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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0037900 |
| Transcript ID | LotjaGi4g1v0037900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LMBR1 domain-containing 2; TAIR: AT5G65290.1 LMBR1-like membrane protein; Swiss-Prot: sp|Q54Q92|LMD2A_DICDI LMBR1 domain-containing protein 2 homolog A; TrEMBL-Plants: tr|A0A151T265|A0A151T265_CAJCA LMBR1 domain-containing protein 2 isogeny A; Found in the gene: LotjaGi4g1v0037900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4549625..4557580) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGGTGTTTTATATGTTCTCATTACCTCTCACTATTGGCATGGTGATTTTTACTTTGAGATATTTCTCTGGACCTGA TGTGCCTGCATATGTGTTCTTCACGGTGGCATACACATGGTTCTGCTCCCTCTCCATCATCATCCTCGTCCCTGCTGACA TATGGACGGTATTTCCATCTTTTGGATTTCTCTGTTGGTTCATCTATGAGCACAATATATATTGACATAGAAAAGTATTC GTAGACATCTGCATATTGCAAACACCCAACAAATACTTAGAGTTATAAAGGAAGAAAAGACAAAGAAGTAATAGATGTGA GATGAAGAGATAAACAGAGAGAAAAATAAGGTGTTTTTGCTTGTCTGCACTGTTTGGGTGGCTAAGTATCATTATTGGTT GACATGATGACCTAAAGCTCAAGATACTATTAAACTATCTTCAGTACAAGCTGTAAGAAGTTTAGACATTCATGGCATAA TGAGTTTCTAGTGGAGTATGTTACTCAAAAAGTTTGTGCTCTTAAGAGGAATCAATCATTGAACAAATAGAGTGAAGTTA GAGAGTTTATTTCTTTTATTAACAGCTATTTTATTGTTTTTGATATTAAGATATTTCCCTTCATTGACTAGACACTAAAT TGGGATGTAAGCGGAGCGATATCCGTCTTATGGAGTTTGTCATATTGGAGTACCTTCTTACTTACATGGTATGCTGTTTC CCTTTTATAAAGCTTTGAATAATGTTATCATCAAATGATGCCTTGTACCCCTGTTGATCAATGCCTTTGAATTTAAATGA CTCTTTGATATAATGTTTGGTATACCGTATATGTCTTCTACACATATTCAAATTGTTTTTCAGCTAGCCCCAGCTATCCC TTGTTTTATACCATGTTAAATATATATTTACACACGTGCACTTGCACTGAGAGGAAAAAGAAGCAGCAGCTAGAAGACTA TTGCATATAGAATAAAGGGCAAACCGGTGCTATAAAGCTCCCGTTGTGCGCGAGGTTCCGGACCCACTTTGTGGATCTAA TGTAGAAAGCCTTACCTTTCATTTTAGCAAAGAGTGATTTCATGGCTCGAACCTCCGTGTGACCGTAAAGTCACATGGCA ACAATAGAATATAGCAAGGCTCGCCCTCACTATTGCATATAGAATATCTCCACTATTTTTGTTATTGACTGTACTTCAAT TTTTTCAGAAGTTATCCTAACTGATATGAAGTTGCGTACTTCATTGATATGATATTTTACTCATTTTCCCTTTACTTATG CTATAGCTCTGGTGGGAGTCAATTAGGAAATTTATGACAGCTAGGTTAATAGAAATGCACACTCATATTTTTGTATTAAA TTATTTCTCTAAACAGGGTTGTGGTTCCCACTATTCAGGGTTATGAAGATGCTGGAGACTTCACAGTCAAAGCCAGATTG AAGACCAGCTTGCATGGAAACCTTGTTTTCTATCTATCTGTTGGGTCTGTAGGACTTTTCGGATTGATATTACTAATTTC TCTACACAAGGATTGGTTTGCTTCTTTCTTTTACCTTTGTTAATATTTTTCATTTATTTACTTGAATCACTAAATGCAAT CCCTTATTGTATTATCTTCTGACTGGTTTTACAATAAATTTTACTGCCAAGTTCCACACACTGCCAGATTACCCTATCTA ATTATATTCTTAATAATTTGCAGGAGTGGTAATATAATGGGGTTTGCCATGGCTTGTTCTAACACATTTGGACTGGTTAC CGGTGCATTTCTACTTGGATTTGGTTTGAGTGAAATTCCAAAGGGCATTTGGTTCAATGCAGATTGGACTACTCAGCAAA AAATTCTTTCCCACAAAGTTGCAAAAATGGCAGTCAAATTGGATGATGCTCATCAAGATTTTTCAAATGCTATTGTTGTA AGTTAGTCATACCATTGGCCAGTATTGATCTTCTAACATTTAAATTTGCATTGTGTATAAAATCTTCCCATTCTTTGAAA TATTAGTGTATCTTCTCCTGGAAGTAGGGTGCAATCCTGAAGCATGGTTAAGTTATGAAATTTCTAGAATTTCTGTCAGT TCGAATGAACTTAAAAATAAAAGATGGCATGTAAATATCTCTATTTGTTACATTGTGGAATTTAAAAAGGAAATGGGAAT AATTGAATACAAAAATGTTGCAAAACCTACATGGATCTAAGTCTTGAGTCCTGCAATATCAATCACATTTCTTGCTATGG ATCCATATTCAGACAATTTCCACTTTCTTCCTTTTGGTGTGTGTATAACAGTAGTAATCATATAATATCACATATACTCT CTTTTTATCATTTATTTTTTACAGATATGATTTTTGATGGTGTGGTATTCTCAGATCACACAGGCAACATCAAAGCAAAT GTCGAAGCGAGATTCTTTGAGACCCTACATGAATATAATTGACAAAATGTTGGTTGAGATGGTAATCTCTAATAGTACAT ACATGCAGGTGCTTAGATTCAAAATGTTTTGTTTACTAAGTGCTCAAATGACATTGGTTTTTCCAGTTGAAGGAAGACCC CTCCTTCAAACCGCAGGGTGGGAGACTAGGAGAAAGTGACATGGACTATGATACAGATGAGAAATCAATGGCAGCGTTAA GGCGTCATCTTAGAAGAGCTCGTGAGCAGTATTATCGATATAGAAGGTATACTCTGAAGTCTGATCTGACTTGGTACAGA AGTTGGTACATGGTTCTAAGTTCTTCTCATGTAGATCTATCAAAATAAGGATTCATTTGATGACCAGCTTCTGCCTGGTG GGCTTATATGCACAGTTCTTGTATGAGTAATAGTTTCTTCTTTAAGAAACTTCATTTCTCTGCTCTGTCTTTTTTGTTGA ACTAGCTCAAAACTGCATTACATTTTGATACTTAAGTCTTAAATGCAATATGGTTAGGAAAATATTTGGCAATGAGTAGC TGTGTGATTAGGTCCACATCACAAAAGCTAGAACCCACACTAGAATCCCATACATCCAATGGAACCCAGGTTCCATATCT TGCCATTGGATCCTAACATCCCACCACGCTTCGGCACCCACGCAGGCTGGCTATGCACTAACTCCTTGACAAGTCCCGAG CAAACACTGCAATGTTGGCATCAATCCTCGCGCCGCTCATTTTCAGCTGAGAGACATGGTGAAAGGTTTTGATACCATAT AAGAACTGTGTAAGAACCTTGGGAGAACCATATCATACAAGCTAGCCATTGTAGTTGGAGAGCCCAATGCCTTATAAAAT CTACACTAGAATCTCATACTTCAAATTTGGGACCCAAGTCCCAAATATTGCAATTGGATCCCAACAGTGTGTTTGGTTCA AAACTTTCAAATGACAAAAAGTGAGCATATATCTTTTTATGGATTGGGCAAAAGTCTCTTCACATTGCACTCAACAGCTG TCCAAACACAAAATCTTTTTATACATATAAGTGCCTATGATGCATTAGAACATTGTTGGGAAACTATTAATCTTATGCAG CGAGTTGATTTTAAACCTCATTTTCTTTTTCCAGATCCTTTCTTTATTTCTTTTTCTACACATATTTCTTACAGAAAATT TTTTGATAGCTTCATTACTGACATGCCAGTATGCCACTGTGTCACAACATACCATTAGACTTCACCATGTTACACTTGGT TTTAGTATATATAATATAAAAATTATCTTCAAGCACTAAATACATTCTATCATTATTGCATTTGCAGTGAATATACAAAA TTTGTCATAGATGCCCTTGAGCTGGAGGATACCATAAAGAATTATGAGCGTCGGGATTCTACAGGATGGTAAGCTCTTTA ACTTAAACTTGTTTTTCTCGCTTTTGTTTTTTTTTTTCCTCTCTTATTTTTTTAAGAATGGACTACTGCTGTAGATTCTG TGACAGATGATAGTTGTTCACCTCTTATGGGAAAGGGAGGGTTCAATATTCCTAGTTTCTGTTGCATCAATTTGATATGG AATTTAGTCCAAAAACTCATTGGTGAATAGTGGAATTTAAACTTAGTGCGTAATGGAGTATTTAAGTGAGTAGTTGTGAC TCTTTAATAATTGTAACAGTCACTTGTCATACACTCATATACTATAAGTACACGTATATGCGATGCATAAATTAACAGAG GAATACAAGAAAAGTTCAGCCACTAAACACCTCCTCTTACTCTAACTTTCTACTAAATTATACATTACATATAGTCTATC ATATTCTACATTTCCTTGAGTGTGTTAGTTTCTATAATCAGCTCTATAATGCCACCAACAGAAGTAATTTGCAGTAGCTC TATATTATTATTTAAATATTTGCATTCCATTCTTGCAGGAAATATATGTCATGCTTGAGGCCTGAACGAACAGGAAAAGT AGGTGCACTTTTGGATACAATTGGTACTTACTACATTTTAAATTTATTTCTCTTTCTTTTATTTTAGTACTAGTACATGT GTTAGCTTTTCACATATTTTTACTTATTAGTTACTTAATAGAAAAATTAAATCCGGCTGAAATGTTGATTTATGACAGAG TTTCTATGGCGATGTGTATTAAGGAAACAGCTTGAGAAATCATTGGCTGTTATATTGGGTTGCATCTCATGTGCAATTCT ATTAGCAGAGGCTACCATACCCAGTGGGGTTGATTTATCCCTTTTCTCTATCCTAGTACATGCTGGAGGCAAGCATGAGG TGCTAGTGCAGGTAAAATTTGTAGACATTTTCTTTGAGAAATTATCTTTCTCTTTCTTAATTCATTCCTGTTCTGGCTAT ATTTTTTCCTTACATGTCATAATCAAGGTTAATTCACTTCTTATTAAAACCATTAACAATTGATTTCACAGATTTGAGGT TAGTAAGAAGAAAATTTGAAGACGAAAGAAGTGGAATCGATTAATTTACCATGAAATGTTTTTTCCTAAGTGAATTTTTA GAAATCCTTTAACAATTGATTCTAAAGTCAAAGTCAATTCTAGAGAGAAGTTTTTGTATATAAGAATTGATTCTGAGGAA AAAAAGTTGATCCAAACATGCAATGGTGTGAATAAAACCAAAAGTGGCTCAGAGGCTTGCTTCATTTTGTGTTCAAATTA TTGATATTGATTGTAGAAAGAAACTTTTCTGATATATATAAACTTGTTAGTAGTAATAATGTAGTATTAGCCCACAAAAC CAAATTTGAGGTTAGTAAGAAACCAGAAAATTTGAAGTTGAAAGAAGTGGAATCAATTAATTTAACATGAAATGTTTTTG CCTAAGTGAATGTTTAGAAATCCTTTTACAATTGATTCTGTTTGGAGAGAAGTTTCTGTATATTAGAGTTGATTCTAATG AAAAAGAAGTTGATCCAAACATGGTATGATGCGAATAAAACGAAAAGTGGCTCAAAGGCTTGCTTTATTTTGAGTTCAAA GTTATTGATATTGATTGCAGAAGGGAACTATTCTGCTCTATATAAACCTGTTTAGTAGTAATTAGCCTGCAAAACCACAC TTGCAATGCTGATAGTGTAAGTCAAAATCACTATGCCACCTACTAACATTGCAGGATTGGTAAGTCAAGGAAATTAATGC ATTGTCAAAGGGGTAGATGGTAGGTGCAGCCCATTGTTGAAAATGCAAATATGCATACACACACAATGCATTGAAATTGG CTTGGTTTCAGCTTCTATAAATATGAGAGAAAGCTGAAGCAAAATGCATCCCAGCAATTGAATCCCAGCAATTGTGTCCC ATGGTAGAGAGCAAATCCAGCAGGATGTAGTTTCTCAAGCTTTAAGCTTTTATCTGTTGTTTTTTCTTATACTCTTGGTT TAGAGTGTTGTGAGGTTTGATCAGATAATAGCTTTGGAGAGTGTGGGTGTACTGGGGTTGTGGGGTAGTTGAGAGAAATA TCTGTGTGTTGTAATAATTTTCACATAGTGTTTATTCTCTGGTTGTCGGTTTTGACAACGGCCGTGGTTTTTCTCCGGTT TTGGAGTTTCCACGTTAAATCCTTGTGTTGTGATTGTGTCACCGTTTTTATCTCTCTATGCCGATTTCCTAACAACTGGT ATCAGAGCCGATGGTTCGACCATGGTGACGGCTTTGAGGATAGCTTCCGCTCGGAGCCACGATGATACTGTGAAACTGCT GTTTTGAAGGTTCTCTCGGGAACCTGCCTGATGCACGGTTTTCAGTTGGTATGTGGCAGTGCTGTGATAGAGAGATTGTA TTTTGACTTGTTGCAAGTCATGGATGGTCGATGCAATCAGGACTACACAAGGTGGACATGTAATTGTCCAGGTGACACAC AAGCATTGGTTGGCATTAATGCAAGATGTGTGGTGATAGCACATGGGCATTGGCTGACATGGATGCAAGGTGTGTGGTGA TAGCGTGCGGGCATTGGTTGGCGTTGATGCAAGGTACGTGGTTATGTCGATGGCTGATGAACTTCCGGAGAAAGCCAACA TGGAGGTTGCACCATAAATTTTCAGCAAGGTTTCGACATGTGTAAATTCTTGGAATGGTTTAGTTCCAAGTGAAGATAAT TCTTGGAATGGTTTAATTCCAAGTGAAGTGAAATTCTTGGGATGGTTTAATTCCAAGTGAAGTGTACTCATTATGGTGGA GTATGATAGTTTTCTTTGCCGGTATAGGCAATGAGAACTATGATTGTCGGAGTAGACAATGAAACATATGATTGTCGGTA TAGACAATGATTGTCGATGAAGACAATGGAAGCGGAAGATGCATGTTGAGTGGGAGCATAGTGTGATGTGGTGTTGATGA AGGTGTGAAGATCAACTGAAGTCAATCTTCAAGTGGGAGATTGTAAGTCAAAATCACTATGCCACCTACTAACATTGCAG GATTGGTAAGTCAAGGAAATTAATGCATTGTCAAAGGGGTAGATGGTAGGTGCAGCCCATTGTTGAAAATGCAAATATGC ATACACACACAATGCATTGAAATTGGCTTGGTTTCAGCTTCTATAAATATGAGAGAAAGCTGAAGCAAAATGCATCCCAG CAATTGAATCCCAGCAATTGTGTCCCATGGTAGAGAGCAAATCCAGCAGGATGTAGTTTCTCAAGCTTTAAGCTTTTATC TGTTGTTTTTTCTTATACTCTTGGTTTAGAGTGTTGTGAGGTTTGATCAGATAATAGCTTTGGAGAGTGTGGGTGTACTG GGGTTGTGGGGTAGTTGAGAGAAATATCTGTGTGTTGTAATAATTTTCACATAGTGTTTATTCTCTGGTTGTCGGTTTTG ACAACGGCCGTGGTTTTTCTCCGGTTTTGGAGTTTCCACGTTAAATCCTTGTGTTGTGATTGTGTCACCGTTTTTATCTC TCTATGCCGATTTCCTAACAGATAGGTTGCACAACTCTTAGAGAAGAAACATGCCTTAAAAGTTATATTGTTTAGGCAGT TAGTTGCAATTTATTTTGACTCATACATGAAATTATTATTTTTCTCATTCTTCATCTTGTTGTAAACTGATTATTGGATT ATTTTCACAGTTAGCTGCTTTCATCCCCTTGATGTATATGTGTGTCTGCACGTATTTTTCCTTGTTTAAAATGGGAACGA TGATGTTTTACTCACTAACACCAAGACAAACTAGCTCAGTTAGCTTGCTTATGATATGCTCGTAAGTTTTTCACCTTTTT TTCTTATATTACCTAATATTTTTAGTCATTCATGTGATGCATGGTTATTCTAAATCACTTCCCTGTACATCTAACTTCTT TTTGTAGGATGGTTGCAAGATATGCAGCACCAATTTCGTACAATTTTCTCAATCTCATTAATCTTGGTGGAGATAGGAAA ACCATTTTTGAAAAGGTATTTTACTGTTGTCTGGTCCTTAACTTCATATGCTACAAATATGATGTTGTCTTCTAGCATGT TTAGATCAGTTTTTCTTTCTACAGAATCAATACTAA
CDS sequence (LotjaGi4g1v0037900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGTGTTTTATATGTTCTCATTACCTCTCACTATTGGCATGGTGATTTTTACTTTGAGATATTTCTCTGGACCTGA TGTGCCTGCATATGTGTTCTTCACGGTGGCATACACATGGTTCTGCTCCCTCTCCATCATCATCCTCGTCCCTGCTGACA TATGGACGACACTAAATTGGGATGTAAGCGGAGCGATATCCGTCTTATGGAGTTTGTCATATTGGAGTACCTTCTTACTT ACATGGGTTGTGGTTCCCACTATTCAGGGTTATGAAGATGCTGGAGACTTCACAGTCAAAGCCAGATTGAAGACCAGCTT GCATGGAAACCTTGTTTTCTATCTATCTGTTGGGTCTGTAGGACTTTTCGGATTGATATTACTAATTTCTCTACACAAGG ATTGGAGTGGTAATATAATGGGGTTTGCCATGGCTTGTTCTAACACATTTGGACTGGTTACCGGTGCATTTCTACTTGGA TTTGGTTTGAGTGAAATTCCAAAGGGCATTTGGTTCAATGCAGATTGGACTACTCAGCAAAAAATTCTTTCCCACAAAGT TGCAAAAATGGCAGTCAAATTGGATGATGCTCATCAAGATTTTTCAAATGCTATTGTTATCACACAGGCAACATCAAAGC AAATGTCGAAGCGAGATTCTTTGAGACCCTACATGAATATAATTGACAAAATGTTGGTTGAGATGTTGAAGGAAGACCCC TCCTTCAAACCGCAGGGTGGGAGACTAGGAGAAAGTGACATGGACTATGATACAGATGAGAAATCAATGGCAGCGTTAAG GCGTCATCTTAGAAGAGCTCGTGAGCAGTATTATCGATATAGAAGTGAATATACAAAATTTGTCATAGATGCCCTTGAGC TGGAGGATACCATAAAGAATTATGAGCGTCGGGATTCTACAGGATGGAAATATATGTCATGCTTGAGGCCTGAACGAACA GGAAAAGTAGGTGCACTTTTGGATACAATTGAGTTTCTATGGCGATGTGTATTAAGGAAACAGCTTGAGAAATCATTGGC TGTTATATTGGGTTGCATCTCATGTGCAATTCTATTAGCAGAGGCTACCATACCCAGTGGGGTTGATTTATCCCTTTTCT CTATCCTAGTACATGCTGGAGGCAAGCATGAGGTGCTAGTGCAGTTAGCTGCTTTCATCCCCTTGATGTATATGTGTGTC TGCACGTATTTTTCCTTGTTTAAAATGGGAACGATGATGTTTTACTCACTAACACCAAGACAAACTAGCTCAGTTAGCTT GCTTATGATATGCTCGATGGTTGCAAGATATGCAGCACCAATTTCGTACAATTTTCTCAATCTCATTAATCTTGGTGGAG ATAGGAAAACCATTTTTGAAAAGGTATTTTACTGTTGTCTGGTCCTTAACTTCATATGCTACAAATATGATGTTGTCTTC TAG
Protein sequence (LotjaGi4g1v0037900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWVFYMFSLPLTIGMVIFTLRYFSGPDVPAYVFFTVAYTWFCSLSIIILVPADIWTTLNWDVSGAISVLWSLSYWSTFLL TWVVVPTIQGYEDAGDFTVKARLKTSLHGNLVFYLSVGSVGLFGLILLISLHKDWSGNIMGFAMACSNTFGLVTGAFLLG FGLSEIPKGIWFNADWTTQQKILSHKVAKMAVKLDDAHQDFSNAIVITQATSKQMSKRDSLRPYMNIIDKMLVEMLKEDP SFKPQGGRLGESDMDYDTDEKSMAALRRHLRRAREQYYRYRSEYTKFVIDALELEDTIKNYERRDSTGWKYMSCLRPERT GKVGALLDTIEFLWRCVLRKQLEKSLAVILGCISCAILLAEATIPSGVDLSLFSILVHAGGKHEVLVQLAAFIPLMYMCV CTYFSLFKMGTMMFYSLTPRQTSSVSLLMICSMVARYAAPISYNFLNLINLGGDRKTIFEKVFYCCLVLNFICYKYDVVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 1.6E-295 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 461 | 461 | 1.6E-295 | – | |
| Pfam | 4 | 473 | 470 | 3.1E-79 | ||
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| Phobius | 24 | 29 | 6 | - | – | |
| Phobius | 30 | 52 | 23 | - | – | |
| TMHMM | 30 | 49 | 20 | - | – | |
| Phobius | 53 | 71 | 19 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 72 | 91 | 20 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 111 | 130 | 20 | - | – | |
| Phobius | 131 | 141 | 11 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 142 | 163 | 22 | - | – | |
| Phobius | 164 | 344 | 181 | - | – | |
| Coils | 256 | 283 | 28 | - | – | |
| Phobius | 345 | 365 | 21 | - | – | |
| TMHMM | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 384 | 19 | - | – | |
| Phobius | 385 | 406 | 22 | - | – | |
| TMHMM | 385 | 407 | 23 | - | – | |
| Phobius | 407 | 426 | 20 | - | – | |
| Phobius | 427 | 446 | 20 | - | – | |
| Phobius | 447 | 457 | 11 | - | – | |
| Phobius | 458 | 476 | 19 | - | – | |
| Phobius | 477 | 480 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0037900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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