Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0045900 |
| Transcript ID | LotjaGi4g1v0045900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor-like protein; TAIR: AT1G11480.1 eukaryotic translation initiation factor-like protein; Swiss-Prot: sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B; TrEMBL-Plants: tr|I1KQS4|I1KQS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0045900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5386001..5392462) extracted from Lotus japonicus Gifu genome v1.2.
GCAACATCCCATGAATCATCATATATAATAGCACCAAAACAAATCTCAATTAAAAAACTAAGAAAAATAAATATCACACA CAACAACACATTCTCTTCCTCTCTCTCACACTCCCTTCACTTTCCTTCGCTTTTTGCACCCAAACCCAAACCCAATACCA ATCCTCATCGCGTTCCTGTTCTCCGCTTCTTCCACCAATCCATTCCTCCCCCTCGTGGGGTTGCTTTCCCTCTCTTCCTC TCTCCCTTTGCTTCGCGGTTTCTCAACCAACACCATTAGCATCTGGGGTTACGATTCCTTCTGGTTTTTTCCTTTTTTTG AATTTGTGTGGAGGAGGGTTTGAAGGAGGGAGAATGTCGAAGAAGAAAGTCAGTGGCAATACCATGACGCTCAAGGACTT CCATGGCGGTTCTATACCCTCTGATCTCCCTCTTCCTTCTGCTCCCGGCGTGTAAGTTCCTACCCCTTTATTGCACTTTC AGTTTTTTTCATCACACGGTTTAAATTTTCAATCTTTTTCGCTTTATTTTGATTTTCCTTCAAATGGGTATCCTGATTGA TGTTGCGTTTGTGAAAAATGAGAGAATTTGATATTTGAGGGAAAGAGAGAGAGTGAGAAATTAGATCTGTTGATTTTAAT TTTGTGTTACTTTTATGTTCTTTTGATTTGATGAGTTGTTTTCATTGATGGATCTGTTTATGCAATCTCAAAGTGAATTT TTTTTTGTCTAAATTTTTGTTTTTGGGATGTTTTAACAGAACTGTGAGGACTTCAGATCGTTCTGGATTTGACCGGCCTT CGTCGTGGGGAGCCCCGATGGGGCGGCCGGATCATTGGTCTCGGCCGCACACGTCGCCGGCCACTAGGCATTATGATGAC AAGACCCCTTTTCTGTCACACACTGCCCCAATTGGCAGGAATTTTGATGAGGATGAGAGGAAGCCCCTTGATGGTGGTTC GGCTCCTCGGAGAACTGTTAGTGATGAGAGCACCCGTGCCCCCCCGCCTTCTCGTGTTGAGGTGAAGCCTGAGTATGGAC TGGGAGGGAGTTCATTGGGTAGGCAAGTGGCTCCAGTGTCTCCGGCTGCTGTTGGGACAGTTAATTCATACTCGGCGAGG CTTACTGAAGCGGTTCACACGGGGATGAATACCCATAGTTTAGGAGGTAGTAAGGAGCGGGGAGCTGCTACTGCTGCTGG TGGTGGTGGTGGTGGTGGTTATCCAAATGTATGGTCAATGAGGAAGGAGGTAGCAAATGCTGTTGAGGCTGAGCAATCTG CTCGGTCTGGTGCTAATGCTGTTTCAAAGTTGGCTCATGCAAGTGCTCTTGAGAAGGTGTCTTCTGGTAGATGGCAGTCA AAGGCAGCCCATTATCAGAATGATGCTGAGCTGGTTAGATCTCCGGAAGCGGAGAGCAGACAACGTGCCAATGTTAATGT CAACAATGCTTACAATAGGATGGATGCAGTTGGTGAAAAGGAGTATTATGATGCAATGCTAGCAAGGCAAGCTGAAAGGG GTTTAGGTATTGATAACCAGATGCAAGGTGGTAGGAACGAGTTACTGGATTATGAGAAGTCTGGGGTTTCCAAGTATCCA GAAGTACGGCCAAGAAGTGTACCTTATCAGTCTGATGGGGTTCAGCCTGCTCGAAATGTAGGCAAACTTGTTGGGTCTGA ATTGAAGAACCCTGTACCTTCCGAACCAACTGAAAGACCTAAACTAAATTTGCTACCAAGGAAAAAGCCACTGGAAAGTT CAGAACCTTCAGTTACAGAATATCCCCAGGTATTAGCATGTTCATTTTACGAGACCCCCTTCTTCAGGAGTTTTTTGTTT TTTTTTGCAGAGGAGTGGAGGTATTCTTATATTTGCTTCATGAGTTCTCTAATTTTCTGTTGTAGGGATATCGTCTGGGT AATGATTCTAGCCATGTTGAAACTGCTCATCAGGCACATGGCCATGCCAACTTTGTCAAGCCTGTATCAGCTGGAACTGA GAGTGGAAAGGAGCTAGGACAGCGACCGAAGCTGAATTTGAAGCCTCGGTCTCAGCCCCTTGAAAAGTTGGAAGTTAACA CTGAAACAGGCAGGTTGGTTGCATGAAACAGTGACTTGAGATGTTTTTAACTTTGCTATATATTAATTTTATCTTGTGGT GGATGTGTTTATGTGTTGTCTATGAAACATTTCCAATTGGTTCAAACTTTTTTTTGTACTGTGCCCATAGGCCCTACTGC AACAGGCCAAAGGTATATAAAATTCACTGTGAGTCTGTGAATAATGAAAATTATAAAAGAGTGACTGCCCTTCAGTCGTC ACTCAAACTCTATTCCAAATACTGCCAATGCCTTTTGTGAAAGATATTATGTTTTCCCTGTTATTCAATTTGGAAGGTAT ATTCGTGCATGGTTTTTCAGGTGAGGCCAACATGTCTGGTCAGTACAAGCCACTTATAAAAATTATTTTAGGGGGTTAGG CTTAGTGTTATCAAATATCTGCCATGGCGGTTTTTTATCTATCTGCCATGGCAGATATCCTGTCAAATGGTCGCCATTTC CGCCTTATTCCCGCCATTATTTGTCATGTATGGCAGAATTTTGGCTTTCTGCCATGACCCGCCATCCGCAATAAACAAAA GTAGACTGTCTCTGATAGAGTAAAGAATACTAACGTGACATTTGAGTAAGAGGTTGCATGTGTTCTTTATGTGAGGAAAT TCTCCTTTTCTACAACAATATTTTATGTTTAGAATGATCAAGGAGGAAGGAGGATGATGTGGTTTTAACACTTACTGCAC AGGTCTCTCATACTCCTAAGATATAAGAAATAACGTTATAACTTATAATTTTTTAATCAATTTTTTAATTTTAATGAAAA TAACAAAATAGAAGGGGAGTGTTGGTGCAGCGGTTGGAGTTGCTGCTGTTTCACTATGAGGTCATTAGGTTCGAGTCTTG GAATCAGCCTTCTGCAAATGGAAGGTAAGACTGCCTACAATAGAACCATAATGGGACTGCCCCTTCCATGATGTGAGCTT TACATCACTGGGTTGCCTTTTTTCAAAGAAAATAACAAAAGGGGGACTTCCATGCATTCTTGAATGTGTGAATAGGGAAT GCTGACTTCCCCATTCTTGTCCATTTAATTGGAAGTTGGAACAATGTAAAATCTTAGAGGTTCACTGTGGTTTTCTTAAT TTTAAAGGCTATGAATTGGAGGATAGCTGTGTGCTTACTAAATTCCAAGGATGATGGGAAGTGGGAAGGTGAAACGAAGG AGGAAAACGTAGTTGTTAGTTCTAAAAGATTTCTTTAGATTTGTCACTTGACCCCAGCAAAGTGACTTAAAGGTCAATGA GATTTATTTTCTTTTAAGGAATTGTAGAATGGTAGCATCTGCACAAGTAGATGGAGATTAGTTAGTATGTAATAATACTA TGTATACACAAAACAATGTTTATCTCTTCATTTTTCTAATTTAGTTACTAATCATTTAATTTCTTGATGGGCCATATTCA TTTTTATCTTTCTCTGCCTCCCTCTTTGTTCCTTACCTACCTACCCAATTTTTTTTTTCATTTTGATATATTTAAATTTT CTCAAAAACATTTGAAAAAGAAACCATGGAATTACATTTATGTGTCTAAAATGTGGAGATCTTGTAAGTACAGTTCTTCG TTTTTGTGGCCATTGGTCTTTAACTCTATCAAATTTAATAATTAGTATATTGTAAAGTTTTGCAACAGTTCAGGAAGGCT AGGCTAAGCCTTGTTTTGACCCTGGAATTGGAATTGAGCCCTGAAATTCTATATTTCATAATAATGGAACACTTTAGAAT TGTTTAGATCCCACATGTACTAGAGATATAACCAAAGTAGTGCTTATAAAGATTTGTTAATCTTCATCTCGAGTTAGCTT TTGAGGTTTAGTTAGGCTTAGCCCAGATTCAAGATGGTGTCTGAACCTATCCCAGATGTATTGGGCCACCCACCACTTTC CAACAGTCTACCTACGTCCTACACTCTCCAAACTTCAGAGGGCATGAGTGTGTTAAGATCCCATAACGACTAGAGATATG GCCTACGTAGAGCTTATAAAGGCTTGGGCAATCCTCACCTCACGATCTAGCTTTTAGGGTTGTGTTAGGGTTAGCCCAAA TTCTAGAAGAGTTAAAAATAATTGAAAAGCAACTAAATGATGCCGTTCTGAATTCTTAAACCAGATCCTAGTAATTTCTT TTTGAAAATCAGATCCTAGTAATTTCAATTGCAAAAATAATTCTTTTGTCCTACAATCTCCTTGCTCCGTGAGAGGTGTG TGTTGAGATTCCACATTGACTAGATATATGACCAAAGTAGAGATTATAAAGGCATGGGCAATTCTTACCTCATGATCTAG CTTTCAAGGTTGTGTTAGGTCTAGCTCAAATTCAAGAAGAATTATAATTCTATCACAATTCCAACTTCCAAGTAATTCAA AAACAACTAGGTTCTGCCATTCTCAATTGTTAAACCAGATCTGAAGAGTTTCAATTCCAAAAATAGTTGTCTTATATGTT TGCCTTTATCCTTGTCAAATGAGGAGTGCTTCATGTTGTTGTGAAATGCAGTTATGGAGACTGTTAGTGAGACCCATAGC ACAGAATGTAGAACTTATTTTCAGTTTCTCATCCAATTTTACACGTCACTTGTGATATTCTGGGAGTATAATGTTTCTGA TGTGTTGTCAGGCATTATGCACATTTTGAAGGCTTCTAACTTATGCTTTTGTCACAAAGCCAAGTGCGCACTAAGTATTG AATTTGTAATATCTCAATTTCATTGTGAATATTTGGTCAATACTTGTTATGAAATTTCATGGGTTGCTTTCTGTAAGTTC ATTTGGTTAATTATTCTTGGCTTCCTGTTTAATAATTGAACCACCTATGGAAATGTTTCAGGAATGCTTTATTTGGGGGA GCTCGCCCACGTGAACTAGTAAGTTCTTTCAGTTATTTATTGTCTTAATGGCTGTTAAAATTTGTGCTTTATTATTTTTC GTGTGCCAGAGAGCATCTGCATCAGTTTCACATTTTCACACATGTTCATTATTCATCATGTTAAAATGTTGCTGATCTTT CCCGTAGGTATTGAAGGAGCGAGGGGTTGATGACGTTGCGATCAACACTTATGATGTGGTTGAGAATTCAAATAGGTAAA GGACTTGTTTTGTTTGTATATGATTCCACTTGACGCCAATGGTGATCCAAGTCTGATTCATTGCTTGCCAATATGTGATG TGTTGTGTGAAGGGTTGAGCCTAACATTTTGAAGGCTGAGAAACTTCCTGATCCTTCAATCCAATCTCGACACGGTGAAA AGGCTAATGATGCTCCTCTTGATCAAAGAACAGGCAGAAAACCCGAAAGGAAAGAGCAAAGGGTAGATGGTGAGAGAGGT CATTCACAGAAGAGGAATTGGCGTGGTGGTGATAATCGGAGAAACGCAAGGGAGACTGAGAGGCAGCAGCCGGCCCCTGA GAGGCCAGCTTCACCCGAGACATGGCGTAAGCCTGTGGAGCAGCCAAAGCCATCTCAGGGTGTTGGCGGCCCGCGCAACG GTAGAGCGGCTTCAGCAGTTGAACTTGCCCAAGCATTCTCCAGATCTGTATCTGATCCGAAAGTAAATGACAGGTTTTCA GGTCAAAATGGTCTGAACACTGGCCGTACACAACAAATGCCTTTTTCGCGGCTTGTTGGTCCAACACCTAGGCCTCAGAT CAATGGTTATTAGGTCTTTGATGGAAAATTTGGACTCATCACTGTCCTATTTCTTGAAGGCAGCATAGGATTCGTGCATA CCATGAAATTGCTGAGCACTTGCTTGGAGTGGCTTTATTCTTCATCATTTTCTCATTCACAAGAATGAATGAAAGAATTA GGTTGCATTTGTCATCATCATGACAATCTACAATCACGTTGTTTTACTTGACCCATATAATTTGCTACCAGAACACTAAT TTTTTCTTGGTTTATTTGGTGGGGGAGGAGAAAGAGCTGTTGACTAATGAAAGCTGTAGTAGCACAATTATAGCATAAAT TGTTTGTTTTAGCTTCCTCACCTTGCAGCTATCTTGGATTATTTATCGATCATGATTAAATCTTTTATTTCTTTGTTCAT TCTTAATTTATCTGCATTAGAGTATATAATATCAACATAAGGAGCCTCGGTCACAAAAATCAACAGTTAACTTGATTAGT CAGGTGTGCTTGAATATAATATCATCATGAGTTTCAGTTTGTCTATAGTTTAAGGTATGAAGGAATAACCATTTTATTGG GTAACCCTTATGTGATTTGCAATAACCTCAGTCCGAAAATTTAGGGAACAAAGTAGGGTGCTTATCAATTTGGTCAAACT TGATAAGCAACTTGGTTGTGATGGACTGAAAGGTAAGCACGACGCCAATAGCCTAAGCCAGA
CDS sequence (LotjaGi4g1v0045900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAAGAAGAAAGTCAGTGGCAATACCATGACGCTCAAGGACTTCCATGGCGGTTCTATACCCTCTGATCTCCCTCT TCCTTCTGCTCCCGGCGTAACTGTGAGGACTTCAGATCGTTCTGGATTTGACCGGCCTTCGTCGTGGGGAGCCCCGATGG GGCGGCCGGATCATTGGTCTCGGCCGCACACGTCGCCGGCCACTAGGCATTATGATGACAAGACCCCTTTTCTGTCACAC ACTGCCCCAATTGGCAGGAATTTTGATGAGGATGAGAGGAAGCCCCTTGATGGTGGTTCGGCTCCTCGGAGAACTGTTAG TGATGAGAGCACCCGTGCCCCCCCGCCTTCTCGTGTTGAGGTGAAGCCTGAGTATGGACTGGGAGGGAGTTCATTGGGTA GGCAAGTGGCTCCAGTGTCTCCGGCTGCTGTTGGGACAGTTAATTCATACTCGGCGAGGCTTACTGAAGCGGTTCACACG GGGATGAATACCCATAGTTTAGGAGGTAGTAAGGAGCGGGGAGCTGCTACTGCTGCTGGTGGTGGTGGTGGTGGTGGTTA TCCAAATGTATGGTCAATGAGGAAGGAGGTAGCAAATGCTGTTGAGGCTGAGCAATCTGCTCGGTCTGGTGCTAATGCTG TTTCAAAGTTGGCTCATGCAAGTGCTCTTGAGAAGGTGTCTTCTGGTAGATGGCAGTCAAAGGCAGCCCATTATCAGAAT GATGCTGAGCTGGTTAGATCTCCGGAAGCGGAGAGCAGACAACGTGCCAATGTTAATGTCAACAATGCTTACAATAGGAT GGATGCAGTTGGTGAAAAGGAGTATTATGATGCAATGCTAGCAAGGCAAGCTGAAAGGGGTTTAGGTATTGATAACCAGA TGCAAGGTGGTAGGAACGAGTTACTGGATTATGAGAAGTCTGGGGTTTCCAAGTATCCAGAAGTACGGCCAAGAAGTGTA CCTTATCAGTCTGATGGGGTTCAGCCTGCTCGAAATGTAGGCAAACTTGTTGGGTCTGAATTGAAGAACCCTGTACCTTC CGAACCAACTGAAAGACCTAAACTAAATTTGCTACCAAGGAAAAAGCCACTGGAAAGTTCAGAACCTTCAGTTACAGAAT ATCCCCAGGGATATCGTCTGGGTAATGATTCTAGCCATGTTGAAACTGCTCATCAGGCACATGGCCATGCCAACTTTGTC AAGCCTGTATCAGCTGGAACTGAGAGTGGAAAGGAGCTAGGACAGCGACCGAAGCTGAATTTGAAGCCTCGGTCTCAGCC CCTTGAAAAGTTGGAAGTTAACACTGAAACAGGCAGGAATGCTTTATTTGGGGGAGCTCGCCCACGTGAACTAGTATTGA AGGAGCGAGGGGTTGATGACGTTGCGATCAACACTTATGATGTGGTTGAGAATTCAAATAGGGTTGAGCCTAACATTTTG AAGGCTGAGAAACTTCCTGATCCTTCAATCCAATCTCGACACGGTGAAAAGGCTAATGATGCTCCTCTTGATCAAAGAAC AGGCAGAAAACCCGAAAGGAAAGAGCAAAGGGTAGATGGTGAGAGAGGTCATTCACAGAAGAGGAATTGGCGTGGTGGTG ATAATCGGAGAAACGCAAGGGAGACTGAGAGGCAGCAGCCGGCCCCTGAGAGGCCAGCTTCACCCGAGACATGGCGTAAG CCTGTGGAGCAGCCAAAGCCATCTCAGGGTGTTGGCGGCCCGCGCAACGGTAGAGCGGCTTCAGCAGTTGAACTTGCCCA AGCATTCTCCAGATCTGTATCTGATCCGAAAGTAAATGACAGGTTTTCAGGTCAAAATGGTCTGAACACTGGCCGTACAC AACAAATGCCTTTTTCGCGGCTTGTTGGTCCAACACCTAGGCCTCAGATCAATGGTTATTAG
Protein sequence (LotjaGi4g1v0045900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVTVRTSDRSGFDRPSSWGAPMGRPDHWSRPHTSPATRHYDDKTPFLSH TAPIGRNFDEDERKPLDGGSAPRRTVSDESTRAPPPSRVEVKPEYGLGGSSLGRQVAPVSPAAVGTVNSYSARLTEAVHT GMNTHSLGGSKERGAATAAGGGGGGGYPNVWSMRKEVANAVEAEQSARSGANAVSKLAHASALEKVSSGRWQSKAAHYQN DAELVRSPEAESRQRANVNVNNAYNRMDAVGEKEYYDAMLARQAERGLGIDNQMQGGRNELLDYEKSGVSKYPEVRPRSV PYQSDGVQPARNVGKLVGSELKNPVPSEPTERPKLNLLPRKKPLESSEPSVTEYPQGYRLGNDSSHVETAHQAHGHANFV KPVSAGTESGKELGQRPKLNLKPRSQPLEKLEVNTETGRNALFGGARPRELVLKERGVDDVAINTYDVVENSNRVEPNIL KAEKLPDPSIQSRHGEKANDAPLDQRTGRKPERKEQRVDGERGHSQKRNWRGGDNRRNARETERQQPAPERPASPETWRK PVEQPKPSQGVGGPRNGRAASAVELAQAFSRSVSDPKVNDRFSGQNGLNTGRTQQMPFSRLVGPTPRPQINGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 633 | 633 | 1.2E-197 | ||
| PANTHER | 1 | 633 | 633 | 1.2E-197 | – | |
| MobiDBLite | 1 | 136 | 136 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 62 | 76 | 15 | - | – | |
| MobiDBLite | 85 | 99 | 15 | - | – | |
| MobiDBLite | 162 | 182 | 21 | - | – | |
| MobiDBLite | 337 | 375 | 39 | - | – | |
| MobiDBLite | 404 | 448 | 45 | - | – | |
| MobiDBLite | 468 | 633 | 166 | - | – | |
| MobiDBLite | 487 | 547 | 61 | - | – | |
| MobiDBLite | 592 | 620 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. |
Expression pattern of LotjaGi4g1v0045900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…