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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0050400 |
| Transcript ID | LotjaGi4g1v0050400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT4G02550.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|Q9FFJ8|LIMYB_ARATH L10-interacting MYB domain-containing protein; TrEMBL-Plants: tr|K7LCA7|K7LCA7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0050400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6103300..6108824) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAGGTTGTGTTTGGATGGGGTGATTTTTGGGGGGAATGTAATTCTAGAGGGTATTTTAAATCCTTTAAATTGAAATA CCTGGTTTGGATGTCTATTTGTGGAATTCTGAAAATACTGGTAATTAAAAGAGGTAATTTAATGAAGGGATTATCGGGTA ATCAAAATACCCTCAAAATTGGAAGTAATTGGAAAATCCCTCACTGCTCGTGTCTCTCACTCTCTCGTTCTCGCTCCCAA TCTCACTCTCTCTGCAATCTCGCTCTTTCGATCTCGTTCTCGCTCCCGATCTCACCCTCTCGCGATCTCGTTCTCTCGTT CTCGCTCTTCCGATCTCACCCTCTCGCGATCTCGTTCTCTCGTTCTCGCTCTCCCGATCTCACTCTCTCTGCAAATCCCG ATCTCACTCTCTCTGCGATCTCGCTCTCTCGTTCTTGCTCTCCCGATTCATGGAGTGGCTCTATCTTCCCTCTTGATTCA GGTAAAATCTCTTGATTCTTTCACAAATTTTGCAGTATTGTTGTTGTGGTTGTTGTTGTTTTTTCGATTTGATTTTGTTT TTGGAGTTGAAAATATCTGTTTTGTTCTTGTCTTGAGTTTTGTTCGTTGATGCTAGTACTGGGTTTGTGATGTTTTTTTT CTCCATTTTGTGCATGGTTCAGAAGCAGATGAACATAGGTGAGGAAGGCAATAGTTTCTATTTTTTTACCAAAACAATAA TTAGAGTTACATAAGAATTGCTCAAACTGAATCTGAAAATTGACTAGGCCTCAATTCATGTGTAAATCAAAGGTACTTTA ATCCTCTGTTGCTCTTGGCCTTGACCCACCTTGATTTCCAACCACCCTTTTGGAATTTCTTTGGTCCTTCCATGGTGATG GTATGCTTTTGTAGGTGTATTTCTAGATTAGGATGGTTTTGGGGAGAAACAAAGGGACAAAAACCCATTATGCAGAGAAG GAGTTTGATGAATAAAGAGTATTTTTATAGCAAGTAGCAATAGCATGATGTGTGTTATATATAATAAGGTGCATTGCATT CCTCAAGCATTATTCAAGTTGTCATGACAGTGATTTGATTTGTGTTTATTGTCACTGTCTTTTGCTAATCCTTGATGATC GGAAAAATATTTCAGGCTACTGCTATAAGTGGATACACTAGCAACTCTGCTTCTGCCAAGAAGTGCAGAAAGAAGAAGGT AAAGTTATTCATTTCATCTTATAGTCAAGCCTGTGATTTTAATATTTGTAGTGAGTTTTATTTCAAAACAACCATGGACA TATTAGGATAGAAAGAACTTTTCACTACACTTCAAACGTTCATTGCTGCTGCTATATTGTCTTGCTATAATAACTAGGTA GTATTAAAAGATGAATTAATTTATCAGCAAAAAGAATTTATGGAGTAAAGGAGATTTTATTACATTTTCATTGCTGTGGT TATTCCGGAATAGATTAAGTTTAGTTGGAAAAGGGGTCCATCAACTCTGCTACTATGTCCAAGTTTAGTTTTATAATCTG CACAGAGATAAGAATTGCAGCTTATAGTCTGAATTGATTTTAGAACATTTCATCATAAAACCAAACACATATATATGTTT ATTTCATTTGGTCAATGGATGAGGGGGAAAGCTTTTTCATGAGTAGCTTCCATATTGTCTATGAGAAAAGAGAAATTTAT TGAAACATGTTAGAAATCACTCATCCATAATGGAAAACTAAGACAAGAGGAAAAAACTCAATGCTTACTTATTTTTTTAT TTATTTTAATGAATCTAACCGAAAGCTCCACGCTACTATTTAGAGAATGTTTTAACTTGACTCTTCTCATTTTCTTAGTG AGCTTGTACACATCCCTTGTCCTTTTTAATCACATCTTATCCATTTTTATGTTTAAACTAGCTGATTTTGAATCTGATTG AGTTAGCTTCTCTTACTTCCTATTTTCTTTATAGTGTCATGCAATATTGATGTTTTATTATATGTTTTTTTTAGTTAACA AATGGATCTTAGAGTAGTTGACACTTCAGTTCTTTTACGAAAACGTAAAAGAAATGAAGAAGAAGAAGAGGCAAAATTGC AGGAGCAAATAGCATTCATTGTTGCTAGTGTCATTGCTATGCTTTTAGGTGTAGTAGCTTGGTATCATGAGATGCATTTT GTTAAGGAACCGTCCCGAAATTGGGAATTGGAAAGAAGCAATTTCCTTAATCGTCTGTATAGAGGAACCGAAAGTGACTG CATTGAACAGTTAAGAGTCAGTAAAAGGGCATTTTTTAAACTTTGTGGAATTTTACAAGATAAAGGACAGTTGGTAAGGA CAAGAAATGTCCCAACGATTGAAGCAGTGGCAATGTTTTTGCATATCCTTGCTCACAACCTAAAGTATAGAGTAGTGCAC TTTACCTATTATAGATCCAAAGAAACAATAAGTAGGCAATTCAACAATGTCCTACGAGCTGTAATGAAAGTGAGTGGGGA ATATTTGAAGTTTCAAGACCATAATAATCTAGAGGGCTCTGAGGCATACAAATGGAGATGGTTTCAGGTAAACTTATCAT AAGCTTGAGTAATTATATGAGATTTCTAGTAATTACAACTTATTTTTTATTTTTAAACTTTTTTAGAATTCGATTGGAGC ACTTGATGGGACACATATTCCAGTAACAGTGGCAGCAGAAGATAAACCTAGATACCGTAATAGAAAGGGTGACATCTCTA CGAATGTGTTAGGGGTTTGTGGTCCAGATTTAAAGTTTATTTACGTGTTACCTGGTTGGGAAGGCTCGGCAGGAGATTCA CGAGTATTGCGAGATGCTTTACGTCGTCAAAATCACCTTCAAATTCCGAATGGTAATATTCTCAACCTTGATACTTTTTT TACTATATTAAATACAATTATATGATTTTTTTTCTTGGAAAAAAACCATCGCAGGTAAATACTTTCTGGTCGACGCAGGA TATACAAATGGCCCAGGATTTTTAGCACCTTATCGAGGGACTAGATATCATCTCAATGAGTGGATTGGAAACACCCCTCA AAACTACAAGGAGTTGTTCAATCTCCGTCATGAAAGTGCAAGGAATGTAATTGAAAGATCATTTGGGATATTGAAAAAAC GATGGAGTATATTAAGAACTCCATCTTTTTTTGATATAAAAACACAAATAAGAATGATTAACGCTTGTTTCGTACTGCAC AATTTTATAAGAGATGAACAACAATATGACCCAATTTTAGAGGTCCAAGACTTGGAGCTTTTATCGGTTGTTGATGAAGA GTTAACCAATCAACATGGGGAAACAATTACAAGTAATGTTGCAAATGAGATCACAACTATTCAAGTATCTGAGGCATGGA CAACGTTTCGGGACACTTTAGCAATGGATATGTTTGTTGAATATCAACATAGAAGAAACTTAGTTTAGGGACAACATGTT ATCAGTTGTCTTTGCTTTCTACCTTGTTCGCTGTTTCTATTATCTGTTTTTCCATTTCTTATGTTGTTTCTTGTTTATTT CTGTAGTTGCTTTGTTCTGTTGTGTGTTGGCTCACTTGGAAGAGCCTTGTTTCCAAGCTTTTTATCCTATTAATATTAAT TGAATGATTGATCAGAACTAACTGTGGCTTTTTATCCTATTAATATTAAAAGCTTAGTATGTTGTCTTGTATATGTATAT TCTGTTTATTTTCAGAAACTCTTCATGTTTATTTATTTTCAAACAGGGTTACAGCCAGACTAGGGACTTGGACAGTGAGG AGCTATTGGAACAGTTGCTATATCGACTTGTTGGTTGCCGGGTAATATTTTATAACTTGAGGATATTCATCATCTTTTTG TTATTTGATCTGTTTGCTGTGGACACTTCAATTAGGTTCAAGTGTTTCTATTTTACTACTGCATTTCCTTAAGTATTTCA AACTGATTCTGAGAAAATTATATATACTAGATTAGAAGCTCTCTCTCGTGTGCAAATGAATGAGTGACTTCAAAGCATTA TCTCTTTCTTCAATTCTTTGATTAGAATCACAGTAACGACACTCACTATATTATAATAATTCTTTCTGTACAATTACATA GATACAAACAAAATTGACATCTCAACCTCACCCTTCTGATTAATCATACTTATGATTTCTGCACATGATGTATTCAATCA TAGAAGCTCATTTTGCTGCTATTATCTTTGTTCAGCTCTGTAGATGTATTTCAAAATTCTTCTGGTTATTAGTAATTGTC TAATGTTTGTTTATGTTTGAAGGAGAGATGAGGGGAAAAAGGAAAATGGCGGAAGCTAGTAATGAGGATAAGAAAGATGA TAGCAGAGCTTACTTTACTTGGAACTTGGAGATGGACCGTGCACTTGCTAATATACTTAGAGATCAAAGAAGCATGGGAA ACAAAAGTGATGGTGCATGGAAAGCAGTGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGCAACTT ATTGGAGAGAATGTTAAAAACCGCATCAAGTTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGG TTTTGATTGGGATGGAACCAAATATATGATTTCTGTTACAAATGAAGATGCATGGAATGAGTATGTCAAGGTAATCATTT TTAATGTTATTACTATTTAATTAAATTAATGTTTGTGTTAGTATTAATATGCTGCCTATTTTCTTTGTAGTCACATAATG ACGCTAAGAGGTTTCGATTTAAGGTGATTGTTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGA ATTGGAGCGGAGACATCCTTGGATGCGGATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGCGGATAT TGATGAACAAAGCTCTACAACAAGGAAAAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGA TAATTACTTCAATGAATAAAGTGGCTGAGTCTTTGAGTGAATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAA GAAGTGGTTCATGATGTGATGGATGAGCTAAAGAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTG GCTTTCAGAAAATCCAAATAAGTTGGAGATTTTGAAAGCTCTTCCCATGGAGAGAAAGAAAGATTACATCTTAGCTTTTA TGCACTGATTTGTGATTTGCTATAGTTTATAGACTCATTTGTAGTGTTTCCAACTTTTCATTATGCCACTGTTGAGACTT TGTTTTATTTAATTTTCATTTGGATTGATGTTAGCACTTGTTACTGTTGAGACTTTTTTTTATTTAATTTTCATTTGGAT TGATGTTAGCACTTGTTACTGTTGAGACTTTCTTTTATTTAATTTTCATTTGGATTGATGTTAGCACTTGTTAAAAACAC AGTTTTAAATTTAAAGTAATAGGAAATGTGATATCTCCATGAATGTATTAGAAATTTGTGATCCAACTAATTTCAGATTT TTGAG
CDS sequence (LotjaGi4g1v0050400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGAAAAAGGAAAATGGCGGAAGCTAGTAATGAGGATAAGAAAGATGATAGCAGAGCTTACTTTACTTGGAACTT GGAGATGGACCGTGCACTTGCTAATATACTTAGAGATCAAAGAAGCATGGGAAACAAAAGTGATGGTGCATGGAAAGCAG TGGCATATAACACTGCGGCTCAAATGTTGTCTTCACGCTTCAATTTGCAACTTATTGGAGAGAATGTTAAAAACCGCATC AAGTTGTGGAGATCATGGTATGGCATTGTTAGTGACATCCTTAGTCAAAGTGGTTTTGATTGGGATGGAACCAAATATAT GATTTCTGTTACAAATGAAGATGCATGGAATGAGTATGTCAAGTCACATAATGACGCTAAGAGGTTTCGATTTAAGGTGA TTGTTAATTGGGATGACATTGTAGACTTGTGTGCTAAAGATAGAGCAACAGGAATTGGAGCGGAGACATCCTTGGATGCG GATGACATCATGAGCAAAGAAGCAAATGAGGATGGAGCTTATATTGCGGATATTGATGAACAAAGCTCTACAACAAGGAA AAGCAAACAACCAATGGAATTCAAAAAGGGAAAAAGTGGAGAGAAGAATGGGATAATTACTTCAATGAATAAAGTGGCTG AGTCTTTGAGTGAATTTGTGCAAGCAACTAGAAAAGGGGTGAAAAATGTCCAAGAAGTGGTTCATGATGTGATGGATGAG CTAAAGAACATTCCGGACCTTAATGGCACTCAATGGCTAAAAGCAGTGGATTGGCTTTCAGAAAATCCAAATAAGTTGGA GATTTTGAAAGCTCTTCCCATGGAGAGAAAGAAAGATTACATCTTAGCTTTTATGCACTGA
Protein sequence (LotjaGi4g1v0050400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGKRKMAEASNEDKKDDSRAYFTWNLEMDRALANILRDQRSMGNKSDGAWKAVAYNTAAQMLSSRFNLQLIGENVKNRI KLWRSWYGIVSDILSQSGFDWDGTKYMISVTNEDAWNEYVKSHNDAKRFRFKVIVNWDDIVDLCAKDRATGIGAETSLDA DDIMSKEANEDGAYIADIDEQSSTTRKSKQPMEFKKGKSGEKNGIITSMNKVAESLSEFVQATRKGVKNVQEVVHDVMDE LKNIPDLNGTQWLKAVDWLSENPNKLEILKALPMERKKDYILAFMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 24 | 119 | 96 | 4.3E-14 | ||
| PANTHER | 29 | 281 | 253 | 2.0E-102 | – | |
| PANTHER | 29 | 281 | 253 | 2.0E-102 | – | |
| MobiDBLite | 181 | 200 | 20 | - | – | |
| MobiDBLite | 182 | 200 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0050400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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