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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0045300 |
Transcript ID | LotjaGi4g1v0045300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | transmembrane protein, putative (DUF1218); TAIR: AT4G21310.1 transmembrane protein, putative (DUF1218); Swiss-Prot: sp|A6WDG1|YBEY_KINRD Endoribonuclease YbeY; TrEMBL-Plants: tr|A0A151RKS4|A0A151RKS4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0045300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5344001..5345293) extracted from Lotus japonicus Gifu genome v1.2.
CTAACATCCTTTACTGCACCTTATTTGAATTTTAGCAGAATGGTTAGAAATTATGGCTTCCTTGTCTGCATTCTTCTCAT GGTCATGGATGTTGTTGCTGGAATACTTGGAATTCAAGCAGAGATAGCCCAAAACAAGGTAATTCCAAAGGAAACATGCA TATCTCAATTAAGGTTCCATTGTTGAGAACATTGACAAGTATTTGATATTTTTTTGGGATGAAAACAGGTGAAGGATTTG AAGATGTGGGTGTTCGAGTGCAGGGACCCAAGCTATCATGCTTTCAAACTAGGACTTGCTGCTGCCATTCTCTTGGCCTT TGCTCATGCAATTGCTCACTTGCTTGGTGGGTGCATTTGCATGTGGTCCAAGGAAGAGTACCAAAGTTCCACGGCCAATA GACAATTAACATTTGGTTTTCTTACTTTCTCGTGGTAAGTGCAATTTGTTAAACCCTTAAAATCAAAATAAATTTTGAGA AGAAGCTTGCATGAGTGGCTTATGTTTGATAATTGATTCTTATGAAGAAAAAAAAAACTGATTCAAATACACTATAAGTT TTCAACATCATTTATTGTGCTCTTCGGTTCTCCATAATTCTTCTCAATCGGGAGAAGTGTACCTTCTATGGTTATCGTCT AAATTCCATATCATGCAAGCCGATTTGTATTCCAGTTAGGTTTCATGTGAAAATATTTTATTTTTTAACTCAATGTGTTA TTTTAATTTCTCATACAACCCCCCAAATGAAAAATAAACAGACGCTCAAGTCAAAAAATTTGCTTTGCACCATATAAAAC TCATTCTACCAATTTGGTCTCAAGTTAATTGAACTTATTACTCTTTCTAGGATTATATATGTTTCAAGTTCCTGACTTTG TAAGAGATGTTAAATTCCAAAAAAAATCTTCAAAATATCTACCAAATCATTGCTTAATTGAAGAGCTTAAAATTTGATAT GCTAGTTACTGAATGTGGTTGTTCTTTGCAGGATAGTATTAGCAGTTGCATTCTCCATGCTTATCATAGGCACATTAGCC AACTCAAGATCAAGAGAATCTTGTGGGATATCAAACCATCGTTTTCTATCAATTGGAGGGATTTTATGTTTCATTCACGG ATTGTTCACTGTTGCCTATTATGTTTCTGCAACGGCCACAAGAAGGGAAGAAAAGAGACAAAGAAACACCGTTGTAGACT TGTAGCTGTAGGCCACCATTAATCATTTACTTAGTGCCTGATTGTATTGGTTTGTTCTGACAAGATAATTATTTGCATAA AGTTTGTTACAAA
CDS sequence (LotjaGi4g1v0045300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGTGTTCGAGTGCAGGGACCCAAGCTATCATGCTTTCAAACTAGGACTTGCTGCTGCCATTCTCTTGGCCTTTGC TCATGCAATTGCTCACTTGCTTGGTGGGTGCATTTGCATGTGGTCCAAGGAAGAGTACCAAAGTTCCACGGCCAATAGAC AATTAACATTTGGTTTTCTTACTTTCTCGTGGATAGTATTAGCAGTTGCATTCTCCATGCTTATCATAGGCACATTAGCC AACTCAAGATCAAGAGAATCTTGTGGGATATCAAACCATCGTTTTCTATCAATTGGAGGGATTTTATGTTTCATTCACGG ATTGTTCACTGTTGCCTATTATGTTTCTGCAACGGCCACAAGAAGGGAAGAAAAGAGACAAAGAAACACCGTTGTAGACT TGTAG
Protein sequence (LotjaGi4g1v0045300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWVFECRDPSYHAFKLGLAAAILLAFAHAIAHLLGGCICMWSKEEYQSSTANRQLTFGFLTFSWIVLAVAFSMLIIGTLA NSRSRESCGISNHRFLSIGGILCFIHGLFTVAYYVSATATRREEKRQRNTVVDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
PANTHER | 3 | 127 | 125 | 2.6E-68 | – | |
PANTHER | 3 | 127 | 125 | 2.6E-68 | – | |
Phobius | 12 | 34 | 23 | - | – | |
TMHMM | 15 | 37 | 23 | - | – | |
Pfam | 20 | 107 | 88 | 1.3E-20 | ||
Phobius | 35 | 54 | 20 | - | – | |
Phobius | 55 | 76 | 22 | - | – | |
TMHMM | 58 | 80 | 23 | - | – | |
Phobius | 77 | 95 | 19 | - | – | |
TMHMM | 95 | 117 | 23 | - | – | |
Phobius | 96 | 116 | 21 | - | – | |
Phobius | 117 | 134 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0045300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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