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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0050500 |
| Transcript ID | LotjaGi4g1v0050500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shikimate dehydrogenase (NADP(+)); TAIR: AT3G06350.1 dehydroquinate dehydratase, putative / shikimate dehydrogenase; Swiss-Prot: sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; TrEMBL-Plants: tr|A0A0S3T202|A0A0S3T202_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0050500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6118522..6125852) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGAGAGAATTATGATTTCTTCACACCTCATTTTGAGGTGGAAGGAGGTGGAGGAGGAGAGAGATAGGAAGAAAAGAA AAAGTATGAGAGAAAAAGTATGAGATGTGATAGATGATAAGAGGAGAGAGGTAGAAACAAAAATAGGTGGAAATGAAGTG TTTACAAAAGAGAGGACAATACAGCAATCAAATCAAAACACAATTCAACCCAACAACTCCCTCTCTCTCTCTCTCTCACA CACAGTTGTTGTTGTTGGTCACACCACCTACCCATCTCAAACAAACCCCATTACCAAACATTTCTGTAAGTAACTAACTG ACTCATCTTCTCCCTTTTTCTCTTCACTTCTCTCTGCAAATCAAATCAATTCAAAGGATGAGGAAGAGTGCCACCTTAAT CTGCATCCCCATAATGGGGGAAACCATAGAGAAAATGAAGATTGATGTGCAAAAAGCTAAACAAAACGGTGCTGACCTCG TTGAAATTCGCTTAGACCATTTGACCACTTTCAACCCCTCTCCTGACCTTCACACTCTCATTCAGGATCGCCTTTTGCCT GTGTTGATTACTTACAGGTGCGTGAGTGCGGATCGATCTTGTGCTCTTTCTGATAATTGATTTTATGTGATTTGGTGATG GGCATTGATTGCAATTTGATGATATTTTGTTTTTGTTTTTTAAGGCCTACATGGGAGGGTGGTAAATATGATGGTGATGA AAACAAACGGTTGGATGCACTGCGATTAGCTATGGAGTTGGGAGCTGATTACATTGACGTTGAACTTAAGGTTGTTTTGT TTTCCCCTTTTGACTTTATTAGTTGATTCACAATTCCACTTCACTAACAGCTTCATTGTAGTATAAATGGATAGGAATCT TACTCAATCAGATGAATTGGGGGAGTTTTCTTCAAAAAAATAATATAAAACAAGAAATGCCCGCGTAGATTTTGTTGCTA TGTCAATTGTTCGAAATCCAGAGCCTTAGTCTTTCCAATACAGTATTATGCTATGGCTACTGTGTAATTGTAGTTGCGTA GTTTGATAAATATGCTATCATATTCCATTCCTCATTTATTATGTTTTTAGGGTGTTTGTAGATAAGCAACCTTAATTAAG CATTTATGGTAATAAGCACTGATCACATCATCAGCTTATTTGAGAAGCTTATAAAAATAAGCTCAAAATAACCTATTTAT ATGCTAATCTGAGCAGCTTATAAAAATAAGCTCAAAACAACTTATAGATAGGTTATAAGATATTTTCATAAGCTTACCTA AACACTTGCATAAGTGCTTATGCTATAAGATAAACACAAATATGCTCTTCCAATTCCAAATGTAGCCTTAGTTTACCAGC TCGGTGCATCATGGATCAGGCTGAAGAAAATACATGTATCCCAAATCTGTCTTCTGGTTGTTTTCTCATAGGTTTTGGTT AAATTTCAGTCTGTCTGATTCTAGTGGAAATATTTGGATTTGTCATGCTAGTAGCCTAGTTGCATCCAGCATTGAGCTCT TCTATAGAAATTCAACTGCAGGTTGAATGCCTGTTATTAGTTATTACTCTCAGATATTGATACTAAATGTAGTGTCTTCA TATTGTTTGCTATGTGATGTCTGAACTCTGAAACTTAGTGTAACATTTTTGTCTCTCCCATATCTCCAAAGGTTGCTCAC GAGTTCTATGACTCTATACGTGGGAAGACATTTGAAAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCC ATCAGTTGAGGATCTTGGCAACCTTGCAGCAAGAATACAAGCAACTGGGGCAGACATAGTGAAGATTGCAACCACCGCTG TGGAGATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTAAGATGCGTATGTTGAATAAATGAAACT TGGAACAAAATTTTAACTTCATACAGTTTTTATTTGATCTCTTATAAGCTATTGAGCTTATACATTTATGAACTTAATTA TTGTATTATAAAGGTAAAAATGCTTTGAGGTTATTTAGGAACTGAATTTCAGCTCAATTGAGAAAGATAGGTCAAAATAG GGTACATATCTGAAAATAAAATGAACAACGCAACTGAAGCCCCTGTAAATTTAACCAAATGTTTGCACTTTGCCCCAACT GTTGAAAACCATACAGCAATGGTAGCAGAACTAGAAAAAACTCGTTAAGTACTCGGCCATTGTATCTAACCTATTGAATA AAATTATCCAATAGGTTTGGCTTGTATCATGATATGTTAATGCTTCAACTTTATGTGGCTAATTTCAAGTCCCGTGCCCC TTTGAACATTACTACTCTGTTTCTGATTTTTTTGACGGTAATATTTAAATTTATAATTATTAGGTTCAGGCTTTTAGCCT TTTACTGTGATACTTTATTTAAGAATAACTATATTTCAAATTCCCAGGTTCCATTTATTGGACTTGTTATGGGTGATAGG GGATTGATATCACGTGTACTTTGTGCAAAATTTGGTGGGTATCTCACTTTTGGTACCCTGGAATCAGGAGTAGTTTCAGC TCCTGGTCAACCGACACTAAAGGATCTACTGTATCTCTACAATTTCCGACAACTGGGGCCTATGACAAAGGTATACGGGA TTATTGGGAAGCCTGTCAGTCACAGTAAATCACCCATGTTGTTCAATGAAGTCTTCAAGTCAGTTGGTCTTGATGCAGTT TATGTGTATTTGTTGGTAGATGACCTTGCCAATTTTCTAAGGACTTACTCATCAACAGATTTTGCGGGATTCAGGTTCTA ACTCCTTATGTAGATTGTTTGAATTTATTTATGTGAGTGTGTGATGCTTCTTGCATGTCTGCTATGGTTACATTAGGGTA ACACACACTGCAACTGCATTCTTTTTTCATAATCACGATATTCTTGAGTTTTCTCGTGAGCTACATATAAAAATAAGCTA ACAATCTACTCATATGTCATGGCTTTTGTTATTAATTTTGTGTTTTACTAAGTGTTGAGGATTCTTACTAATTAGCAATA TTTCAAAACTTAGAAATGGTTGGTAAAGTAATTTAACTACTCAAGCATTGACTTGACAATTCCATTCAGGATTAAAATGT TGTTAGGCCATATCTAAATTCGTTTCATGTGAAGTATCATGTTAGCATACATCACTATTTTGGGTTGATCGATCTTTCTT TAATATTTCCAATTGTTTTAAATGCCCTAGGAACCCTATATATGATTCCAAGCTTTCTTCTAGTTCTATGAAAACCTTTC TATTGTTTGACTCATGAAATTATCCTTTTAGACTCTCTTATTTTTTCCTTTCTTTTATTGTTCCTTATCTCTTTTTTGTC CATGTCTCCAGTACATCACTCTATTTCTACCATTTTTCTATATTGAATAGTTAAACCTCTCACTATTTGAGTTTGATTTT AATATATGTACATATATTTCAGTGTTACCATTCCTCACAAGGAGGCAGCACTTAAGTGCTGTGATGAGGTTGATCCAGTG GCAAAGGTATAGTTGTTAACTTGCAATGTGTTACAATGTGTGTTGGGCGATCTTGGATCAGTATTCAGAAGAGTTTTTAT TCTTTTTCATTTCTTATATGAACACTTTAAATTGGTTACAAACACAGTCAATAGGAGCGGTAAATTGTGTTATAAGAAGA CCCACTGATGGAAAGTTGATTGGGTATAATACTGATTATGTTGGTTCTATTTCTGCAATCGAGGATGGACTACGAGGTAG TTGTTATATTTAGTGGCTAAGCAATTTATGATATCATTGTTGTTGGTAACTGTCTGAAAAAGATGTTGTGTGGTTCAATT ATTTCATTGCAGGTAAACATAATGTTAGTGGCGCATCTTCACCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGT GGTGCCGGGAAGGCACTAGCTTATGGTGCAAAAGAGAAAGGAGCAAGAGTTGTGATTGCAAACCGCACCTATGGTAAACT TCGTATTTTTATATCCTGCCTAAGCTAAAACATTGAATTGTGAAAGGTTCTTCCAGGATCTTGTTGCAAAACACCATGCA GGAGAATTCAACAATGTTATGAATTCTTTCAGTTCATTGTCACATGGATGCAAATTTTTTACATAAGTTTTGCATAATAA TGTCTGTAGAGGGAAAGAGCGAGAGAATTAGTTAGTTAAATATGATTGGGGAATGGCCTCTCAAGAGAGGTTTTACAGTC CAAAATTTATCTTTCATATTTATGCAATATCATTACTTATCACACAGTATTAACAGCTTATTTGTATAATATAGGGTATA ATATTGCTTGCCCCAGGAATCAGTATATTTACATTCAACATATAGCTTTTCTGACTAAAAAAATCTTAGCTTTCACTTCC CTTTATGAAACATATTTAATGATGTATTGTATGTATTATTTATATATAGATCGCGCCAGAGAACTTGCTGATGCAATTGG AGGTGATGCAATAGCCCTTGCTGATTTAGATAATTTCCACCCAGAGGATGGTATGATTCTTGCAAACACAACATCAATTG GAATGCAACCAAAAGTTGATGAAACACCTGTTTCTAAGGTATCTCCTATGCTGTGCTATACCAATAGGGCTTGTTATTGT TAGTGGATGTTTTGATTTTGATATGTTATTGACCATCATATAGTTTCCTAATGATGATTGGATTTCTGTTCAAAATCATT ACGATCATTGGTATATTAAGTGAATTTAGGCTGAGATGGTTGACAATGCCTAAATGCATCCTAACCTCGTCTTTGATTTT GACATTTTGGTGCCTCAAGTTTGTATTGTATTATTGAGATAGGTATCGTAACAATATGCCATGGTGTTTCTCTTTTTGAT GGGTGTCATTGTTAAATTAGTATGAAGGCGCAAAATCTCTTGCTATGGAACAAGAGTCAGTTGACTTCCAGAGAACCAAT CATTCCTTTGTTTTTGCAGCATGCGTTGAAATTTTACTCGCTTGTCTTTGATGCTGTCTACACACCTAAAATGACTAGAC TCTTGAAGGAAGCAGAAGAAGCAGGAGCCACTATTGTAACAGGATTGGAGATGTTTATTGGACAAGCATATGGACAGTAT GAGAATTATACTGGATTGCCTGGTAAACTGACTGTAAAATTTTTCATAACTGTTCCTTGGACTTTTGTACCCTGGTTCCC TTGTCTGTACTTTATTTCATCTGATTGGTTTTGACATCTTATTTTCTTTCTTTGATTCCATTGATACATTTGCAGCACCA AAGGAGCTCATCAGAAAAACCTTGGAAAATTAACGAGGTTTGTAAGACCTATCTTCTATCTCACTGGTCATGTTTCCCCA TGTATTTAAAATTCTGACTTTGCTTCCATTACTCCATCTGTGATTGCTTTAGAAAATGAAGTGAATGTATTTGTGTCTCC ACCATTTTTACTTTGTGTGCTGAACACGGTGAATGTTGAGTATTGACTTGTTGCAATATAATTGCACAATGTGTTCTTTA TTTTCTTATTTTTGTTATCTCTACTTCATTGAAAATGTCAACTTATTTTATGCTGGACTAGTAACAAGTCAGCTACCAAT GTGTATATATTTATTTCCTGCTCGTTCTTTTTCTTTCTTATCCTACTTTACTCTTAAAACTGTTAGGACACATTGCTTGA TGTTGGCTGCCTTTGATATACTTAACACCCATTGTCTATTATCCTTGAAAGTTGAAACATTCTCCTCTGAAGAATACTAC ACTACAGGCCTCACTTTTTTGTTCTTATTTTACATTTCTTGACTTAATAGGTTGAGGGCAATATTGCAATACTGCCTAAT ATCTTACTGTGAGAAGGTAATAGATTTGTTGGTTGCAGGGAATGATTTTTGCATTACAATCCTAGAAGAAGAATAGTGAC CGCAGCATGGCTTACTTCGATTGTTTTGGCTTTCAACGGGAAGAATTTAGGTTGTTAAACATGTAACATCAGGCAACATC TGTTAAAAAATTTGACCGGAAAAACATCATTTTAAATTTGCCTTTGCATTTTCCTCACTTCTAAATTTCCACTTTCTCAT GCAGCAAATTGTATTTATGCGGCCAGGAAGACTTCTTGGCAATCACTATTAATATTAGCAATTGAATTTCTCTCAAATCC TTTGCAGTTCCAGATTTGTAGTTCCATGATTCTATCCAACTGTTTAAAGCTGAAGATGCATCCCTTTTCCAATTAATTTT ATGGAAAAAAAGGATTAACTAAGGACTTGCGTGTGATGAGTAATTGAGTATTCATTCTTATATGGCCTTTTTACTTCAGT TACTGCCTTTGTTTCTTCTGTTCCCTTGGTTTGACATTATCATTAGGGCAGTAGTTGTGCTTGTCTGAGTTGTTTTTGCC TTTTCAATACCCAAACGTAACTTAGAAATTAATGGGTTTGCATCGGTGTGTATATTCAACGACCGCTGCTGCCCTATGCC TACGCCTGTGCAAAACGGTGAAAGCTTTTTGACAAAGAGGTGAATACTCCTTAATGCTTAGGTTCGTTAGTTGGCAGCAA CGGGGGAACACAATGCAAGTTCCATGGCAGATCCGACGCATCTTTTGGTTCATCTGCAATTTGGAACCCTAGATTTACTA TTGGGCTTTAAATATTTTCGCTTAAAATATTTAACCTCAGAACTGAGTATCTGATGTATCCATTGTACAAAATGAAAATG AAAGCAATTAGTGGATGGTTTCGGGTTGAAGGGGTTTTAGGTTTGAATGATTTATGGGTTCTCTTTTGAGGTGGATTGAA AAAGTAGAAGAATATAAATTGCAAAATGATAACACGTTATGAATATGCTTATGGTATAACATGCTATATATACACATATC TTTATCTTGTGATATGTTGCTCGTATTATGCATTATTTCTGTGAGTTAACCCTTGCACTGCCTTGTTTATCTGTTTGTGT TTGGACGGTCGGCAAACTGCAAGATGGTCAACAACTGGTTTGTGATGGTTCGCCATTCAGGGCAGGTTCGAAGCGAAATG ATTGAGCACTCCGACGAGGACTCGTACTTCATGAGTGAGAAGGATGCGGGTCGATGAGATTGGGCTGGTATATGCGTGGC TAGAGCCTACTGTTATGAGGCGCTTGATGTTTTCACTTGTAATATATTTGGAACTACTGATGCTTTCTGTAAACTTGTAA GTCTTGCCTTCTGGCCTATGTTCATGGCACTATGGGTTGTAATTAATTATGTTAAGTTTAATGCATTGCATGTTGTGAAA TGTTTACCTTGGAAAAGAAAAGAAAAAATAAAATTTACCCGCATATTTCGC
CDS sequence (LotjaGi4g1v0050500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGAGTGCCACCTTAATCTGCATCCCCATAATGGGGGAAACCATAGAGAAAATGAAGATTGATGTGCAAAAAGC TAAACAAAACGGTGCTGACCTCGTTGAAATTCGCTTAGACCATTTGACCACTTTCAACCCCTCTCCTGACCTTCACACTC TCATTCAGGATCGCCTTTTGCCTGTGTTGATTACTTACAGGCCTACATGGGAGGGTGGTAAATATGATGGTGATGAAAAC AAACGGTTGGATGCACTGCGATTAGCTATGGAGTTGGGAGCTGATTACATTGACGTTGAACTTAAGGTTGCTCACGAGTT CTATGACTCTATACGTGGGAAGACATTTGAAAAAACCAAGGTCATTGTTTCATCTCACAACTATCAGCTTACTCCATCAG TTGAGGATCTTGGCAACCTTGCAGCAAGAATACAAGCAACTGGGGCAGACATAGTGAAGATTGCAACCACCGCTGTGGAG ATCACTGATGTGGCACGCATGTTTCAAATAATGGTGCATTCTCAAGTTCCATTTATTGGACTTGTTATGGGTGATAGGGG ATTGATATCACGTGTACTTTGTGCAAAATTTGGTGGGTATCTCACTTTTGGTACCCTGGAATCAGGAGTAGTTTCAGCTC CTGGTCAACCGACACTAAAGGATCTACTGTATCTCTACAATTTCCGACAACTGGGGCCTATGACAAAGGTATACGGGATT ATTGGGAAGCCTGTCAGTCACAGTAAATCACCCATGTTGTTCAATGAAGTCTTCAAGTCAGTTGGTCTTGATGCAGTTTA TGTGTATTTGTTGGTAGATGACCTTGCCAATTTTCTAAGGACTTACTCATCAACAGATTTTGCGGGATTCAGTGTTACCA TTCCTCACAAGGAGGCAGCACTTAAGTGCTGTGATGAGGTTGATCCAGTGGCAAAGTCAATAGGAGCGGTAAATTGTGTT ATAAGAAGACCCACTGATGGAAAGTTGATTGGGTATAATACTGATTATGTTGGTTCTATTTCTGCAATCGAGGATGGACT ACGAGGTAAACATAATGTTAGTGGCGCATCTTCACCATTAGCTGGTAAGCTGTTTGTTGTTATTGGGGCTGGTGGTGCCG GGAAGGCACTAGCTTATGGTGCAAAAGAGAAAGGAGCAAGAGTTGTGATTGCAAACCGCACCTATGATCGCGCCAGAGAA CTTGCTGATGCAATTGGAGGTGATGCAATAGCCCTTGCTGATTTAGATAATTTCCACCCAGAGGATGGTATGATTCTTGC AAACACAACATCAATTGGAATGCAACCAAAAGTTGATGAAACACCTGTTTCTAAGCATGCGTTGAAATTTTACTCGCTTG TCTTTGATGCTGTCTACACACCTAAAATGACTAGACTCTTGAAGGAAGCAGAAGAAGCAGGAGCCACTATTGTAACAGGA TTGGAGATGTTTATTGGACAAGCATATGGACAGTATGAGAATTATACTGGATTGCCTGCACCAAAGGAGCTCATCAGAAA AACCTTGGAAAATTAA
Protein sequence (LotjaGi4g1v0050500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKSATLICIPIMGETIEKMKIDVQKAKQNGADLVEIRLDHLTTFNPSPDLHTLIQDRLLPVLITYRPTWEGGKYDGDEN KRLDALRLAMELGADYIDVELKVAHEFYDSIRGKTFEKTKVIVSSHNYQLTPSVEDLGNLAARIQATGADIVKIATTAVE ITDVARMFQIMVHSQVPFIGLVMGDRGLISRVLCAKFGGYLTFGTLESGVVSAPGQPTLKDLLYLYNFRQLGPMTKVYGI IGKPVSHSKSPMLFNEVFKSVGLDAVYVYLLVDDLANFLRTYSSTDFAGFSVTIPHKEAALKCCDEVDPVAKSIGAVNCV IRRPTDGKLIGYNTDYVGSISAIEDGLRGKHNVSGASSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYDRARE LADAIGGDAIALADLDNFHPEDGMILANTTSIGMQPKVDETPVSKHALKFYSLVFDAVYTPKMTRLLKEAEEAGATIVTG LEMFIGQAYGQYENYTGLPAPKELIRKTLEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 234 | 233 | 2.0E-75 | ||
| PANTHER | 2 | 509 | 508 | 2.4E-270 | – | |
| PANTHER | 2 | 509 | 508 | 2.4E-270 | – | |
| SUPERFAMILY | 3 | 228 | 226 | 2.09E-63 | – | |
| Hamap | 7 | 229 | 223 | 31.463 | ||
| CDD | 7 | 228 | 222 | 8.37449E-62 | ||
| TIGRFAM | 8 | 224 | 217 | 1.0E-65 | ||
| Pfam | 9 | 226 | 218 | 7.7E-67 | ||
| SUPERFAMILY | 227 | 334 | 108 | 1.9E-32 | – | |
| Hamap | 235 | 511 | 277 | 29.981 | ||
| Gene3D | 235 | 332 | 98 | 7.2E-38 | – | |
| TIGRFAM | 236 | 506 | 271 | 1.1E-61 | ||
| Pfam | 240 | 320 | 81 | 2.3E-26 | ||
| Gene3D | 333 | 511 | 179 | 2.1E-55 | – | |
| CDD | 334 | 497 | 164 | 1.69925E-32 | – | |
| SUPERFAMILY | 358 | 510 | 153 | 5.65E-35 | ||
| Pfam | 360 | 429 | 70 | 2.8E-8 | ||
| Pfam | 480 | 510 | 31 | 7.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | 3-dehydroquinate dehydratase activity | Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O. | ||
| Molecular function | Shikimate 3-dehydrogenase (NADP+) activity | Catalysis of the reaction: shikimate + NADP+ = 3-dehydroshikimate + NADPH + H+. | ||
| Biological process | Shikimate metabolic process | The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids. | ||
| Molecular function | NADP binding | Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0050500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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