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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0046400 |
| Transcript ID | LotjaGi4g1v0046400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O81900|DYT1_ARATH Transcription factor DYT1; TrEMBL-Plants: tr|V7BTB2|V7BTB2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0046400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5441881..5443315) extracted from Lotus japonicus Gifu genome v1.2.
GATGACTTATGTTTTAATGCTGAAAGTGGTAACAACAGGGGAAGGATGGGAAGGAGGCGCTATGACAACGACGAAAACCA AACATTCAAATCGAAGAACCTGGAGGCGGAAAGGAAGAGAAGAGAGAAGCTCAGTACCAGGCTCTTGATGCTGCGGTCTT TAGTACCGATTGTCACAAATGTGATCACTAAAACTTCACTTTCTCTTACATATATATAAGTCCTTTATCTAATAATTTCA TTCATTGTTCTTTGTTCTTATAGCTGGGTTAGTTTTTTATTAGCGGATCAAATATGGAATGGAAAATTGATTGTGAATTT TAATTTTTGTTTCAGATGAACAAGGCAACGATTATTGACGATGCAATCACTTACATTAAGAAATTGCAAGAGGAGGTTGT GAGCCTCACCCAAGAGCTTCAGGAAGTGGAAGTAACCTTAGAAATTTCAAAGCCAAAGGTAGATGAACTTGTTGATGCTG CAGAAGAGATGAAGAAATGGGGGATACAGGTTATATCTACATATTTGTTAATTACTTTCATAATTTAGCTGAATGAACTC CTCATCTTTAAATTCAATTACTAATCATGGTCGTGTTTCTTTCTACAGGAAGAGGTACAGGTGACACAAATGAATGGGAA CAAATTGTGGGTGAAGATGATCATTGAGAACAAGAGGGGGACTTTCAGGAAATTGGCGGAGTCTCTCGATACTTGTAGCA TTGCAATGATGGACACCAATCTCACAGCCATAAAAGGAGCCTTAGTAATAACAACCTGCATACAGGTGACACACATTTCT AGTAACAAACTTGATACATCCATAAAAATCTCTTTGCTGGATTTTCATGTTTTGATGAGTGTCTTACTCTGCTTTTTATT TCAATAGCTCTAGTAATGTTGGAAGATTTCTGATTTTATCATCAATATTTGTTCAAGTATGGTTTAGAAATGTGTGTTCC AACGAAGGGAATGAAATTTCCACTTCATATAACAGGAGAGTAGTTTATGTTGTACACTCTCAAAGCCATTAGAAGAAACT CAAATGAACTTTGATTTATCTTTCTACTGCTTACAAACACTATGAGAAACTTTACAGCAGGCTAGTAAGTTATGTGCTTT TAATTTGAGAAACTTGGAGATTTTTTTAGAAGTTGATTCTATGTTTGTTATTTTTTCAGGGCATGGATGGTGAAGCACTT GAAGTTCATCAAATCAAACAATTGTTGCTAGAAATTGTCAGAGCCATTTAGAGGAACCGGATACATTGTCTCTTATGCAT TCATCCATCAAATTGAAATGAGCTTTAGTTTATTTTATTGTTCAATAGTACGATTGGACAAGTTTAATATGCTTCAGTTA TGTATGTCAAGAGAACTCTAAAACTACATGCTTGCAAATTGATGATAACTAGACTCAAATCCGCACGATCGGTGG
CDS sequence (LotjaGi4g1v0046400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGAGGCGCTATGACAACGACGAAAACCAAACATTCAAATCGAAGAACCTGGAGGCGGAAAGGAAGAGAAGAGA GAAGCTCAGTACCAGGCTCTTGATGCTGCGGTCTTTAGTACCGATTGTCACAAATATGAACAAGGCAACGATTATTGACG ATGCAATCACTTACATTAAGAAATTGCAAGAGGAGGTTGTGAGCCTCACCCAAGAGCTTCAGGAAGTGGAAGTAACCTTA GAAATTTCAAAGCCAAAGGTAGATGAACTTGTTGATGCTGCAGAAGAGATGAAGAAATGGGGGATACAGGAAGAGGTACA GGTGACACAAATGAATGGGAACAAATTGTGGGTGAAGATGATCATTGAGAACAAGAGGGGGACTTTCAGGAAATTGGCGG AGTCTCTCGATACTTGTAGCATTGCAATGATGGACACCAATCTCACAGCCATAAAAGGAGCCTTAGTAATAACAACCTGC ATACAGGGCATGGATGGTGAAGCACTTGAAGTTCATCAAATCAAACAATTGTTGCTAGAAATTGTCAGAGCCATTTAG
Protein sequence (LotjaGi4g1v0046400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRRRYDNDENQTFKSKNLEAERKRREKLSTRLLMLRSLVPIVTNMNKATIIDDAITYIKKLQEEVVSLTQELQEVEVTL EISKPKVDELVDAAEEMKKWGIQEEVQVTQMNGNKLWVKMIIENKRGTFRKLAESLDTCSIAMMDTNLTAIKGALVITTC IQGMDGEALEVHQIKQLLLEIVRAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 185 | 183 | 7.6E-70 | – | |
| PANTHER | 3 | 185 | 183 | 7.6E-70 | – | |
| Gene3D | 5 | 78 | 74 | 1.3E-13 | ||
| SUPERFAMILY | 11 | 82 | 72 | 4.58E-16 | ||
| ProSiteProfiles | 13 | 62 | 50 | 14.602 | ||
| CDD | 15 | 66 | 52 | 6.1941E-11 | ||
| Pfam | 17 | 63 | 47 | 3.7E-9 | ||
| SMART | 19 | 68 | 50 | 2.7E-12 | ||
| Coils | 52 | 79 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0046400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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