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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0038700 |
| Transcript ID | LotjaGi4g1v0038700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT5G09460.1 transcription factor bHLH143; Swiss-Prot: sp|Q9FY69|BH143_ARATH Transcription factor bHLH143; TrEMBL-Plants: tr|K7L5B8|K7L5B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0038700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4625726..4629831) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGCTATATAGTGCTGGCATCCAAATTCAGCAGTCTCCTCTTTGGACATTTTCTCGTTGTAACTGCTTCCTTCATCAC TCTTCCCTGTTCACTGTCATTCATCTCTCTCTTCTCTGACCCTGCTGAAGGACATTGTTTTCTCCCTCATTCACCTCTGT AAGTATTTCAAACGCTTTGTGAGTTTTCTATATTCTTTGCTCTGGTTAGTGGATAATATTGGGGGGGGGGGGGGGGGGAG CGATCTCCTTGATGGAACTTTATTTTAGAACTAAATCTTATAAGGGTGTGTATATTTACTTTGTTGGGTCATGTGCATGT TAAATTAACAGACTCTTGTTGTTGAGAAATTAAAGGACTATAGCAGTTTGATTTTTTCTCATGTTATATGTGTTGTAGAA TAAAATTTTAAGAAACTCATTTAATTGAAAGATTTTTTGACAAGGGTAAGTTTGCTTCAAGTCCTTATATGTTAGATGAG AACAGTAAGCAGTGTGATTACATTCATTTTCTTTTTCTATTTTATGATGTCCCTTGTAGTTGCAATGAATCTTTCTTCCA TTTGGACAAGAAATATAAGAGAAAGATGGGGTTACTACAGGGTTATTTTGTATAGAGGAATCATTAAGTTAAAAGTTCCA GTGTGCCTGTCCACTGTCACAGTGCTTTTTGATACTTTCTCATTTGAGGCCTCTCTTTTTTTTTTTTCTGTAAATTGACG ATTTGATTTATAATTTTTTTTTCTGATGTATGGTAAAATGAAATTTTGATGTTTATTATATGATATATTATATGATATAA ATCTTGTTTCAGGGATATTGGTGATTTTGAGTGCATAACATCTGCCTCCAGCTCTAAGCAATTCTTGGTATCCAAAGACT CCCAGGGCAAAACCAACATGCGTTGGTTGGGTCTTTCTGTTGATGTGTTCCGCCGAGTTGTGAGGTTGAACCTGCATTGT AAAGTTATTCTGTAGCTCACAGTTCCCATAAATCCTATCGTTTGTTACCTTCGGTTCGTTGTTCTCAGGTACTGACATGG AAGCCAACCGTTGTGTGTTTATTTCTTCTGATAAGTATAGAATTGGCTAAAAGATAGGAAGCGAAAGCTGATTCTGTTTG TGTTTTTAGTTTGTCCTAATCTCATATTGTTCTCTAGTTCTACTGTTTTTGTATTTTGATTGGTATCTTAATTGTCATAT TCTATTGAGAATTTACTGTGTACGTTTAGACTGATTGAGTAGTGTGGTGAGGATCAAAAGAAGTTATGGTAAGCCAAGCA GCAAGCCAAACGAAATTCCGAGCATTGAAACATGAGAATGGCATTGAAGGTGAACCAACAATTATTGTTAAAGTGATAGC ATGCTTTCAACCCTTGCACTCTTGTCAGGTTAGTAACATGTTATTGATTGTCTGTATTTTCCAATTGCATTTCTTTTCTA TAACTAGATCCATGATTATGAAACTAGTTGATTGATGGAAATTTTCCTTCAGTGTCTGTATTATGCATAAAACATACACA AGACCATTAAACACTATAGCTAATGTTATTAGTTATTGTAAAGTTTTACGAGCTCAACGATTGAATGGATGCTATCTTCT GATTCTTCGCAGGCTGAGTACTTCCGTCAATTGCTTAAGCCTGTCACGTAGATTGATTCACAGTTCTTTCATACTAAGTT GGAGTTTTTAGTTTTCCTTTTCATTCCTCTTTTCCTGAGAGAAGCAGTAAGTTACCAAAGATCTCATAAGAGCACCATAG CATCTACTGGTACATATTTTTAAATGCACTTTTTCAAAAATTGTTCCTCTTTTCCTGAAGTGCATGTTTGTAAATTAGTT TGAAAACCACAGTGTAGCCAAAGTCATGGTTGACAGAAGCTAAAGCTAGGGAAGTTGCTTCTCTGTTTACCATGATTTTG ACTTCACTGTGGTTTTTTAACGTGTTTCCAATCATGCACGAAAGGGTCTCATATTAACTATGTGGTTCCACTGTTCTGTA GGTCAGTTTTATTGAATGGTTAAGGCTGGCAGGTCTTTGCCTCGTCCACATCATGTGGCTTGGCAATCACCTTATTCGAA TTTCTCAAGTGTGCTGCCGAACCCTACCTTACTTGGTGTTCCAGCATATCTAAATTCTAGCACTTGCAATTTTCCCACGG TCGGTACACTTCCCAGACTTGCAGCTCCTGCTATCCCAAGTCTGAAGTCTGAGCTTACAAATGAAGCGAAAGGGTTCCTT CACTACCCCAGTGTCGAAACAGGTTTCAAAGAAACACATACTGTAGGAGCATTTCAAAATGTAAATCCTACATCCTTGCA GCAGAAGTTACTGATCTTTGACCATTCTGGTAATAAGACAAGGATGTTTTATGGTCCAGTTCTCCCTCCTGTCCAGAGTC CAATTGTTACCGCTACTAAATTTGCTCAAAGTCGTAATGTAAATGGGGAGAGACAGGCAAGTAATATGGGCCAAAAATAT GTCGCTGGTTACAGTTTACCAGAAGAGTCTGTTAAGGATCATATAGTTATTGAAGAAAGTGAATATCATGAAGACACAGA AGAAATCAATGCATTGCTTTATTCTGATGATGACTTCGATGGAGATGATGATGATGAGGTAACAAGTACAGACCGTTCCC CTCTGGCAACCAAAAGGACTTATGTGATGCAAGAACAATATGGAGATGCAAAAGATAAGGTTGCTAGTTCTGAATCTTCT GATTGTCCTAACAAAAGACTGAAATTGATTGATGATGGCTACAACGGATCGTCCGCACTTGTGGACAATGCTAGTTTGGT AAGACTAAATGAAACCTCTGAGTGTGTTAGTGATGCTGAATCAAAGAATTCTAGTGGCTGGGGACATTCTGTTGAGAAAA CTAAGGTAGATAGTTCAATGGTGGATGGTATCAAGTCGAAAAAGTTAAAGATCCGTGAATCATTGCGAGCTCTTGAGAAT TTAATTCCTGGTGAAAAAGGAAAAGAACCACTTTCAGTCATTGATGGAGCTATTGAGTACTTGAAATTTTTGATGTCCCA AACTAGTAGTAATCTTGGAGTGAAATATGACTAAGTACTCATTGTCATTGAAGGACACATGCAAGGTGAAAAGATGTACA GTTCTTTGTATTCTTAGCTATGCTAGTTGATTTGCTTATCGTAGTAAGTTTGTTTCTCTCAAAAATATCCTCTTTCTTGA GGTGTATATATGGTTGGGAAATAAAGGTAATAGTGTTACACTATCCCTGGGAAACACAAGTGTGTTTGCAGCGAAAAGAG ACCCTACCCGGCTCGAACTGGATTGCCTCGGCTACCTGAGGTTTAAAGAAAAAGATACTACTACACTATGCCACTGTAGT TGGAGAAAAATGCAGGATGGGGTTTCAACTTGTTGACCAAAATGATTACCCTGTAGCTTTTTTGGATGGAGATGCTAGTG GTGGGGTATTATGTAAATGAGGACACTTTTCCCTCAAGTGTTGCACTCTCTTGGTGATTGAATTGAATGCATGCGCATTA GGCAACTGAGGTCCCACTTTCCACCCTCCTTTTCATTCTTGAGTTAATGCTTTTGTCCTCTCTTTCAAGATATGAGCTCT AAAGTGCCAAGAAAGTTTCCTGATTTCTGGCAGAAAGCCTGAAAGGGGGAGTATAGTGTTTCATCATAAGTTGCTGGGGC CCTTTGAATGGATATAGAAAAGATTACTTTGTTTTACATGTTGATGAGGGAGGAATGAATGATGATGTGCAATTCTAGTT TCTACTTTGTAATTCATAGGTGGTTTGTGTATTGTGGGTCTCTTTTTCATGATGCTATCATGCATCTGTCGGCTGTGTGA TTGTATGAAACTATGAACAATTGAAGTGTGAATGCTCTGCACATGTTTTGGTTTAACCTGCACATCTTTTCAGTTATTAT CTGATGTGCTTCATGTTTGTGCATCTTGAATAATTGAATATCATCTTTGATCAATCTGTGATTCCTCATGTCCTGTTACT TGTACCTTTTTTGCATGCCTTCTACATAAAAATATTAAGAAAAACGTAGGTAGGGGATTAGTGCAGGTATCAAATCCTGA AGCGTAGAATGTAATTTATCTTTCCG
CDS sequence (LotjaGi4g1v0038700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAGGCTGGCAGGTCTTTGCCTCGTCCACATCATGTGGCTTGGCAATCACCTTATTCGAATTTCTCAAGTGTGCT GCCGAACCCTACCTTACTTGGTGTTCCAGCATATCTAAATTCTAGCACTTGCAATTTTCCCACGGTCGGTACACTTCCCA GACTTGCAGCTCCTGCTATCCCAAGTCTGAAGTCTGAGCTTACAAATGAAGCGAAAGGGTTCCTTCACTACCCCAGTGTC GAAACAGGTTTCAAAGAAACACATACTGTAGGAGCATTTCAAAATGTAAATCCTACATCCTTGCAGCAGAAGTTACTGAT CTTTGACCATTCTGGTAATAAGACAAGGATGTTTTATGGTCCAGTTCTCCCTCCTGTCCAGAGTCCAATTGTTACCGCTA CTAAATTTGCTCAAAGTCGTAATGTAAATGGGGAGAGACAGGCAAGTAATATGGGCCAAAAATATGTCGCTGGTTACAGT TTACCAGAAGAGTCTGTTAAGGATCATATAGTTATTGAAGAAAGTGAATATCATGAAGACACAGAAGAAATCAATGCATT GCTTTATTCTGATGATGACTTCGATGGAGATGATGATGATGAGGTAACAAGTACAGACCGTTCCCCTCTGGCAACCAAAA GGACTTATGTGATGCAAGAACAATATGGAGATGCAAAAGATAAGGTTGCTAGTTCTGAATCTTCTGATTGTCCTAACAAA AGACTGAAATTGATTGATGATGGCTACAACGGATCGTCCGCACTTGTGGACAATGCTAGTTTGGTAAGACTAAATGAAAC CTCTGAGTGTGTTAGTGATGCTGAATCAAAGAATTCTAGTGGCTGGGGACATTCTGTTGAGAAAACTAAGGTAGATAGTT CAATGGTGGATGGTATCAAGTCGAAAAAGTTAAAGATCCGTGAATCATTGCGAGCTCTTGAGAATTTAATTCCTGGTGAA AAAGGAAAAGAACCACTTTCAGTCATTGATGGAGCTATTGAGTACTTGAAATTTTTGATGTCCCAAACTAGTAGTAATCT TGGAGTGAAATATGACTAA
Protein sequence (LotjaGi4g1v0038700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKAGRSLPRPHHVAWQSPYSNFSSVLPNPTLLGVPAYLNSSTCNFPTVGTLPRLAAPAIPSLKSELTNEAKGFLHYPSV ETGFKETHTVGAFQNVNPTSLQQKLLIFDHSGNKTRMFYGPVLPPVQSPIVTATKFAQSRNVNGERQASNMGQKYVAGYS LPEESVKDHIVIEESEYHEDTEEINALLYSDDDFDGDDDDEVTSTDRSPLATKRTYVMQEQYGDAKDKVASSESSDCPNK RLKLIDDGYNGSSALVDNASLVRLNETSECVSDAESKNSSGWGHSVEKTKVDSSMVDGIKSKKLKIRESLRALENLIPGE KGKEPLSVIDGAIEYLKFLMSQTSSNLGVKYD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 350 | 350 | 2.6E-112 | – | |
| PANTHER | 1 | 350 | 350 | 2.6E-112 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0038700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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