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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0048800 |
| Transcript ID | LotjaGi4g1v0048800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G21500.1 transmembrane protein; Swiss-Prot: sp|B1KG87|GCSP_SHEWM Glycine dehydrogenase (decarboxylating); TrEMBL-Plants: tr|A0A0R0IHR6|A0A0R0IHR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0048800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5935436..5938031) extracted from Lotus japonicus Gifu genome v1.2.
CACCACTCACCCCTTACCCTTTTTTTCCATGCCTCCTTCTCACGCAAAAAGGGCTAATAAACCCCACAAGAAAACACCCT TTCTAAAGCCCCATGCACAGTACCCCTGCTTTTCAGTCCCATCAATATTTTCTGACTTTTTCTCATCATCCAAACTCTAC TTTCTCTTCTATCATGATCTTGATTTTCTTCTTTCCAATTCTCTAGTTATCAGCGAAGAGAAAACTAACACACAATTTTC GCCAATGGAAGAGAGAAGGTTTCTTTATGAATTGAGGTTCATTTTATCCATATATCTTCACAAATTCATGGACTCCCTTT GTACACAAACTATTTCCTTTCTCTCTGCATTATCTTCAGATCCTCTGTTTTCGTGCATCGTGGCCTTTTCCACCTTGGTT TACCTCTACTTGCCTCACCTGTTCTTGAAGATTGTTCTCTCACCAGTGCTCCTTCTAACTGCGATTCTTTTACTTATCTT ACTCCGCCTCGGTGCAATTCAGAATTCCCAACATGAACCAAAGGAAAATCAAGACAAAGTCGAACCAATCTTCAACGTGG AAAACAGAGCGTGCAAAGAAGAAAAACAGAGTTCAAGTCCCATTGAACCAGAGGAACCCAATTCTCATGAGAAAGTGAAC CAGTGGGTAAATTCATGTAGCAATACAGAAACAGAGCTTGAATCCCAAATGGGTGTCAAGGATAGTTCGTTTTTTGTTGA ATGGGATGTAACTGCACCATTGGAAGTGATATACGAAGAGTACGAAGGTGAAGAAGAAGAAGAAACAGGGGATGATCCAA GTTACGAGAGAGAAGAAAACCAGAACATGGGTATGCTCAGGTACCCTTCGTTGTCACGTTACTACCCGGAGTCGGAATCT GATAGCTCGTCGGAGAATGGATTTCCGGCGACGGAGGATTGGGAATCGCCGGAGAATATTTGCTACCGGTGGGATGAAGA AGACAGAGAAGGGTTGATTGAGATAGCTTTGGATGGTTGCAAGAGGAAGAGTGAGTTTCAATTTCAGGAAGAGAACATGA TTGAGATTGATATTTCTCCGACGAGGCACAGAGAACTTTCCGGCGAGGACAAGGTTTTTTCCGGTGAGATCAGTTGTAGT TAATGAGATATTTATTGAAGATTGATTAACTTTAGGGTATGTTTGGATTGATGGAACATAATGGAACGGAGCGGATCTTT CAAACCCTCTCTCCCTTCCGCTCCACTTCATCCCCTTCCCCCAATCCAAACGAAGCTTTAGTGGGTTATCATGGTTTTTG GGCTGGGGGAAGGGGAGAATTCTAATCTTGTTTTTTTATTAGTATTATTTTTTTCTTTTTCTTAAACTGATCAATGATCA TGTATGATTGAGGTGAGTTCAATTGGTCTAGGTTCAATCTTGTTAGACGAACTGATCCTCCTCTTCTTTCTTTAATTAAT GAAATATTTCGTTTGCCCGTAAAGAAATGAAAAAACAAACTTATAATCTGAGACTTTTTAAGTACAATGAATTGCAGAAC ATGAACTTTCAAAATAATTCGTTAATATGAGATATATACATAGTTATGATAGGTAAGCACCATACATCATAACATATTGT AGGCACCTAAATTTTTTCTCTCTTTCATTTCTTATGTTATATTTATATTATATTTATTATTTCTCTAGGGAAGATTGGAA TTCAGGAACATATGTCTTTCAAATATAAGTTGGTTGGAACATGAAATCTTCATTCGTGGACCATGGAAAAGGCCTGGTTA ACACTGGAATATTCAAAATTGGATTGAAAATGTGGTAATAATTTGGTGTTTAAATGCTTTTATGCGAGAGGACACTTTTA AGAGTCTTTGCACTCCTTAGAAAGATAGACTGGTCAAACTACTATGGAAAAATAAATCTAGGATACTTAAACACGAGGGA GAGACTGATATGATTAAGAAAGCATTAGGTGACACCTCACTGGAACACGTGACCACTAATATGTTTAAAGAAAGATATGA GCTTGATTCGGTTAAGCGGAGCAACCAAGCCCCCAAACTGCCAACACGTTTTAGGGTTTGAGTGAGTATTTTAAGAAGGG GAAATCATGTGTGAGAATGAGGATTTATTTGATTTGGTTATGTTCTCTCGTTGTACCCTTCTCCCTGTTTTCTTTCCTTA TGCTATTGAGAATTTTTTCCTTCCTGTAATGTTTTGGACAACTTCTTCAATTCAATAATATTGCTATTGTTTCCTTCATC TCATTGTAAAATTTGTGATTAGAGACTTTCTAGTTTCTAAAATTTTGTTGCAGAATTTTATTTCTTAACATTGGTGCTTT CATCGAGTGTTGAACATGTCAAAAAACACACGCTTGAAGGAATTGGCTTCCGATTTGAAACGAGCTTCTGAGTTATTGGA GGTTCATGATAATAAGCACAAGGCGACCCAACAACATTTGGCTTGTGTTGGAGGTTCATGATAATCAGCCAAGGCGACCC AATCTTTGTACTCCTAAAAAATTAACTAGCACTGGTGTGTTGGGCTTGATGTAGTCGTGTTTCTCATTTTTAATTAAGCA TGATTGTGCTCTATGATCTCCACAATTGTGTTTCCC
CDS sequence (LotjaGi4g1v0048800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCCTTCTCACGCAAAAAGGGCTAATAAACCCCACAAGAAAACACCCTTTCTAAAGCCCCATGCACAGTACCCCTG CTTTTCAGTCCCATCAATATTTTCTGACTTTTTCTCATCATCCAAACTCTACTTTCTCTTCTATCATGATCTTGATTTTC TTCTTTCCAATTCTCTAGTTATCAGCGAAGAGAAAACTAACACACAATTTTCGCCAATGGAAGAGAGAAGGTTTCTTTAT GAATTGAGGTTCATTTTATCCATATATCTTCACAAATTCATGGACTCCCTTTGTACACAAACTATTTCCTTTCTCTCTGC ATTATCTTCAGATCCTCTGTTTTCGTGCATCGTGGCCTTTTCCACCTTGGTTTACCTCTACTTGCCTCACCTGTTCTTGA AGATTGTTCTCTCACCAGTGCTCCTTCTAACTGCGATTCTTTTACTTATCTTACTCCGCCTCGGTGCAATTCAGAATTCC CAACATGAACCAAAGGAAAATCAAGACAAAGTCGAACCAATCTTCAACGTGGAAAACAGAGCGTGCAAAGAAGAAAAACA GAGTTCAAGTCCCATTGAACCAGAGGAACCCAATTCTCATGAGAAAGTGAACCAGTGGGTAAATTCATGTAGCAATACAG AAACAGAGCTTGAATCCCAAATGGGTGTCAAGGATAGTTCGTTTTTTGTTGAATGGGATGTAACTGCACCATTGGAAGTG ATATACGAAGAGTACGAAGGTGAAGAAGAAGAAGAAACAGGGGATGATCCAAGTTACGAGAGAGAAGAAAACCAGAACAT GGGTATGCTCAGGTACCCTTCGTTGTCACGTTACTACCCGGAGTCGGAATCTGATAGCTCGTCGGAGAATGGATTTCCGG CGACGGAGGATTGGGAATCGCCGGAGAATATTTGCTACCGGTGGGATGAAGAAGACAGAGAAGGGTTGATTGAGATAGCT TTGGATGGTTGCAAGAGGAAGAGTGAGTTTCAATTTCAGGAAGAGAACATGATTGAGATTGATATTTCTCCGACGAGGCA CAGAGAACTTTCCGGCGAGGACAAGGTTTTTTCCGGTGAGATCAGTTGTAGTTAA
Protein sequence (LotjaGi4g1v0048800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPSHAKRANKPHKKTPFLKPHAQYPCFSVPSIFSDFFSSSKLYFLFYHDLDFLLSNSLVISEEKTNTQFSPMEERRFLY ELRFILSIYLHKFMDSLCTQTISFLSALSSDPLFSCIVAFSTLVYLYLPHLFLKIVLSPVLLLTAILLLILLRLGAIQNS QHEPKENQDKVEPIFNVENRACKEEKQSSSPIEPEEPNSHEKVNQWVNSCSNTETELESQMGVKDSSFFVEWDVTAPLEV IYEEYEGEEEEETGDDPSYEREENQNMGMLRYPSLSRYYPESESDSSSENGFPATEDWESPENICYRWDEEDREGLIEIA LDGCKRKSEFQFQEENMIEIDISPTRHRELSGEDKVFSGEISCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 101 | 101 | - | – | |
| PANTHER | 91 | 352 | 262 | 8.1E-88 | – | |
| Phobius | 102 | 125 | 24 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 152 | 22 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 153 | 364 | 212 | - | – | |
| MobiDBLite | 185 | 200 | 16 | - | – | |
| MobiDBLite | 185 | 204 | 20 | - | – | |
| MobiDBLite | 244 | 258 | 15 | - | – | |
| MobiDBLite | 244 | 298 | 55 | - | – | |
| MobiDBLite | 279 | 294 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0048800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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