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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0038900 |
| Transcript ID | LotjaGi4g1v0038900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT5G64360.2 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9RUG2|DNAJ_DEIRA Chaperone protein DnaJ; TrEMBL-Plants: tr|A0A0L9TKW1|A0A0L9TKW1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0038900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4669307..4671746) extracted from Lotus japonicus Gifu genome v1.2.
GCCGAAGCGAAAATAGATCAAGGAAAAAAGCAAATGAAAAGTGAACCATTCAAATAGCTCACCGTAGAGTGATTTCGACC GTGTGTGTGGGACCCACCCCGTTGCCATGCCTCAATACAAAGGTGAAAGAACATGCATCACAATCTCATGGAAGCCTTAA TCACCACCATTGGATTCTATCTCAGCTTCATTATTCATCCTTCCCTCTCAAACCCATAACTTGTATTTTTTTAACAACAC CTTCTCAGTCCCGAGGAACCGTTTTCTTCATAATGACCAGACTACCCTCGCGCCACAACCCATTGCAAACGTGAAACACC CACCCATATCCTTTATCGTCAATTCATCCCACCACCACCACCACCACCATGGAGGGCGGAAACCGACCTGAAGCAGAACG GTGGCTCTACACCGCCAACAAGCTCCTCAGCGCACGTGACCTGCACGGGGCACGCTCCTTCGCGATCCGCGCCCGTGAAT CCGACCCGACGTTTGACGCCTCAGAGCTTCTTCTCACCGTCATCGACACTCTCCTCGCCGGCGAGTCACGGATCAACGAC CACCACCGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACCAACATCGACCACATCGCCGCCCAGTACCGCCG TCTCGCACTCCTCCTCGACCCTCATCGGAACCCCTTCGCCTTCGCCGGTCACGCGTTCTCCTTCGTCCATGACGCTTGGT CCGTTCTCTCCAATCCTGCTAAGAAGGCCATGTACGACAGCGAGCTCCGATTGCTCACTTCCCCACCCCCGCCGCAGCTG CAGCCGCATCCACAACCAGCACCACCGCCTCCGCCGCCGCAGCAGCAGCAGATTAACTCAACGCCGCGGAGAAATCCTAG ATCCGGTGACAACGCTGCTGACCCGGCTCGGCAGAGCCGAAACCCTAACGAGCCAGCTGAGTCAACTAGGCAGACGCGGA CGGCGAGCGTTGAGGCGGAGAAGGAGGATAGCACGAGCTTCTGGACCTCGTGCCCCTACTGTTACGTTCTGTATGAGTAT CCGAAGGGGTATGAGGAGTGTACCCTGCGGTGTCAGGGTTGCCGGAGGGGGTTTCATGCGGTGGTGATACGGTCACCGCC GTTGAACGGGAAAGATGCTTCGTTTTGCAGTTGGGGTTTTTTCCCTCTTGGGTTTTCCGGCAATTGCAAAGATGTGAATG GGGTTTCTAACAACTGGAACCCGTTTTCCCCTCTATTTCCCTGTGCCTTGAAAGGGTCCTCAAGGAAGAGGAACTGGGCT TACTATGATGATGAGCAGGCAGCAGCGTTTATCGATCATTCCGATCCTAGTGATGATGATTCTGATGATGGGGACTGGAG GGGTGGTGGACAGAGGGGGAGGAGGAGGTCAAGGGGAACCAGGAGGTATAATGGTAGTTTTAGGAGGGAACCTGTAGATA GACCTAGGAGGAGTGGTGCTGGTCCTGCAGGGAATCAAAATGCAGCCACTGGTGGGGCTGTTGATGCTGCTGGTGTAGGT CCAGGTGCAGGTGCAAGGGGGGAGTCTAGTAAGAAAGCTGCATTGGGTAGTTCCAGGAGGAGGGGTGCAGGGAACTTGGG GAAGTTAGATTTGAATGTGGAGTTCAGCAATGATCCAGAAGAGCCTTCCCGTGGAGTGCGTGACCGGGAAGGGAATGCAA CTGGCAATGCTGAGGATAATATTGAAGGGATCGGGTTTTTTGAGGGTCTAGATGAGTTCCTTAATAGCTTACCTATTCTG AATGTTGTAGCAGATGATAAGGTTAAGAGTCATTAGCCTTGTAGATGCCTGTGTCTTTTGTTATTTTGTTGTTGTAGACC ATAGATGTTGTACTTGTTACTTGTATGTTTGTAGTTGTCGCGCAATGATGCTGAGCTAATGTGAATTCTTGTCATTGTTA AATGTTATAATAATTTGTAGCACTTTCTCCTTGCTTTAGCTTTGAACTATTTGAGGACGATTCATGATTCATCCCATGTA GATTATCATTGTGCTTTTGAGGAAGGGTGTATTACTAATTGGTGTTTTAATCAAGTGATTCAAGTCACACACACTCTCAC GAAGTATTGTAAGGCCGGACATGCTTTGGATATGCATGGCAACCCTGATGTTTTATCTGTTGGTGCTCTAATCATGCTTG TTACTAATGCATCCATGTGTTTATTTTGATATTTTGTTTGTTTTGGTTTTTGCTTGTTGGCTTGCCCTTGTGTTCTTTAA GGAGAATATTTTCAGATAAGTATGTTTTCACTTGTCTGCTGCTTCTCTAAGCTTTACGCGTTCAAATGTTACGAGAATGG ATAGGTTGAGAGAATTTCTTAAGCATATATCCTTGAGTGTAAGTTAGGTCACTCTCTTTATCATGTGGTATTGCATTGGT CTAGTCTTCCGTTCCTTTCATCACATATTCACATGCTTAG
CDS sequence (LotjaGi4g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGCGGAAACCGACCTGAAGCAGAACGGTGGCTCTACACCGCCAACAAGCTCCTCAGCGCACGTGACCTGCACGG GGCACGCTCCTTCGCGATCCGCGCCCGTGAATCCGACCCGACGTTTGACGCCTCAGAGCTTCTTCTCACCGTCATCGACA CTCTCCTCGCCGGCGAGTCACGGATCAACGACCACCACCGCGACTGGTACGGGATCCTCCAAATCCTCCGCTACACCACC AACATCGACCACATCGCCGCCCAGTACCGCCGTCTCGCACTCCTCCTCGACCCTCATCGGAACCCCTTCGCCTTCGCCGG TCACGCGTTCTCCTTCGTCCATGACGCTTGGTCCGTTCTCTCCAATCCTGCTAAGAAGGCCATGTACGACAGCGAGCTCC GATTGCTCACTTCCCCACCCCCGCCGCAGCTGCAGCCGCATCCACAACCAGCACCACCGCCTCCGCCGCCGCAGCAGCAG CAGATTAACTCAACGCCGCGGAGAAATCCTAGATCCGGTGACAACGCTGCTGACCCGGCTCGGCAGAGCCGAAACCCTAA CGAGCCAGCTGAGTCAACTAGGCAGACGCGGACGGCGAGCGTTGAGGCGGAGAAGGAGGATAGCACGAGCTTCTGGACCT CGTGCCCCTACTGTTACGTTCTGTATGAGTATCCGAAGGGGTATGAGGAGTGTACCCTGCGGTGTCAGGGTTGCCGGAGG GGGTTTCATGCGGTGGTGATACGGTCACCGCCGTTGAACGGGAAAGATGCTTCGTTTTGCAGTTGGGGTTTTTTCCCTCT TGGGTTTTCCGGCAATTGCAAAGATGTGAATGGGGTTTCTAACAACTGGAACCCGTTTTCCCCTCTATTTCCCTGTGCCT TGAAAGGGTCCTCAAGGAAGAGGAACTGGGCTTACTATGATGATGAGCAGGCAGCAGCGTTTATCGATCATTCCGATCCT AGTGATGATGATTCTGATGATGGGGACTGGAGGGGTGGTGGACAGAGGGGGAGGAGGAGGTCAAGGGGAACCAGGAGGTA TAATGGTAGTTTTAGGAGGGAACCTGTAGATAGACCTAGGAGGAGTGGTGCTGGTCCTGCAGGGAATCAAAATGCAGCCA CTGGTGGGGCTGTTGATGCTGCTGGTGTAGGTCCAGGTGCAGGTGCAAGGGGGGAGTCTAGTAAGAAAGCTGCATTGGGT AGTTCCAGGAGGAGGGGTGCAGGGAACTTGGGGAAGTTAGATTTGAATGTGGAGTTCAGCAATGATCCAGAAGAGCCTTC CCGTGGAGTGCGTGACCGGGAAGGGAATGCAACTGGCAATGCTGAGGATAATATTGAAGGGATCGGGTTTTTTGAGGGTC TAGATGAGTTCCTTAATAGCTTACCTATTCTGAATGTTGTAGCAGATGATAAGGTTAAGAGTCATTAG
Protein sequence (LotjaGi4g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGGNRPEAERWLYTANKLLSARDLHGARSFAIRARESDPTFDASELLLTVIDTLLAGESRINDHHRDWYGILQILRYTT NIDHIAAQYRRLALLLDPHRNPFAFAGHAFSFVHDAWSVLSNPAKKAMYDSELRLLTSPPPPQLQPHPQPAPPPPPPQQQ QINSTPRRNPRSGDNAADPARQSRNPNEPAESTRQTRTASVEAEKEDSTSFWTSCPYCYVLYEYPKGYEECTLRCQGCRR GFHAVVIRSPPLNGKDASFCSWGFFPLGFSGNCKDVNGVSNNWNPFSPLFPCALKGSSRKRNWAYYDDEQAAAFIDHSDP SDDDSDDGDWRGGGQRGRRRSRGTRRYNGSFRREPVDRPRRSGAGPAGNQNAATGGAVDAAGVGPGAGARGESSKKAALG SSRRRGAGNLGKLDLNVEFSNDPEEPSRGVRDREGNATGNAEDNIEGIGFFEGLDEFLNSLPILNVVADDKVKSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 471 | 471 | 6.0E-168 | – | |
| PANTHER | 1 | 471 | 471 | 6.0E-168 | – | |
| Gene3D | 57 | 138 | 82 | 1.7E-11 | ||
| SUPERFAMILY | 64 | 134 | 71 | 1.26E-12 | ||
| SMART | 67 | 125 | 59 | 2.4E-7 | ||
| Pfam | 68 | 130 | 63 | 1.9E-11 | ||
| ProSiteProfiles | 68 | 133 | 66 | 11.183 | ||
| CDD | 68 | 122 | 55 | 1.30544E-8 | ||
| ProSitePatterns | 110 | 129 | 20 | - | ||
| MobiDBLite | 135 | 205 | 71 | - | – | |
| MobiDBLite | 139 | 161 | 23 | - | – | |
| MobiDBLite | 162 | 197 | 36 | - | – | |
| MobiDBLite | 315 | 444 | 130 | - | – | |
| MobiDBLite | 418 | 439 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0038900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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