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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0041400 |
| Transcript ID | LotjaGi4g1v0041400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein; TAIR: AT1G23850.1 transmembrane protein; Swiss-Prot: sp|B1HSY5|SYK_LYSSC Lysine--tRNA ligase; TrEMBL-Plants: tr|I1KSZ6|I1KSZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0041400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4863749..4865052) extracted from Lotus japonicus Gifu genome v1.2.
CATATTGTTATTAGTGTGTGAGGTGCTGATATGGAGAGTGAAAGCAAACAAGTTAAGCAGCATGAGATGGAGGTCTTGGA TATCCTCAAGGAAGCTGTAAAAGTCTATGTCAAAAACATCAACTTCATCACCTTCACAATTGTCACTTCTCTTCCTTTCT TTTGTGTTATGATTTACTTTGAATTGTTGTTCCAGAAAACTGTGGTTGAGGCCTCAGAATTTCTCTCACAGAAAACTGCG GATGAGACCGTAGAAGTTATCTCACTTCTACTGTCTGAGGATAAAGCTGATTTTAATTATGTGCATGAACTTGGATCTTT CATAGATAAAATTTTCAGTAAGGATTATCTGCCTGTTCTGATTCAACTTGGATTCATTTACCTTGTCCCTCTTCAAGTTC TAGAACTATGTTCTGCAATTTTAACTATGGATTTAGCCTCAAAGCTGCGCTCAGGAGACAATAACCTGAGTCTCACTCTC AAGCAGATGTTTCAAAACTCCATTATTGATATATCAATCATGAAAGGAACATTTATCACTTCTTTGTACATGCTCTTTTT GTCGGCGTGTCTCTTGATTGCATTTCCATGGACATTGAATAACTTTTATTGTTTGTCTGAGGCTTTTGGGGACTACATAT TTTCTGCCATAATTTCATTAGTTTGCTGTCTAGTTCTTGCAAAGTTGTTGATGGTGTATTTGGAATGGAGTTCTATTTTG AATATGAGTATTGTAATATCAGTCCTGGATGGTATATATGGTTTTGGGGCATTAAGAGTTTCATATGCCTTCAGCAGAGG TAATCAGAAGAGAGGACTCTTTTTGATGCTTGTTTTCTTTGTTTTGGGACTTTGTTTAAGGTTATCATGTCTATCCCTTG AAAGCTATGAAAGAGGGATTGGAATTTTTGTGCAAATTGGGGTCCTCACTGTGGTAAATACACTAAAATGGGTGTCATGC ATGATTTACTTCTATGATTGCAAGAAGAGGACAATGGAGAAGAAAGTTGATGAGGAATTGGGTAAAGCTATTGAAGAATG GATCTTACAGGTTGGCTCTGAAGTAGTGATGTTTTGATGTAAGAGTTAGTGATGAGAGTTGGAAATCTTCATTTCCATGA GCCAGAATAATTAATAGGGAGACTGTTTATCTGAAGCTTAAACCAGGATTAGATTATAATAATAATACATGGGGGTAAGT TGATCACCTCCCATATTCAATTGTATTTGTCTTCTAACTAATTTATCCTTTCAACCCTCTTATCAATGGTTTAAAAATAA TTTTTTGAAAAAAATGCACACTCT
CDS sequence (LotjaGi4g1v0041400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGTGAAAGCAAACAAGTTAAGCAGCATGAGATGGAGGTCTTGGATATCCTCAAGGAAGCTGTAAAAGTCTATGT CAAAAACATCAACTTCATCACCTTCACAATTGTCACTTCTCTTCCTTTCTTTTGTGTTATGATTTACTTTGAATTGTTGT TCCAGAAAACTGTGGTTGAGGCCTCAGAATTTCTCTCACAGAAAACTGCGGATGAGACCGTAGAAGTTATCTCACTTCTA CTGTCTGAGGATAAAGCTGATTTTAATTATGTGCATGAACTTGGATCTTTCATAGATAAAATTTTCAGTAAGGATTATCT GCCTGTTCTGATTCAACTTGGATTCATTTACCTTGTCCCTCTTCAAGTTCTAGAACTATGTTCTGCAATTTTAACTATGG ATTTAGCCTCAAAGCTGCGCTCAGGAGACAATAACCTGAGTCTCACTCTCAAGCAGATGTTTCAAAACTCCATTATTGAT ATATCAATCATGAAAGGAACATTTATCACTTCTTTGTACATGCTCTTTTTGTCGGCGTGTCTCTTGATTGCATTTCCATG GACATTGAATAACTTTTATTGTTTGTCTGAGGCTTTTGGGGACTACATATTTTCTGCCATAATTTCATTAGTTTGCTGTC TAGTTCTTGCAAAGTTGTTGATGGTGTATTTGGAATGGAGTTCTATTTTGAATATGAGTATTGTAATATCAGTCCTGGAT GGTATATATGGTTTTGGGGCATTAAGAGTTTCATATGCCTTCAGCAGAGGTAATCAGAAGAGAGGACTCTTTTTGATGCT TGTTTTCTTTGTTTTGGGACTTTGTTTAAGGTTATCATGTCTATCCCTTGAAAGCTATGAAAGAGGGATTGGAATTTTTG TGCAAATTGGGGTCCTCACTGTGGTAAATACACTAAAATGGGTGTCATGCATGATTTACTTCTATGATTGCAAGAAGAGG ACAATGGAGAAGAAAGTTGATGAGGAATTGGGTAAAGCTATTGAAGAATGGATCTTACAGGTTGGCTCTGAAGTAGTGAT GTTTTGA
Protein sequence (LotjaGi4g1v0041400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESESKQVKQHEMEVLDILKEAVKVYVKNINFITFTIVTSLPFFCVMIYFELLFQKTVVEASEFLSQKTADETVEVISLL LSEDKADFNYVHELGSFIDKIFSKDYLPVLIQLGFIYLVPLQVLELCSAILTMDLASKLRSGDNNLSLTLKQMFQNSIID ISIMKGTFITSLYMLFLSACLLIAFPWTLNNFYCLSEAFGDYIFSAIISLVCCLVLAKLLMVYLEWSSILNMSIVISVLD GIYGFGALRVSYAFSRGNQKRGLFLMLVFFVLGLCLRLSCLSLESYERGIGIFVQIGVLTVVNTLKWVSCMIYFYDCKKR TMEKKVDEELGKAIEEWILQVGSEVVMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 333 | 333 | 1.2E-142 | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 333 | 333 | 1.2E-142 | – | |
| Phobius | 30 | 50 | 21 | - | – | |
| TMHMM | 32 | 54 | 23 | - | – | |
| Phobius | 51 | 105 | 55 | - | – | |
| Phobius | 106 | 131 | 26 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 132 | 171 | 40 | - | – | |
| TMHMM | 168 | 187 | 20 | - | – | |
| Phobius | 172 | 190 | 19 | - | – | |
| Phobius | 191 | 201 | 11 | - | – | |
| Phobius | 202 | 223 | 22 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 224 | 228 | 5 | - | – | |
| Phobius | 229 | 250 | 22 | - | – | |
| Phobius | 251 | 261 | 11 | - | – | |
| TMHMM | 262 | 281 | 20 | - | – | |
| Phobius | 262 | 286 | 25 | - | – | |
| Phobius | 287 | 291 | 5 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 292 | 315 | 24 | - | – | |
| Phobius | 316 | 348 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0041400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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