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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0041000 |
| Transcript ID | LotjaGi4g1v0041000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | myosin-binding protein (Protein of unknown function, DUF593); TAIR: AT5G16720.1 caldesmon-like protein (Protein of unknown function, DUF593); Swiss-Prot: sp|Q0WNW4|MYOB3_ARATH Myosin-binding protein 3; TrEMBL-Plants: tr|A8W458|A8W458_LOTJA DUF593-2 protein; Found in the gene: LotjaGi4g1v0041000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4833443..4834903) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAATCATAGTTAACCCTTAATACATTAACTCATGATATGTGGGTGTCTATGGTGAGAAAACAGAATGTCTGAAATGG TCCAAGTCACCATAACTGATGCCTACACATCTCAATCACAATCACAATCATCATCTCAATCTGCTTCTCCTTCCTTCACC GAATTCCCATCTCATCATCGTTCTCGTTCCTCTGTCATGCAGACTCTCCCTCCTCCCTCTTGCATCAGAGATTTCTGTTG CTGCTGCTGCTTTTCCCTCTCATGAATTTCGCTCTCGCCTTCAATCTCCTCACCGAGTTCGGATGTGGCTACGTTCTCCT CACCTCCTTCTATCGCCTCCTCAACTTCCTCGGCATGGTTCTCACGTTCGCCTTCTGTTTCAAGGTTTTGCGATTCAGCT GGCGTTGTAAAAGCTCCATACGCTTCCTCTGCGATTTTGGAGGCATACCCAGATTGAGTTTGTGCTTGGACAATGTGGTT TGGGAAGTTTCTGAACCGAAGGTTGCACGTTTGGAAAATGGGCGTGACCCCAGTTCGAGTTCTTCGGTCAAAACGAGGGC CAGCATTGCCGGGGAGAAAGGGAATGCTAATTCAGAAGATGGGTCTGAGAATGAAAGAGAAATTGGTAATGAGGACGAGG TGTTTGATGTAATGACTCTGAGAAAGTTGGTGAAGGCTGCGAGGAAGAAAGCCAATGTGGCGTGTGCAGAGCTTGAGGAG GAAAGGACGGCGTCATCCTCGTCCGCGGAGGAGGCAATGGCGATGATTCTGCGGCTTCAGGGGGAGAAGAGCTCGGCTGA AATTCAAGCGAATCAGTTCCGCAGAATGGCGGAGCAGAAGCTAGAATATGATCAGGATGTGATTGAGTCTTTGGAGTGGT CGATCACACAGCGTGAATCTCAAAGGAGTGTGTTGGAAGATCAGCTGGGGATTTTGAGGAAGGAATTGAAGCAGTATATT AGGGAGGATGAAATTAACCTACTTGAAGTGGATGATAGAAGTAGGGGTAGGGGTTCTTCTGGATGTGATCAAGATGATTC TGTAGTTAGTCATTCTGAAACTGAATCACAAACCTAGCAAGTTCCCAAGGTTGTTATATAGAATGCATCTACGTCAGTTT TATTCTGACATGTTTTGGTATAGTGTAAATTGTAATAATGTTGAGCCTATATAAATTCTTTAATTTTTTCTTTTTTGGCA TGCTGGATTAGGCTTAACTTTCAGGTTCACTAGTGTATAAATTTGTGAGTAGATTTAATGAAGCACTTAACGTTGCAAGG ATCTGAAGCTTGTATAGGCTACTAATTTCTACCATGTGTGCAGTGGAGTGGAGATAATGGATTAGCCTCTTTTTGGTTGA TTGAATGATTGAATTGCATTTAGGCACTGCATCTAGGATATGATTCTGATGCCTGTGGAATTGGACATTTAGTTTGTCAC TAATGTACAAGCCCTTTAGCC
CDS sequence (LotjaGi4g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCGCTCTCGCCTTCAATCTCCTCACCGAGTTCGGATGTGGCTACGTTCTCCTCACCTCCTTCTATCGCCTCCT CAACTTCCTCGGCATGGTTCTCACGTTCGCCTTCTGTTTCAAGGTTTTGCGATTCAGCTGGCGTTGTAAAAGCTCCATAC GCTTCCTCTGCGATTTTGGAGGCATACCCAGATTGAGTTTGTGCTTGGACAATGTGGTTTGGGAAGTTTCTGAACCGAAG GTTGCACGTTTGGAAAATGGGCGTGACCCCAGTTCGAGTTCTTCGGTCAAAACGAGGGCCAGCATTGCCGGGGAGAAAGG GAATGCTAATTCAGAAGATGGGTCTGAGAATGAAAGAGAAATTGGTAATGAGGACGAGGTGTTTGATGTAATGACTCTGA GAAAGTTGGTGAAGGCTGCGAGGAAGAAAGCCAATGTGGCGTGTGCAGAGCTTGAGGAGGAAAGGACGGCGTCATCCTCG TCCGCGGAGGAGGCAATGGCGATGATTCTGCGGCTTCAGGGGGAGAAGAGCTCGGCTGAAATTCAAGCGAATCAGTTCCG CAGAATGGCGGAGCAGAAGCTAGAATATGATCAGGATGTGATTGAGTCTTTGGAGTGGTCGATCACACAGCGTGAATCTC AAAGGAGTGTGTTGGAAGATCAGCTGGGGATTTTGAGGAAGGAATTGAAGCAGTATATTAGGGAGGATGAAATTAACCTA CTTGAAGTGGATGATAGAAGTAGGGGTAGGGGTTCTTCTGGATGTGATCAAGATGATTCTGTAGTTAGTCATTCTGAAAC TGAATCACAAACCTAG
Protein sequence (LotjaGi4g1v0041000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFALAFNLLTEFGCGYVLLTSFYRLLNFLGMVLTFAFCFKVLRFSWRCKSSIRFLCDFGGIPRLSLCLDNVVWEVSEPK VARLENGRDPSSSSSVKTRASIAGEKGNANSEDGSENEREIGNEDEVFDVMTLRKLVKAARKKANVACAELEEERTASSS SAEEAMAMILRLQGEKSSAEIQANQFRRMAEQKLEYDQDVIESLEWSITQRESQRSVLEDQLGILRKELKQYIREDEINL LEVDDRSRGRGSSGCDQDDSVVSHSETESQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 7 | 269 | 263 | 7.0E-78 | – | |
| PANTHER | 7 | 269 | 263 | 7.0E-78 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 23 | 43 | 21 | - | – | |
| Phobius | 44 | 271 | 228 | - | – | |
| MobiDBLite | 84 | 121 | 38 | - | – | |
| MobiDBLite | 87 | 110 | 24 | - | – | |
| ProSiteProfiles | 128 | 226 | 99 | 20.433 | ||
| Pfam | 132 | 222 | 91 | 2.7E-30 | ||
| Coils | 134 | 154 | 21 | - | – | |
| Coils | 215 | 235 | 21 | - | – | |
| MobiDBLite | 243 | 271 | 29 | - | – | |
| MobiDBLite | 254 | 271 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0041000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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