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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0043000 |
| Transcript ID | LotjaGi4g1v0043000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|G7JTZ1|G7JTZ1_MEDTR Helix loop helix DNA-binding domain protein; Found in the gene: LotjaGi4g1v0043000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5104346..5108524) extracted from Lotus japonicus Gifu genome v1.2.
GGACAAATGTTAACACAAGGAGGAAGCATATAAGCTGCAGCAGCTGGGGCATAGCAGACTCACATTAAGGAGGCCCAGCA ACAAAGAAAGCTGCCACATCTGTTGATGAGTAAGCTTCTTATCAACCTTCACATTATTATTCATTAAGAACTTTAGACTC TTTGAGTGCATGTTCCAAAGAATATACTTGATTTGATAATGGTGTATGGGAATGAATTTCATGGTTTGCATATGGTGCTT TCTTTTTTTCTACAAGGCTTGATGGTCATTTTAACAGAAGTTACCATGACCTAGTTAGCTTACTCTTAATTACTTCTCTT CCAGGACATACCTTGAGCTCTTTTGAGTGCAAAGTTGGTTTTCTCATGGAGATTTCATCCATTACAGGGTTACCTGATCA GGTAAGACATATATCTCTTGTACATTTATTGTTTATTCTTGGAACTTGGAAATAGGCCAAATTCATTTATGTTCTCTAAG TTGATGGTGGCTTTATCAGTCATTTATTACATTGACAATGACAAAATTTAATATATATGGAGCCATTTAAAACATAATGA GTTAAACAAAATATGGTATTAGTTTGGAAAACAAATATTTAACAAAGGAGTGAAATATGGATATACTTGAATCTTTCTGG CTAGATTTTGGTTGATGAAATGTCTAGTAACATTCTGAAGGTTTTGTTAACAGGAAATGATGGGGGATCCTACATTACTC CATCAGTGGCACAGTGATGATTCTAGCTTGCTGCCAATGGCTGCTGCTTTTGGAGAGACTTTGCAACATCATTCATTCAC TTATCCAAACTTCAACCTCATAACTCCCATGAATCAGTTTCAGTTGGGTTCAAATCACATGAGTCAGTTTCAGTTGGGGT TGCAAAAACTTAAGGATGAGATGGGTTGTCCAACAATCAATATCACAACTCCTCTGGACATGATCTCTCAAGGAAACCTT GAGGATCAAAACTATGTCTTCAAGACCTGCCAGGAGGATCACAAAAAGATATTGACACGTCCAAAACTTTCTCAACCTCA GGACCACATTATAGCTGAAAGAAAGCGGCGAGAGAAGCTCAGCCAGCAGTTCATTGCTCTATCTGCCCTTGTCCCTGGAC TACAAAAGGTGCAAAAAGTTTAGTTATTGTGAATTTAATTTAGCTTTATATGATCTGTGTTTACTGCTTGCCTTTCATAG TAACTGTATATGTTGAACACATTCGAGTCTTTAGTATACGCATGAATATATAAAACGGTCGCGCTATTGGACATCCAGAC GCCACAATTTGCTGTTGTCGCCCGGGTTTCACAAGAATAGATGTCCAACAATCATTTTCCTATAAATTTTGTCTGTTTAT GTAGACTTATAAATAAATACATTAGTTTCTTTTTTATATATGTTTCTACTAACAGATGGACAAAGCTTCTGTTCTTGGAG ATACTATCAAGTACCTGAAGCAACTGCAGGAGAAAGTGAGGGCTCTTGAGGAGGAGCAGAACTTGAAGAAAAATGTGCAG TCTGTGGTAATTGTAAAGAAGTCTCAACTTTCCAATGATGTTGAAAACTATTCTCTAGAATCTGGTGGTTCCTTTGACAA GGAACTGCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTTCTCATACGAGTTCACTGTGAGAAGAGCAAAGGAGTGG TAGAAAAAACAATCCATGAAATTGAGAAACTCCACCTAAAAGTCATCAATAGCACTGCTTTGACATTTGGGAGCTGTGCC CTTGATATAACAATTATTGCTCAGGTAAATTTTGTACCTTCTAATGGCCCAAAGCTGGAAGTTCATACAAATCAATATAT GAGAAAATCAATTGAGCTCCAATGTAGTATCTAGTATCTACCAAGGGTTTTATATGTTCAAGTTATATTTTTACCATTTT TGGATGCGAACCAAAGAACACTTATTGAAGCTTATTCAGTGCTTTTTTTAGTAGATAAGCTCCAATAAGCTTCAAAGAGC CTGTATCCAAACAGGATCTTTGACTACAATGAATGATTACAAACTTTCTCAATTTCTATCTATGCATACCTTTTCATTAT TTTTTCCACCAAATTGTAAGTGTCTTTCAATATGGAAATTATTTCTGCAATTTGCAGATGGATGTGGGATTTTGCATGAC AGTCAAGGATCTTGTGAGAAAACTACGTTCAGCTTTTACATCTTTCATGTGAGGATGTTCTTTTAGTTCATACTAAACTG TAGAAAGACCCCGAAAGCATGATAAAAATAGGAGTTAAAATCAACTCTTCAGCAATTTAAAGTTTCAGTTCTTCTGTAAT GTTTCTGTTTACAAGGCCTGTGATGTCATCCATCCAAGCTTGCTGTGTTTTTGCATGGTAAACATGTTGACCATGTTAGT GCACTCAGCTAAAGCAGGAAATCTGGCTTCACTGGTTCCATATCCAATAATCATGTTGAATCTACTACCTCTTTTGCTGG GTGGTTTCTAAACAGGCCCACCCTGCTTCATTGGTATGATGAGGCTTTTTATTTGTCTTCTTATGTTGTGTGTCGGTCAA GTGTAAACTAATCATAAAAATACATGACACCAACTTTCTGTACTCAATTTGTAATCCTCAATAATTTAAGGAAGAAAGAA AGATCTTGAAATATTTATTCTATTTTTCCTCTGAAGTCCAGTCTCGCTTTAACAACAACAACGACAACACAACAACAATA AAAGCTTTATCTCATTAAGTGAAGTCGGCTATATATATGGATTGCACGACGCCGTTGAGCTCGATAACTTTGAGTATTAT TGATGAGGTCATTTTTAACAATATCTTGCAATGTTTTTTTTACCACCCTCGGCCTCTCTTCACATGACTAAAGACCATAT TAATAATCAACCATTCTCCCCGGTGCCTCCAAAGGTGGACCAATAGCTTTATTTGTAAAAACTTGAGTAAAAAAGTTATG TAATTCTCAACGCACTTATACAAAGTACTGTTCTTAAAAAAATCTAATATGAACAAAAGGGGAGTATTACACAAGATTCT TATAGGATGCTTCTTGCTATGACAAATCTCTAGTTTCTGATGAAGTCTATCCCCTTCTGAATGCTTCCAACTAACTCTCT CTTTGCCTTTTCCAGTCCAATCCTGTTAAGTATTAAACAGCAAAAGTTTCACTTCTTGTGTTTCTTATTGCTTCTAACAA AGAAAATAGGTAATAGTTCAATAAACTACTGTCATACCTTTCATACTCATTCAGGGGACCCAGTTGATATATCTCTTCTG CTCCAGCGCGACCGAGACGTACCTTGGTTGCAAAGAAGGGAAGTTCTGTAACCTATTGAAGACATGAGCTATTGTTAAAT GAGATCCGAAATAGAAGATGATGAAAATATATGTACAAGGGAAAACAAGGACTTGAAAATGGCACCTGAGATTCAACAAA AGAACACTCCACCACCCCGGCTTCTCCTTTCAAACCGCGGAGGCATGAATTTGCAAACTTGGCAGCAGCATACGCCTACA CATTAAGAGCGGAATTTCAAGTGGTGTTAATTGATAATGCTTGCAAGTGTAAAAATATGAAAACAAATTATTAACCATTG ATAGTGTTGCAGAACCAGCTCCAGCTTTTGCCTGTAACATGAATAGTTGTTATTAGATTATGATGAATCAAATCACAACC AGATATAAAGAGTAAATAAGATTCTGTGTTTAAGATTTCTTCAATAAACTCATGGATATAAAAATAATGTAGAGCAACTT TCATACCTAATTAAGTCATGGATATTAAAATGAATAAATTAGAAGAATGCAGATGAGTTAGAAAATTTCGTTCAACGGAA GTTAAGAAAAACAAACACTTTCATCCTAATCCAACTACTTTGATACATGGACTTTTTTACCTAGGAAAGCCGCAAAAGTC TGTTAAATGTCATCCTAACTTCAATCAAAACATGCACTTAATTTATCAATATATTAATGCAAAACAAATCTTGTAAATCA TACCTTTTTAACTCTAATCACATATTTAGGTTATAGCATAGATTTATGTGACATACCTCAACAACTTCTGTTCCACCATT TTGGATGCGATTTGTCAGATAATCAGTTTCTTCTGCAGTGAAGCTACTGGGAGGCTTAACCTGTAAAATCCAAGTTTGAA GAATGATTAGTGCCCTGTT
CDS sequence (LotjaGi4g1v0043000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACATACCTTGAGCTCTTTTGAGTGCAAAGTTGGTTTTCTCATGGAGATTTCATCCATTACAGGGTTACCTGATCA GGAAATGATGGGGGATCCTACATTACTCCATCAGTGGCACAGTGATGATTCTAGCTTGCTGCCAATGGCTGCTGCTTTTG GAGAGACTTTGCAACATCATTCATTCACTTATCCAAACTTCAACCTCATAACTCCCATGAATCAGTTTCAGTTGGGTTCA AATCACATGAGTCAGTTTCAGTTGGGGTTGCAAAAACTTAAGGATGAGATGGGTTGTCCAACAATCAATATCACAACTCC TCTGGACATGATCTCTCAAGGAAACCTTGAGGATCAAAACTATGTCTTCAAGACCTGCCAGGAGGATCACAAAAAGATAT TGACACGTCCAAAACTTTCTCAACCTCAGGACCACATTATAGCTGAAAGAAAGCGGCGAGAGAAGCTCAGCCAGCAGTTC ATTGCTCTATCTGCCCTTGTCCCTGGACTACAAAAGATGGACAAAGCTTCTGTTCTTGGAGATACTATCAAGTACCTGAA GCAACTGCAGGAGAAAGTGAGGGCTCTTGAGGAGGAGCAGAACTTGAAGAAAAATGTGCAGTCTGTGGTAATTGTAAAGA AGTCTCAACTTTCCAATGATGTTGAAAACTATTCTCTAGAATCTGGTGGTTCCTTTGACAAGGAACTGCCTGAAATTGAA GCAAGATTTTGTGAGAGAAATGTTCTCATACGAGTTCACTGTGAGAAGAGCAAAGGAGTGGTAGAAAAAACAATCCATGA AATTGAGAAACTCCACCTAAAAGTCATCAATAGCACTGCTTTGACATTTGGGAGCTGTGCCCTTGATATAACAATTATTG CTCAGATGGATGTGGGATTTTGCATGACAGTCAAGGATCTTGTGAGAAAACTACGTTCAGCTTTTACATCTTTCATGTGA
Protein sequence (LotjaGi4g1v0043000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHTLSSFECKVGFLMEISSITGLPDQEMMGDPTLLHQWHSDDSSLLPMAAAFGETLQHHSFTYPNFNLITPMNQFQLGS NHMSQFQLGLQKLKDEMGCPTINITTPLDMISQGNLEDQNYVFKTCQEDHKKILTRPKLSQPQDHIIAERKRREKLSQQF IALSALVPGLQKMDKASVLGDTIKYLKQLQEKVRALEEEQNLKKNVQSVVIVKKSQLSNDVENYSLESGGSFDKELPEIE ARFCERNVLIRVHCEKSKGVVEKTIHEIEKLHLKVINSTALTFGSCALDITIIAQMDVGFCMTVKDLVRKLRSAFTSFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 84 | 75 | 5.2E-131 | – | |
| PANTHER | 10 | 84 | 75 | 5.2E-131 | – | |
| PANTHER | 81 | 319 | 239 | 5.2E-131 | – | |
| PANTHER | 81 | 319 | 239 | 5.2E-131 | – | |
| Gene3D | 135 | 205 | 71 | 3.3E-16 | ||
| ProSiteProfiles | 140 | 189 | 50 | 15.688 | ||
| Pfam | 144 | 190 | 47 | 1.5E-9 | ||
| SUPERFAMILY | 144 | 208 | 65 | 1.83E-16 | ||
| CDD | 145 | 194 | 50 | 1.1103E-11 | ||
| SMART | 146 | 195 | 50 | 4.0E-14 | ||
| Coils | 179 | 206 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0043000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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