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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0052600 |
| Transcript ID | LotjaGi4g1v0052600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT1G61110.1 NAC domain containing protein 25; Swiss-Prot: sp|Q8GY42|NAC25_ARATH NAC transcription factor 25; TrEMBL-Plants: tr|A0A0L9TLQ4|A0A0L9TLQ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6353325..6356311) extracted from Lotus japonicus Gifu genome v1.2.
CAACCTCCCATTCCTCATTATGCTCGTTTCTTGGTCCCCACAGCCACGTGTCACACGATCTCATCCTTCATTTCCCATGT GTCACATTATAACATCTTCATCCGTTCGGTACCTTTACCTGAATTCTCAACTCATGCATTATACACATATCATGAAACCT TTCCATTTAGCTATTTTGATTGAAAGCCTTACCATATCTTCTTGTTGCCACTAGTTTCACAAATTCGAAGAAAACAAATA AGAGAGAAGAAAAGGGAAAAGAAGGAAAAGCAAAAGAAAGAAAAATAAAAAGCTTCTCATCTCATCATCATATCATATTC ATATCAACAACAAAAAGTTGTGTACTAGAACATGCATGAGATATATATAGCAAATTGAACAAAGTTTCATCATCATTGAT CATGGACTGCACAGAGTCATCATCATCACGCTCTCACTATCCACAGCTCCCTCCCGGGTTTCGGTTCCACCCCACCGATG AAGAACTCGTCGTTCACTACCTCAAGAGTAAAGTTGCATCTATGCCCCTTCCTGTTGCCATCATCGCCGAAGTTGATCTC TACAAGTTCGACCCATGGGAACTCCCAAGTATGCAACTTTATCACACACCAAGATTTTAAATTGTGATAGCGGTTTCTAC AACGGTCACGGTTGCGTTACAATCTCTTGCATTTTGCGAAAAATTGTGAATAAATGTGGTTGTTGTGGCAATAATCACGG TTATATATATTATTGTGCTTTCAAATTATTTTTGTTTTGGGTTTTGTAGGTAAGGCCGTGTTTGGCCAACAAGAGTGGTA CTTTTTCAGCCCGAGGGATCGGAAGTATCCAAATGGGGCGAGGCCAAACAGGGCTGCAACTTCTGGGTATTGGAAAGCAA CTGGAACTGACAAGCCTATACTATCATCTGATGGGCACCAGAAAGTTGGAGTGAAGAAAGCACTTGTTTTTTATGGTGGG AAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTTGTTGATAAGTCTTTTGGTCCTAGCTTTAG AACTACAACTACTCATCCTCCAGTGCCTGCTCATCCTTCAAACTGCAACAAGAAGAATTCCCTGAGAGTATGTATACATG CATGCCATGGTATATATTGGTTTCCATGCATTGAGGCACAATACACTTCCTTTTTCATTTTAGTTTCTCTTCATATTCTT TCCCTATTACATTATTCATTATATCATTCATTTCTCTCTATTTTTCTTTCTATAGATATATTAGTGTATTTCAGGTGTTC AAGCAAATTGAAATCTTCTGGCTCTGTTTGATGAGTCTTATATGCAATTGTACCAAAAAAATTTGTGTCATGACAGTTAT AAATTTACATCATGATTTTTAACTACTATGGCATGATTTTCTTGGTAGGAGGGGATACAAGATAACAAACAAGGATAGAT GTATCAGCATGAACTTTTAAGTTTAATAAATTAATTTTTTTAAAATTAATCTTAACCATTGATGACAGATCAGTGATTAT GATTGTGCACCAGAGATAAGTAGACAAGTCATGTTATAGAGGATCCAATTTGGGAAATATGATGTTAATGCGTGCATGGA TTGAAATGGTTTTAAATGGTGTTGAAATTGTGAAAAATTAATTGCAAATGTTAATGCTTATGATTGCAACCATTGCAAGT AATTGAAAAAATTAGATGTTTAAAACCATATGTGTATGTCTCAAATTTTTTAACAGAAAAAGTGATTGAAATTATGTGAG AAGAGGTAGAGGATATAAGGGTTTGGGAGGGTGAAGGGTAAGGTTAAAACTCTAAGGAGGACTAACTTAATAACATTACT AACAACTAACATTTGTCTAAAAAAAAAAGGGAGAAGATTCCTAATAGTTTTTAACTGTCACAAATTACATATTTTTTAAT TTCAATATAGGACCGTTGAAAACGGTTACAAAATGTGGCAGAGTTCATAGCTGTTCACCGAATATTATAGAATTTATTAT TAAAGTAGTTTAAATAGTTATTTTTTTCTTTATTGTTTATGGTTTTGTAGCTTGACGATTGGGTTTTGTGCCGAATATAC AAGAAAAGCAATGGTACCACCACCATGCCAAGGCCACCACTAATGGAGAATGACAAGGAGCTTAATTCATTGGAGACCAT GGTACCAACAATGTCAACTTTATCAATGCTAAACACGAACCAAAACACCACACCTCCATCGTCGAGAACTTATGAACCAG AAGGACTAGTTGAAAACCATGACAACTTCTTCCATGGATACTTAACACCTGATCAGAGCATGCAAAATGGTAACAATAAT GATACCAATGATGATAATAGCTTCTGCGTGAAGCGCGCAATAGCACCATCGCAGTTTTTGAACGAGTCGGGGTCTGCGGG GTCATCTTTTTCGACCAAGCGATTCCATGGTGATCTTAATAGTGGAAGCAGCAATACTGAGGAAAACAACAACAATTCAT TTGTTTCCCTGCTTAGCCAACTCCCTCAGAGTGCATCGTTTCATGCAAACGCGATTCTTGAGTCTGTTGAGGATGGTGTG ATGAGGCAACAATTTCAACTTCCCAACATAAATTGGAACTAGTTAATAATATACTAGTGCTATCTTGGCTTAGTTTTTAC ACACACCCTCTAAAAATTGAAAATGTAACTACCATTATAGGTCTCTTGGGGTTGGTCTTAGTTAGTATTTTTTATTTGAC ATGTAACAACAATATAATATACAGAAAAAAGGAAGAGATCGTGACCATATATAGACCTAAATTTAATTTGAAGTTGAACC TTAAAATGAAGCACTAGATTAAATTGGATATAATCGGATCGATGATCAAAATCTTATATGGGACAAAATGTTAGAGGGAA GGAGGAGCAGATATTTCCATGACATTGGGTTGATTTGAAAGACTTTATTCAAGCCCAACTTTTGGGATGTAAAGGGAAAG AAAGAGTGTGATAGAAAATGAAATAAG
CDS sequence (LotjaGi4g1v0052600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGCACAGAGTCATCATCATCACGCTCTCACTATCCACAGCTCCCTCCCGGGTTTCGGTTCCACCCCACCGATGA AGAACTCGTCGTTCACTACCTCAAGAGTAAAGTTGCATCTATGCCCCTTCCTGTTGCCATCATCGCCGAAGTTGATCTCT ACAAGTTCGACCCATGGGAACTCCCAAGTAAGGCCGTGTTTGGCCAACAAGAGTGGTACTTTTTCAGCCCGAGGGATCGG AAGTATCCAAATGGGGCGAGGCCAAACAGGGCTGCAACTTCTGGGTATTGGAAAGCAACTGGAACTGACAAGCCTATACT ATCATCTGATGGGCACCAGAAAGTTGGAGTGAAGAAAGCACTTGTTTTTTATGGTGGGAAGCCTCCAAAAGGGGTTAAAA CCAATTGGATTATGCATGAGTATAGGCTTGTTGATAAGTCTTTTGGTCCTAGCTTTAGAACTACAACTACTCATCCTCCA GTGCCTGCTCATCCTTCAAACTGCAACAAGAAGAATTCCCTGAGACTTGACGATTGGGTTTTGTGCCGAATATACAAGAA AAGCAATGGTACCACCACCATGCCAAGGCCACCACTAATGGAGAATGACAAGGAGCTTAATTCATTGGAGACCATGGTAC CAACAATGTCAACTTTATCAATGCTAAACACGAACCAAAACACCACACCTCCATCGTCGAGAACTTATGAACCAGAAGGA CTAGTTGAAAACCATGACAACTTCTTCCATGGATACTTAACACCTGATCAGAGCATGCAAAATGGTAACAATAATGATAC CAATGATGATAATAGCTTCTGCGTGAAGCGCGCAATAGCACCATCGCAGTTTTTGAACGAGTCGGGGTCTGCGGGGTCAT CTTTTTCGACCAAGCGATTCCATGGTGATCTTAATAGTGGAAGCAGCAATACTGAGGAAAACAACAACAATTCATTTGTT TCCCTGCTTAGCCAACTCCCTCAGAGTGCATCGTTTCATGCAAACGCGATTCTTGAGTCTGTTGAGGATGGTGTGATGAG GCAACAATTTCAACTTCCCAACATAAATTGGAACTAG
Protein sequence (LotjaGi4g1v0052600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCTESSSSRSHYPQLPPGFRFHPTDEELVVHYLKSKVASMPLPVAIIAEVDLYKFDPWELPSKAVFGQQEWYFFSPRDR KYPNGARPNRAATSGYWKATGTDKPILSSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVDKSFGPSFRTTTTHPP VPAHPSNCNKKNSLRLDDWVLCRIYKKSNGTTTMPRPPLMENDKELNSLETMVPTMSTLSMLNTNQNTTPPSSRTYEPEG LVENHDNFFHGYLTPDQSMQNGNNNDTNDDNSFCVKRAIAPSQFLNESGSAGSSFSTKRFHGDLNSGSSNTEENNNNSFV SLLSQLPQSASFHANAILESVEDGVMRQQFQLPNINWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 354 | 354 | 5.9E-135 | – | |
| PANTHER | 1 | 354 | 354 | 5.9E-135 | – | |
| SUPERFAMILY | 11 | 187 | 177 | 1.7E-63 | ||
| ProSiteProfiles | 16 | 187 | 172 | 60.737 | ||
| Pfam | 17 | 143 | 127 | 1.2E-39 | ||
| Gene3D | 25 | 192 | 168 | 1.7E-64 | ||
| MobiDBLite | 246 | 272 | 27 | - | – | |
| MobiDBLite | 251 | 272 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0052600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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