Domain Predictions — View

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PF01488

Source: Pfam

Description

Shikimate / quinate 5-dehydrogenase

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0090049.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase [Medicago truncatula] gi\|357466815\|ref\|XP_003603692.1\|	Domains Coil G3DSA:3.40.50.720 IPR006151 IPR015896 IPR016040 PF00745 PF01488 PTHR13812 PTHR13812:SF20 SSF51735 SSF69075	11
Lj0g3v0090059.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase [Medicago truncatula] gi\|357466815\|ref\|XP_003603692.1\|	Domains Coil G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR016040 IPR018214 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR13812 PTHR13812:SF20 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	21
Lj2g3v2161690.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Glycine max] gi\|356552995\|ref\|XP_003544844.1\|	Domains Coil G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR016040 IPR018214 MF_00087 PF00745 PF01488 PF05201 PS00747 PTHR13812 PTHR13812:SF20 SSF51735 SSF69075 SSF69742 SignalP-TM_GRAM_POSITIVE TIGR01035 cd05213	21
Lj4g3v0409480.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: glutamyl-tRNA reductase 2, chloroplastic-like [Cicer arietinum] gi\|502142275\|ref\|XP_004504877.1\|	Domains Coil G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR016040 IPR018214 MF_00087 NON_CYTOPLASMIC_DOMAIN PF00745 PF01488 PF05201 PS00747 PTHR13812 PTHR13812:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	25
Lj4g3v0448950.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1 [Cicer arietinum] gi\|502079645\|ref\|XP_004486324.1\|	Domains G3DSA:3.20.20.70 G3DSA:3.40.192.10 G3DSA:3.40.50.720 IPR001381 IPR006151 IPR011342 IPR013708 IPR013785 IPR016040 IPR022893 MF_00214 MF_00222 PF01487 PF01488 PF08501 PTHR21089 PTHR21089:SF12 SSF51569 SSF51735 SSF53223 TIGR00507 TIGR01093 cd00502 cd01065	24
LotjaGi1g1v0132500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A151U075\|A0A151U075_CAJCA Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0132500	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 SignalP-TM TIGR01035 cd05213	24
LotjaGi1g1v0132500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A151U075\|A0A151U075_CAJCA Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0132500	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 SignalP-TM TIGR01035 cd05213	24
LotjaGi1g1v0132500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A151U075\|A0A151U075_CAJCA Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0132500	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 SignalP-TM TIGR01035 cd05213	24
LotjaGi1g1v0132500.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A151U075\|A0A151U075_CAJCA Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0132500	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	24
LotjaGi1g1v0132500.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A151U075\|A0A151U075_CAJCA Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0132500	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	24
LotjaGi1g1v0414000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A1J7IEK7\|A0A1J7IEK7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0414000	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	23
LotjaGi1g1v0414000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|G7J442\|G7J442_MEDTR Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0414000	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	24
LotjaGi1g1v0414000.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|G7J442\|G7J442_MEDTR Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0414000	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	24
LotjaGi1g1v0414000.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|G7J442\|G7J442_MEDTR Glutamyl-tRNA reductase; Found in the gene: LotjaGi1g1v0414000	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 PF00745 PF01488 PF05201 PIRSF000445 PS00747 PTHR43120 PTHR43120:SF5 SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	24
LotjaGi4g1v0042400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Glutamyl-tRNA reductase; TAIR: AT1G58290.1 Glutamyl-tRNA reductase family protein; Swiss-Prot: sp\|P93111\|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic; TrEMBL-Plants: tr\|A0A0B2SN36\|A0A0B2SN36_GLYSO Glutamyl-tRNA reductase; Found in the gene: LotjaGi4g1v0042400	Domains Coil G3DSA:3.30.460.30 G3DSA:3.40.50.720 IPR000343 IPR006151 IPR015895 IPR015896 IPR018214 IPR036291 IPR036343 IPR036453 MF_00087 NON_CYTOPLASMIC_DOMAIN PF00745 PF01488 PF05201 PS00747 PTHR43120 PTHR43120:SF4 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF51735 SSF69075 SSF69742 TIGR01035 cd05213	28
LotjaGi4g1v0050500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Shikimate dehydrogenase (NADP(+)); TAIR: AT3G06350.1 dehydroquinate dehydratase, putative / shikimate dehydrogenase; Swiss-Prot: sp\|Q9SQT8\|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; TrEMBL-Plants: tr\|A0A0S3T202\|A0A0S3T202_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0050500	Domains G3DSA:3.20.20.70 G3DSA:3.40.50.10860 G3DSA:3.40.50.720 IPR001381 IPR006151 IPR011342 IPR013708 IPR013785 IPR022893 IPR036291 IPR041121 MF_00214 MF_00222 PF01487 PF01488 PF08501 PF18317 PTHR21089 PTHR21089:SF12 SSF51569 SSF51735 SSF53223 TIGR00507 TIGR01093 cd00502 cd01065	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd01065	CDD	1	6.25