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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0040200 |
| Transcript ID | LotjaGi4g1v0040200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT3G21175.1 ZIM-like 1; Swiss-Prot: sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24; TrEMBL-Plants: tr|I1KL59|I1KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4747590..4753678) extracted from Lotus japonicus Gifu genome v1.2.
AATAAGGACTATAAATTTGAAAAATTATTCTTGAACTTACAAGGGTGGGTTTGTTTTCCTTCAAACACAGTCTAGTCTCT CTTTCTCTTTCCCCTTGACTCTTGTGTTGTGTCTAGGAAACAACACTCAATATTTTCTTTCCATCTCTATTCTATTTCCT TCTTCATTCACATTCACATTCACATTCACTCTCTCTAATCTCTATTCATTCATTCATTCATTCACCCATTCTTCTTCTTC TTCTTCTTCTCTAGGGTTCTCATTCTCATTCTCATCTTCTCCCCCATTCTCCAATTCCTCTTGGGTGATGCTTGAGAAAT GGACATGGTGCTGAATCCGTGTCAAAACAGGGAAGGTTCGCTGATGATGGCGGCGGCGGCTCCCATGCAGGTTGATGGGG TCCACTTTGCCAATGGAGCTGATGAAGGGCAACATGCTCCGGCCACCGTTGCTGCTTCTGCATCCAATGCTTCTGCTCCC CACCCTCGCGCCGGTGAACTCACCATTTCATTTGAAGGCGAGGTTTATGTTTTCCCGGCGGTTACGCCAGAAAAGGTTCT CTTTTTCTTATTTTCATTCTGATCAATTCATGCATCCTGTGTAGTTGTTCATCATGAGCTGAATCATGTGTCTGTGTGTG TTTTGAATTGCAAAACCAAATCATTATCATGGGTTGATTTTGTTTTTCCCTTTTGCCACCGATCAATTGGTGATTATCTT GTTATGAATTGAAATATTTGAATTTGATATGCAAACCCCATTTCTTTATTTTTGAGGAAAATAAAAAATGAGGTTTCTTG GATATGGATTTTTCAGTTCATCATTTGGTAACTGGTAATGGGGTTTGACATCCAAACCAAGCAATGGTTTTACCATAGCA GTGTTTATCACTGTATGTGTAAAATAGTCCTGACTTGATATGAATGTAGGTTTCTAACTGCTCTAAGGTTTGGCCTTGCT TCCCTGGACAGCTAGTTATTCCTTCAGTTTTCGTGAATGAAATGATCCTTTAATTGATTCTGATTGCTAGATTACTAAAT GATGGCTTTTTTATGAATCTGAATGCTAGCTATGCACCAACTGTTGGTATAGTGTTGTGAAAGGCCTCAAAGGAACTCTC TTTATTTGAACATATTTTTGCTTAGAAGCCTATTTGAGCACTTTTGTCGCATCCGTTTCGCGCCGCAATTGAGGTGTGAT TGAAATTCACCCTTAACGGCCGCAACGGAACCACTTTTTGGCGGCAAAAGAACCGTTTTCATCCCGTAATGAAACCGTTT TTCCCCGCGATAAAACCGTTTTCCCAGTGGTCAGGACTGCGATTCTGGAGGTCGGAATGATGTTTCGGGTGATCCTGATC TAAAGCGTCGAGATTCTAACTGTTGATATAGTGTTTTGGGTTTGGGTCTTTGGGACTTTGGGGAAGATGAAGAGTGAGGG TTTGGATTTGGGTCTTTGGGGAAGGTGAAGAGAACAGATAGAGAGCACAGGATAATGAGAGGAACATTTGATTTTTTTTA TGCAACAATTCTTAGTCTTTTTAAATACAACAGAGGAACGTTAGACTGATTGTGTGATTTGTGATTCTGTGGTTGTGATT TTGTATTTTAAAATATACTGATATGATTTTTGCTTTGTAAAGAGGTGTGTAGTTAATTAAAATTTGTTAAAATGGAAACA TTTATGCAATGTTAATTGTGAATAATAGTTGGATTTTCAATTTATGTTGTCTTAAATCTGAATAGGAGGGAATGAAACAA CTTTTGGGATAAATTTTTGGTAGGGAATATGATCATTAATATTTAAATTATTTGAATAACTCTTTTGGTAAATCTAATTT TAATTATTAATTAGAATGGCATAAAATTTTGAAATAAATAGAAACCTATACAATATTGTAATAAAAGGTGTAACAATAAT TGTAGTTTTTTCACACATGGAGCGGGCGTAAAATAAATTCACGCCGCAACATGCATCGCAGCCGCCGCAATGTCTGCAAC CACAGCGGCAGCAAAAGCGACCGCAATTTAAAACCGTAATAAATCTACTTTTAGGTTTCTATTAAGTACTCATGTTATTG TGGTGATTTCTATGGAGATATACTTACAAGCAGTCATTTGTATCCTGTCAACTTCTTCCATTGGATTGGATGTGCTGCCT AATCAAAAGTTTACTTCTTTTTTAAAAAATGGTTCCAACTCGCATTTTTTCATAATTTCTTTGGAATGATTGGATATTTT TGGGGTTTGTTGACCCTTTTTTTTCTTTCTGAAATACAGGTGCAGGCTGTACTATTACTCTTGGGCCAGAAGGACATACC CAATAGCACCCCCAACTCTGGCCTTTTACAACAGAAAAACTTTCCGCAAATTAAGGTATTTCTTCAGAATTTTCTTCTCT TTTAGATAATTTTCATTACCTAGTGCTGCTTAACAGACTGTTAGGTGTTCCTAAATTTCTCATATACGCCAGGGAATAAA TGATCCTTCCCAAAGTTCAAACCTCTCGCGAAGATTTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTT TTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCCCAGAGGTAGGGTGGCAATAGTTGCGCACTTTGATGTACT GTGGCACATTTTTTTTTATTGGCACTTTTGTTTTATCTTTTTATATCATGAATTAGTGTAACAAACATTTTTAAATTTGT GAGACTGAACTTTTTAAAAATATGCATATTGTTATTTTTTAAGTTAAATAGTTGCATGAGCTGGTTTTAGATTGAGAGTA TAGTTTATTTGCATTTGTGCTTTATGAGTGCCCCCCTCCCCGAAAAAAAAATACCTTCTTTCTCTTACATGCTAGCATTT ATGTTGTTTAATGTCTGCATTGGTAATTAGTATTTTAGAATTGTGTGTTTAGGGATGCTTGTCATACATGAGTTGCACAG GATTAAAATATCCGGGCTTTCAGAAAAAATTGAACTCTTTACTTTTGGAATTTATAAGTTCTGCCTGTCCTTTGGCTGTA AACTGTATAGGCTGGTGCTTTTGAGATTGAAACTATTTGGTTATCTAATAGGATGCATCGTAAGAATGGACAATTTGCAT CATTGAAGGAAGATTACAAATCTCCGGCTGGAAACTTGGATTCTAGCAATGGTACTCCTCCTTGCCCAGAATCTATGTAA GTTTTCTTTGAAACTTAAGGATGCAATAATTTTTACTCTTAATCGTTTACATGTTTGTGCTAATATGGTTATTGTTCCGT TGCACCTCTGCCACTTTTAAGTGAACGAAGATGCCAGCATTGTGGAACTAGTGAGAAGTCTACTCCAGCTATGCGTCGAG GACCAGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGTAATTAATAGTGTAACTCAGTTG ATGGATCTCTAAGGTCAGCTCATGATAAATACTGGTCATATATTGTATCATAGTTGATGGTTACAATGACAGGAAACTGG AAAGAGATAGCATCTTTGACATTGATGTGTATATTCAATTGTTTATGATTTGAAGTTGGTGTTTCTGTGTTAAATTAATG GATCTTGTTTATGGAACGCTCTGCCAATCTTCCTCAAGGACCTCCTCAACCAGAGGAATGACAATGTTTTTTTTTTCTAT TCAACATATTATGTATTGTGGTTATAAACTCATTTTGCATGTCTGAATTGTCATTGCCATTCAGGATTTGTTTATTACCA AACCAGCAATTTTTTGTTCCCGTCTTTCCTGAAGGGACTAGAGCAATCTTATTTTTTAGTATCCAATTACTGAACTTCAT TTCCATGTTTTATTGTTATGAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAAGACTCCTTATGAACAAAATGAACGG GTATTATTTTTTAAACTTTTTCCTCCATAGTGTCATTGGACATCTTCTTCATCTTCCGCTTTCACACTTCCTTCTATTAC AAGATAACCAAGATAATTTATTTTTGTTCCTGCACTACACTAAGAATAAATGAATAAATAAACTCTAATAAAACATGTCT GCTCCCAGTGTTCATCAATTTGAAATTCTATGGTATGATCTGTGCTCAACCAAAGATGCTTTGAATTCCAAGTCTAATGA TATTCACTTTATTTTCAGGATACTTCAGCTGATATGAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCCGACCAGGC TGAAGAGGTATTTTATTTTTTGGGACTTATCTTTAGCAAATTAGTACTGTTTTGTCGATATGGGAAATACAAGTGTGTTA ATTTTTTATTTTCTTGTGACATTGGGTCTCCTTTATTTTTGGCCAACCTTCACTGATGAGCCTTTAGAATACCCCGAAAA AAGAGGATGGAAACTCTTCCTCACTTTGTTTTTTGTGTCTATATTGTTTTCCTTGATGCATATGAGGCCAATTTTTTATT TCTCAAATTTACTCATGCTGATGGTGATTATTGTTCAAATCATTTTGAGTACCCTTGTTTGCATGATTGAACCCTGATCC TAATGCCAACACTGTTCAATTGGGCTGGGTTCCTAATTTTTATTCTTTTTATTCATCAGGGAACCCCTGAGGAAAATAAG CCAGTGCCAATGGATTCCAGAGAGACACCTGAGAAGAAAAATGAACAGGTTCTATCAATTTGTTTGTTTATAATTATTTC ATTGGAATTTCTTTTTATTTTTTCTGTATAATTCAACGGAACTAAAGGAGACCAAGCCGTATTGTGTGAATGCAGAGTTT TTGGATTAGTGTATTTCATACTGAACTTGTGTCTTTTGCCCTGTGTGGATAATGTTAATTGTTTTACTTTTATCTATAGT CCGGTATGTGTTTTTTAGTTGTATGACGTTATGATTGTGAAACCTGGGGCGTTCATGATAGGTAGTTTGCAATTTAGTTA GTTAGTTGAGAGAGTTGGTTAGAGTGAGAGAGAATGATATATATGAGATTTAGAGAGAAATATAATCTTTGGGATCATTT GTAATTTGGAATTAGAGAATGGGGGTGAGGTTCTTGAATTACTCAGACTCAGCGGGTTAGGCCTAACTTCACCCCAAAAG TTAGCTTAGAAGTAAGGGTGACCCATATAAAGACTATTTTGGCCATATCTCTAGACAATGTGAGACTTCTAAAGTATCAA CACTCAGTGACGATTGTAGTTTCTGTTCTTGAATAATATCAGTTTTCTTCTTCTTCTTTGGCTGGTTCCTATCAGTTCAT TTCAACAATATACCTGAAAGTTTTACCTAATTTTGAATATTGCCATTGAACTTAACTTTCTGATTACAGGATATACTTGG AACTGCGCAAACAGTCACTGACAACTTGTCCATCCAATTGGAGAATCATGCCCTTAGTCTGGACGAGCAGGTATTTCTTT TTGCCTTCCCTTCTTTTAAGTCAATGATGAGATATCTTTTTCAGAGGGAAAAGTTATGAAAAGGGTTTGTGATAACAGCC CCACTATTAGGACATTGTTTGAGATTTATCATGTTAACTTTTGGACTATTACAGGATATTGAGGATCTAGCTGATGCTTC TGGGACTGAATTTGGGATTCCTGCAGGTTTTGATGATCAGGTATCTGTTTTAACTGATCTGAAATAGGATAAACTATCAG TATTTTTAGCCTTTATCTATGAATTACTTGCTAAAATTCTTAAGCACCTCTCATACAGATTGATATTGATGTTTCCAACA TGAGGACTTACTGGCTGTGATCTAGACGAATGTGCAGTGCTGGTTCAGCTTGGTTTAACTAACATTGGACTTCCAGAAAT GGTTTCTGTTTTATAGACAAACTATTTTTGGAAGCACTGTGAATTATATATATAGTCGTGGACTTAAAATATTCTTACAT CATAGTTCTTGTACATCCCCTTGGGACCGGATTTCATTTATATATTGTGAATAGTTCTGTTTTTATTGTTCGTTTTTCAT TTTTCCTTCTGCTACCGCTTTTCATAGGTTTTCGCTCGATCTTGAAGGTAATGTCTCTTGTTCACACCTTCAGTTGTGCA TGAAATGGA
CDS sequence (LotjaGi4g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATGGTGCTGAATCCGTGTCAAAACAGGGAAGGTTCGCTGATGATGGCGGCGGCGGCTCCCATGCAGGTTGATGG GGTCCACTTTGCCAATGGAGCTGATGAAGGGCAACATGCTCCGGCCACCGTTGCTGCTTCTGCATCCAATGCTTCTGCTC CCCACCCTCGCGCCGGTGAACTCACCATTTCATTTGAAGGCGAGGTTTATGTTTTCCCGGCGGTTACGCCAGAAAAGGTG CAGGCTGTACTATTACTCTTGGGCCAGAAGGACATACCCAATAGCACCCCCAACTCTGGCCTTTTACAACAGAAAAACTT TCCGCAAATTAAGGGAATAAATGATCCTTCCCAAAGTTCAAACCTCTCGCGAAGATTTGCATCACTTGTTAGGTTTCGTG AAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTATACTTGCCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAG AATGGACAATTTGCATCATTGAAGGAAGATTACAAATCTCCGGCTGGAAACTTGGATTCTAGCAATGGTACTCCTCCTTG CCCAGAATCTATTGAACGAAGATGCCAGCATTGTGGAACTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCAGCTG GTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGCAAAG ACTCCTTATGAACAAAATGAACGGGATACTTCAGCTGATATGAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCCGA CCAGGCTGAAGAGGGAACCCCTGAGGAAAATAAGCCAGTGCCAATGGATTCCAGAGAGACACCTGAGAAGAAAAATGAAC AGGATATACTTGGAACTGCGCAAACAGTCACTGACAACTTGTCCATCCAATTGGAGAATCATGCCCTTAGTCTGGACGAG CAGGATATTGAGGATCTAGCTGATGCTTCTGGGACTGAATTTGGGATTCCTGCAGGTTTTGATGATCAGATTGATATTGA TGTTTCCAACATGAGGACTTACTGGCTGTGA
Protein sequence (LotjaGi4g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMVLNPCQNREGSLMMAAAAPMQVDGVHFANGADEGQHAPATVAASASNASAPHPRAGELTISFEGEVYVFPAVTPEKV QAVLLLLGQKDIPNSTPNSGLLQQKNFPQIKGINDPSQSSNLSRRFASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRK NGQFASLKEDYKSPAGNLDSSNGTPPCPESIERRCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAAK TPYEQNERDTSADMKPSTTEPENSCADQAEEGTPEENKPVPMDSRETPEKKNEQDILGTAQTVTDNLSIQLENHALSLDE QDIEDLADASGTEFGIPAGFDDQIDIDVSNMRTYWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 42 | 334 | 293 | 1.5E-149 | – | |
| PANTHER | 42 | 334 | 293 | 1.5E-149 | – | |
| ProSiteProfiles | 54 | 89 | 36 | 13.496 | ||
| SMART | 54 | 89 | 36 | 2.3E-8 | ||
| Pfam | 56 | 88 | 33 | 9.6E-11 | ||
| Pfam | 125 | 166 | 42 | 7.5E-15 | ||
| ProSiteProfiles | 125 | 167 | 43 | 12.729 | ||
| MobiDBLite | 164 | 192 | 29 | - | – | |
| Gene3D | 188 | 252 | 65 | 5.8E-12 | ||
| ProSiteProfiles | 189 | 248 | 60 | 9.565 | ||
| SMART | 189 | 242 | 54 | 9.5E-14 | ||
| SUPERFAMILY | 191 | 245 | 55 | 1.47E-12 | – | |
| CDD | 194 | 237 | 44 | 1.51142E-15 | ||
| Pfam | 195 | 231 | 37 | 3.0E-14 | ||
| ProSitePatterns | 195 | 222 | 28 | - | ||
| MobiDBLite | 238 | 294 | 57 | - | – | |
| MobiDBLite | 240 | 255 | 16 | - | – | |
| MobiDBLite | 271 | 293 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0040200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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