGGGTCATGGAGCAGCAGAATGAGGACA CAGAACATGAAAAACAGGAACTAGTTTTCTTGTTCTGTACTGTCTGAGTTTGTTGTTGTTCATGTCAAAAAGTAAATTGG TTTAGTTTTAGCAACGATTGTTACATATGTACATTTAACTCTAGTAATTATATCACCCTTTGGGTTTGAGCATGGGTGAT TTCCACATATATAGCATTATCCCAATTGTAACAATTCTTTTAGCACACAAGCATTTAACTTTATACAATTCCCAATATAA CTTTTTATGCTCTTTCCAAGTGTATCTATAGATCCATTGTCATAATATTTAGTAAGTTTGAAATCTCAAGTCCATTACTG ACATTCACATTTATCAAATGATTGTCAGCACAAGCTTAGATGATTAAGTATTTCAAGCTAGCATCAAGGTTAAATTCAAT TAAATATTTGAAAATTCTTCAAATCTGAAAATTCAATCATTTTTATTTCATGATTTACGTATCAGATTCAAGCTAAATTT GTTCAGTTTGTAATGTAGCATGTAACTGCATGAGTGTATGTATAGTAAGGAGAGCATTGAGATTCAAACTCTTGCAATGC AAGTTGTGTCCTCTTTTATTCATCCTTCTAACTCCCCCTCTTGCTTTTGATTCTGTAGCATTGTCAGACGATAAAGCTTT TGGATCTTCGTCTGCTTGTGTTGTCTTTTTGAGTTTGCACTGAACTTCGAGTTTTCTTCTTTCTGTTGCTTGATCTTGTA GAGTGTAGACGTTTCTTCAATTGATATGAATTTTTTTAACGTCAGTTGATATGACTTTGACATTAAGAATTGTGCATGCT TTCTTTCTCAACATATGATCTTTTTCTTCTTGTATCTAATTAAGAGACTTTGAATAGCATAAGAGCATTAGTTTTTATAA CTTCTCCTTTTATCATCATCAAAACTTAAGAACGTTAAGACTAGGGAGTAAAAAATAGACTTGATTGATCTAACAGGTCT GTCTCCTTTCTTGAACTCTACCTGCACAATCTTCTATCAAAAGCTTATAGTTATAGAGAAGGAGAAAGGAAGTTCATGAT CCTAAAATGCAGACATGTGCATGGCATCTCACTGCATGTAAATTTTTCAAGTGATGACAAGTCTCATTGTGTGTTTTCAA GAGATACACAATTTATATTATTATATTGGTGTGCTAAATTCTAGTTCGTGTCTTAGTTCCTGACATCTTAGAGATATATA TGTTTGCTCACTTTTCAAGCACATGCTTGACGAATAGCAACCTTCATTTCAAATATCAATATTATTGCGTAGAAGTGATC TAAGTGAAGTGTACATATAACTTCCTTTTGATTTTTTGCGGAAGTTTCAATGTCACGAGCTATCTTAAAGGGATTCCAAT ATTCCAAGACAGTTCAAAATAATGCATGTTACCTTTGATCCAATAAAATCAAATGCACCCATTGACCTATCGATGAACAA TGCAAAATTCAGAAGGGGAAAAATAACTAACAGTCAAACAAGGCTGCTTATACATTAATTAACATTTCATTGTTTATTCA TAATTCTTTCGACGATGGCTTCCGTGGGTCAGTTAAAAACTGACTCACGGTGCTACACTTGATATTTTAAATTGTAGTGA CAATAATACCCTTACTTTATTTATTCCTTGGACATTAATATCCTCATCTTCTTCACCTGCTCTCTGCACTGTGCTCTCAA TTACAGCCCAGAGGCATGAATTCATAATCTCCATTTCTCTCCTCCAGCAAAAGCCCAGAATCTAAATAATTTTGAACTCT AAAAAACATAATTAAACTATCCAAACCAGAAGGAAGAAAAAACCCTGATTAAATTATCCAAACTGAGGTAAGAAAAAGTA AACTCCCCTTTTTTCTTCTCATAATTAAAATTGTTGGTTCAGATTGCTTTCAAATCTGAACATCGTTGAGGGCATTTGGG AAAGAAAAAAAAAAGGAATCTTTAAGTCATCTTAAGAGGAGTACATAAAAAATTGAAACTTTCCAAAGATTTTGCTGCAA AATTGAAACGAAATCGACCCCCTATTGAAATTGTGGACTCCATTTTCCCTTTTCTTCTTCTTCTTCTTCACTCTCACATC CCTCACTGTATTCCAATTCGTGCTATGCAAAACCCGAATTTTCCCTTCTTCGTTATTGGGAGCGAAGAAATTTAGCTAGT TAGGGTTGGGGGAAAAGGGGAATGGTGGTGTAGTGTTGAATTGAGTATTGGAATGGGTGATGGAAGGTGGTGGGAGGAGG TTTACGGTGAGCCCTCGACCTTGCTGTGGCCGAAGGGTTGTTGGGAAGAAGAGGCTGCAGCGTGGTGGGGTGGTTGATGG GTTCGTCACAAACCCAGGGAGATGGAGCCAGATCTGGCAGCGAACATGGTGACCGAGGTAGGAGAAGGAGGCCTCAGATC AAAACAATGGGGTAGATGAGTAATATGTAAAGAGGATATTTTTGTAAATTAACATTTTGATTCCAATCAATCCCAACCGT TCAATTTTAAAATAATTATATCCAGTGGCTATTTTTAAACTGCACCACCGTGGAACAGTTTTTAGCCGTACCACCGAATC CAACACCATAATTCATTCATGAATCATATGTTAGGTATACATATGCAGTCGTTCTTTTATGTATGATGGTTTGACTGGCC CCAAGAGCTCATTAGTCATTTCTTTTATTATACTAAATAGATCAATGATTGATGAATTATTTTAATGCATCTTACGCAAG ATAGAAAAACATTAAAAAAATAGATAACCAATAAAATTAAATACTTGTTCAAAACTTCATTTCTTAAGTAATTAGTGGTT GGAGTTCGATTCCAAACCATTGTAAATGAAAAAAAACTCATTAGTTAGACCTCTACTTCTTTGTGCACTGAACATGAAAT GAATGATTAGTCTTACGATCACCGGATATAGCATACTCCCGTCAAAAAAATAGATAGATGGTAACAAACAATTCTATCTT CCTTATCTTTAAGTATCACACCATGAGGAGAGTGCATAAAGTTTGAATAAATCAACATATCTAAAACTTTCAGTCTACAC ACAACAATGTCGGGTGTTCTGTCTAATATAATTTAAAGGCTAAAAAGCATTTTTGGCCCCTGATGTTTCAAGTTTGTGCA AATTCTGCCCCTATCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTCCGTCAGGG GTAGACGGTGCACTGTTTGAAAACGGAGGGGTAGACGGTGCACTGTTTGAAAACATGAGGGGTAGACGATGCACTGTTTG AAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAGGGGCAGAATTTGCACAAACTTGAAACATCAGGGGCCAAAAG TGTTTTTTAGCCTTTAAATTTTAATAACATAAATGTAAGTGAAACATCCAGGTTCCTTCCTTCTTAACAAGTCAAATATA TAAATGTAAGTGAACCCAATCTCAAGTTTCAACACACATTTTCACAAATCAAAGATTGCTACAATCAATCAATTAAAGCA ATGTATGTGCTATCCTTAAGCTCAAGCCTAAGCATTGCCAAGCCACTTCATTCCTTTCCACACTCTAGTAAACAGCAAAG AACTACTCAGGTGAACTTTGCTATTTCATGCAGAGGAGCTACAAAGCTAAAGGAAGAAACCACCCATGGAAACCTCTACA AAGTTTTGTCCTTGAAACCCGGAAGTGCCATGGATGAGATAAAGAGAGCATACAGATCAATGGCTCTTCAGTACCACCCT GATGTGTGCCATGATCCTTCCATGAAAGAGGAGTCAACTAAGATGTTTGTTCAGCTAAATGAAGCTTACAAGGCACTGTC AAATCCCCTGCTTAGAGCAGAGTATGACAGTGAAATTGAATTGGATTTCAGAAGTGAAACCAATATTATTAGGGATGAGG GATTGAGAAATATGTGGCAGGAGCTTGTGGTTGATGATTTGAATTTGAAGACAAGGTCTCGCAGACGCATGGGACAGAAA GGGGGATCAGGGAGCAGCAGAATGAAGACAAGAACATGAAAAACAAGAACTAATTTTTTTGCTCTGTCTGAGTTTGTTGC TATTAATGTCACCATAATGTTCAATTGATTCTTTCATGTACAATTCTTTTAGCAAATTAATGTAAAAATTCTTTTAGCAA ACAACCATTTAATCTTATACAATTCCCAATAGTTCAGTAGGAATTTAACTTTTTATGCTATTTGCAAGTGTTTTACACTT ACATCTA
CDS sequence (LotjaGi4g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTCTAACTTTAAGCTCAAGCTCAAGCCTAAGCATTTCCAAGACATTTCATTGCCTTCCACAGTCTAGTAAACA GCAAAGAACTTCTCAGGTTCACTTTGCTATTTCTTGCAGAGGAGCTACAAAGCTAAAGGAAGAAACCACCTATGGAAACC TCTACAAAGTTTTGTCCTTGAAACCCGGAAGTGCCATGGATGAGATAAAGAGAGCATACAGATCAATGGCTCTTCAGTAC CACCCTGATGTGTGCCATGATCCTTCCATGAAAGAGGAGTCAACAAGGATGTTTGTTCAGCTAAATGCAGCTTACAAGAC ACTGTCAAATCCCCTGCTTAGAGAACAGTATGACAGTGAAATTAATTTGGGTTTCAGAAGTGAAATGAAAGTTTGTGATG ATGATGAGGGGTTGAGAAGTAGGTGGCAAGAGCAAGTGGTTGAGTTGAAGACAAGGTCTCGCAGACGCATGGGACAGAAA GGGGGATCAGGGAGCAGCAGAATGAAGACAAGAACATGA
Protein sequence (LotjaGi4g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVLTLSSSSSLSISKTFHCLPQSSKQQRTSQVHFAISCRGATKLKEETTYGNLYKVLSLKPGSAMDEIKRAYRSMALQY HPDVCHDPSMKEESTRMFVQLNAAYKTLSNPLLREQYDSEINLGFRSEMKVCDDDEGLRSRWQEQVVELKTRSRRRMGQK GGSGSSRMKTRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 1.2E-67 | – | |
| PANTHER | 1 | 170 | 170 | 1.2E-67 | – | |
| SUPERFAMILY | 32 | 117 | 86 | 2.88E-23 | ||
| Gene3D | 42 | 145 | 104 | 7.4E-23 | ||
| SMART | 52 | 113 | 62 | 2.8E-19 | ||
| ProSiteProfiles | 53 | 121 | 69 | 16.447 | ||
| Pfam | 53 | 118 | 66 | 3.2E-19 | ||
| CDD | 53 | 110 | 58 | 4.9109E-19 | ||
| PRINTS | 55 | 73 | 19 | 2.5E-10 | ||
| PRINTS | 73 | 88 | 16 | 2.5E-10 | ||
| PRINTS | 93 | 113 | 21 | 2.5E-10 | ||
| MobiDBLite | 150 | 172 | 23 | - | – | |
| MobiDBLite | 158 | 172 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0033400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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