Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0052900 |
| Transcript ID | LotjaGi4g1v0052900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein; TAIR: AT1G61080.2 Hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980; TrEMBL-Plants: tr|K7L2N7|K7L2N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6388889..6393738) extracted from Lotus japonicus Gifu genome v1.2.
TATCAACCTCCTTGCATGAGGTACGCCATTGATGACGAAGATATAGAGCATAAACACTAAACCATACCCGAAAACAACTC AATCTAATCCACAAGATTGGAGGAGGAAGGTGCCTTTATAACCCTTCCTCTTTCAATTTTCTTCCTTGGCTCTCTCTTTT GAGAAAGTTCCATTTCAATTCTCCCATCATTGGTTTCGGCATCGACATTAGGACAAACCCCTAAACGCATTCATTCATGC ATGCCTCAGATTTTTCTATTTCCAACCCAATTTTAATTGTATTTATTTACCAAAGGTTTGAACATTTCTCTTGTTAATGC TACCTCCATGGAATCAATTTCAATTTCAATTTCTTTTTGTTTTCTCCTCAAATCCAATGTTTTTGAAATGAGTTTATGTG TTTTTGAACGTCATGGTTAGCATGATCACCGCCATTTTTTTTGCAGAATTTCTAGTCGATATAAGCAATAAAAGATGGCT ACCGCGGTGTTCTGCGGTTTAAAGCCGCTGCTATTTCGTGGCAAGATGAGCATTCTTGAGGTAAATTCAAGCTTTTTTTG TTGTTTCTATGAACTTTTTTCTATTAGCCCAATTAAACCCATTGCTCTTTCATCTCCCAATTCTCCTTGCACTTTCGCTT GACATCCTTCATTCCCGTTGTTTCTCACCACTCTCAACCGTCAACATTGTCGTCTAACACGCTTTGTCACTGTTGTCCCT GTCTAAGACCTTCCACGACAATGGGTGGAGAAAGTTAGGTGGTGGTGGATATGTATATAGATGGTGCCTAGTAGTGGACG AATAAGGTGTCAGGAGAGTATCGAGTGACGGTGAAAGGTATACCACATCGTAGCAACGATGGTGGTGGAAGGTGAATGCA ACAATGGAGCGTGTCACAACAATGGTGATGACCGTGGTAGAAAGTACCTAGTAGCATTAAGAAATTTTTGAAACTAGAAA TTACAAAAATTGAAATTTGATATTATATTGGAAGGTAGTTTAACTTTTTAGCTGCATGTAACCATTAAAAGACAGAGTTT CAGCATCAGTTGTTTGGAACACTACATAGATTTTCCAGGCACCCTTCTTAATGTATAACTTCAACCACTTGCAGGGATTG AAAGGCTCGCCTAAGAAGTCTAGCACACCTAAGAAGTGTAGCTCGCCGAAGAAGTCTAGCACACCTAAGAAGTCTAGCAC GCCTAAGAAGTCTTCAAGATCTCAGAGCAAGGGAAATGGAGAGTCATTGGAGTTGTCATTTGTAGGAGCAGACCAATTGA TCTTAATGGTGGAGATTCATAAGAAGATCTTAGCATTCAGGGACATCATGGACCTAGCTCCATGTAACAGCTCTGCTTCC TTACGTGAGGTAGAAAAAAAAATATCCTCTTGAGATCAAAGATTGCATTCACTCATTATTCTTGTCTTCTTTATTAATTT ATCTTTCATTTGACATATCATAGATGGTTATGAGAACCCTGCAAGATCTGCATAAGCTCTACCCAGGGGTTGTAACAAAA TTACAAGTCTCAAGGATTATGGACAAGCCTATAGATCAGGTTTCAATAGCTAACTGCAAATGAAATTGTCCTCATTGTAA TACTGCTAAAATATTAGCTTCCCAAAATACTAAAAGCAGACAATTTTTTGCACCAGGTTATGGCCTACTTCTGTGAGGCT TTGAAGTCTCTTGGAGAGTCATGGATAATGGATACTGATGGAATGGACAAGCTCAACATTGTATTACCATCATGCAAGGA TAAAGGCAACATGAGTCAATTGGGTATGCTATCTATAATTTTATCATCTTGTCAAATGGTTTATCAGATAAAATAATGGA CTAAATAGTGTCTTTGGTCCTTAAAAGAAATAGTGTTGGTTGGTTATTTTCATCCCTTACAAGGCAAATAGGAAATTTAG TCATTCTAAGGACTAAAATGGATCACCTTTTTCACCTTTCGAGGATTCTATTGATCATATCTTTCATCTTTCAAGGACTC AATTGAAGGTTTTTCATCTTTTAGATGATAATATTTTGTCTATTATCATCGATTTTATTGAAGTTTCTCTATTTCTTTTG CAGGTGAAACTATGCTGGCCCTTCTTGATTGTTTGATGAAGGTGGCATATGAGAGGTTTGATATCATCCCGGAAGAAGAT GAGCAAAAGAAAGAGTTCAGCCCAAGGTCAAGTAGTCCATTTGAGAAATTCATAATGAGATCCTCTTCCTTTTCAGATAG CACCAGCACCTTCAGCACCTTCTCTGGAAGCTCTTCTCCTGTGACACCAAAATCAGTACTTCCAGAAATAATCAAGTACT CTTCAAAATCTGGAGATAGTCCCAGAAGTTCTTGCACCTCACCACTTCTCTTGACTCTCAGGGTTCAAGCTGTTGGAAAG CTTAACCCAATTGATCTTAAGCGCTTGTCTTTCCAGATGACACCAACACGAATTCACAAGATAGAAGAGGAACCAGCCAA GGAAGTTGAACTGGGAGAAAAGGTAGCAAGTCCTAAAAGGGACACATCAGAAGATCTTGTGTTTGATCAGAGCCCAACTG AGGAATCAGATAGCACAAGTGATGATCACAAAAAATCAGATAAAGCTCAAGATGTGGAGCTACCACAATGTACCAAAGCA GCAGAAACACCTTCTCTCATGCACCAAGAACCATTACCTTCACTTGCAACTCCACCTCCTCCTCCTCCTCCCCCACCTTC TATGATGGTGATAAAGCCAAAAACTATGCTACCACCACCCCCGCCACCACCACCCATGAAGGTAATGCAAAAGACTAAGT CACAAGTACCCCCACCACCCCCACCACCTCCCACCCCATCCATGATAATGTCAAAGACAAAAACATCACCACCACCTCTG CCACCACATTTACCTCCGCCTCCCCCACCACCAGCACCGAAATTGCAGCAAAGTGATGCAGCAGTTAAGGCGCCTCCGCC TCCACCTGTGCCTTCAACTTCAGGTTCAAAAACAACAGCTGCTGCTACAGCTCCACCACCTCCACCACCACCTATGAAAG GTGGATCAGTTCCAGCACCTCCACCACCAATGCTATTAGGAAAGGGCGGTGCCCCACCACCACCTCCACCTGGAGCAGGG AGATCCTTGCGTGCAAAGTCAACTACTAAGTTGAAAAGATCAACACAAATAGGCAATCTATATAGAACTCTTAAGGGAAA AGTGGAAGGATCAAATTCAAACCTGAATGGCAAATCATCTGCTGGTAAAAAGGGTGGAGTTGGAGGAGGAAATGCTGGAG GAAAAGGAATGGCTGATGCTCTAGCAGAGATGACAAAAAGGTATGCTTTTTAAACCATCCACTACACCATAATCTTCCAA GGAGATCTTATACTTTGTTAACTTTATTAAGCCTTGGAAGTTGGAACCAAATGTGTCACTGATTTTCTTTTCTTTCTCCT GTTTTGTATTTTCCTTACTTTTTGTTAGATCCTCTTACTTCCAGCAAATAGAAGAAGATGTTCAAAAGTACACAAAACAA ATCATAGAGCTTAGGCCTAAAATTTCCAATTTCAAGACAAGTGACATGACAGAGTTGATCAAGTTTCACAGAGATGTTGA ATCCATTCTTGAGAATCTAACAGATGAATCACAGGTTAGTTTAGAAAACTCATGTCTCTTTGATTTACAAAGCCATTCAT TACAGTTGGTTCTTTCTTTCATTTACCATGGTAAGAAATTATGTTGTTGCACAGGTGCTATCACGGTTTGAAGATTTCCC CACGAAGAAATTGGAAGCTGTAAGAATGGCTGCAGCACTATTCAATAAGTTGAATTCAATTCTTACTGAGCTTCAAAATT GGAAAGTAGTGACTCCCTTGGGTCAGCTCCTGGACAATGTTGAACGTTATTTCACCAAGGTAATACAAAACCATCATCTT TATTCAACTTTGTGTCATTATACTATAATTTCTAACATCAAATAGCAACGTGCAGATCAAAACAGAATTAGATGCTTTGG AACGAACCAAAGATGAAGAATCTAAGAAATTCAAGGGTCAAAACATCCAATTTGACTTCCACATTCTTGTAAAGATCAAG GAAGCAATTGTGGATGTTTCCTCAAACTGCATGGAGTTGGTGCTTAAGGTATCCAAGTTATAGAACAATGTGAAACTATA AAACTACGTTTCACCATACCATGACCGACCGACATTCTTACCGTCAGGAAATCATGCATCCATCCAGTAAAGTCAGGGGT CCTGACTCCTGATAGCATGATTTCCTGACTGCAGTGTATCTAAATACAAAGGAAACTAACATTATTTTCCTTAAACTTAA TGCAGGAGAATCGCGAGGGTGTTGCCAAGAGTGATGGACAAAAGAAGGTATCTGGTAAATTGCTTTGGAGGGCATTCCAA TTTGCATTCCGGGTTTACACTTTTGCCGGTGGACATGATGATCGTGCTGACAATCTAACAAGAGAATTGGCTAAGGAAAT AGAAAGTGACCCGAACCATCCATGATATATATACACTTGATTTGTATTATGTATATGGGGAGTGTGAAAATTAACATGGT GAGGTTCTTTCAGGATACCCATCATGAGTCCCTTTTTTTCTTTTTAGTTTCAAAGCCATTTGTGCATAGTAAATGATTGT TGGCGATTGGGAGATATAATTTTGATAGGAGCTAGTCATGTTTGGAGAGTTTTGAAAATTAACTGCGACCGAAAGTATGA AGCTAAACATGAAGCTTCACCACTGTAGTTTGTCCTATATGTATATTTTATAGTGTGTCCCATATGTATATTTTATACAC ATTAAATATATTGGAGTTTTATAGTAATGGATTCCCCTTTGTTGTTTTGG
CDS sequence (LotjaGi4g1v0052900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCGCGGTGTTCTGCGGTTTAAAGCCGCTGCTATTTCGTGGCAAGATGAGCATTCTTGAGGGATTGAAAGGCTC GCCTAAGAAGTCTAGCACACCTAAGAAGTGTAGCTCGCCGAAGAAGTCTAGCACACCTAAGAAGTCTAGCACGCCTAAGA AGTCTTCAAGATCTCAGAGCAAGGGAAATGGAGAGTCATTGGAGTTGTCATTTGTAGGAGCAGACCAATTGATCTTAATG GTGGAGATTCATAAGAAGATCTTAGCATTCAGGGACATCATGGACCTAGCTCCATGTAACAGCTCTGCTTCCTTACGTGA GATGGTTATGAGAACCCTGCAAGATCTGCATAAGCTCTACCCAGGGGTTGTAACAAAATTACAAGTCTCAAGGATTATGG ACAAGCCTATAGATCAGGTTATGGCCTACTTCTGTGAGGCTTTGAAGTCTCTTGGAGAGTCATGGATAATGGATACTGAT GGAATGGACAAGCTCAACATTGTATTACCATCATGCAAGGATAAAGGCAACATGAGTCAATTGGGTGAAACTATGCTGGC CCTTCTTGATTGTTTGATGAAGGTGGCATATGAGAGGTTTGATATCATCCCGGAAGAAGATGAGCAAAAGAAAGAGTTCA GCCCAAGGTCAAGTAGTCCATTTGAGAAATTCATAATGAGATCCTCTTCCTTTTCAGATAGCACCAGCACCTTCAGCACC TTCTCTGGAAGCTCTTCTCCTGTGACACCAAAATCAGTACTTCCAGAAATAATCAAGTACTCTTCAAAATCTGGAGATAG TCCCAGAAGTTCTTGCACCTCACCACTTCTCTTGACTCTCAGGGTTCAAGCTGTTGGAAAGCTTAACCCAATTGATCTTA AGCGCTTGTCTTTCCAGATGACACCAACACGAATTCACAAGATAGAAGAGGAACCAGCCAAGGAAGTTGAACTGGGAGAA AAGGTAGCAAGTCCTAAAAGGGACACATCAGAAGATCTTGTGTTTGATCAGAGCCCAACTGAGGAATCAGATAGCACAAG TGATGATCACAAAAAATCAGATAAAGCTCAAGATGTGGAGCTACCACAATGTACCAAAGCAGCAGAAACACCTTCTCTCA TGCACCAAGAACCATTACCTTCACTTGCAACTCCACCTCCTCCTCCTCCTCCCCCACCTTCTATGATGGTGATAAAGCCA AAAACTATGCTACCACCACCCCCGCCACCACCACCCATGAAGGTAATGCAAAAGACTAAGTCACAAGTACCCCCACCACC CCCACCACCTCCCACCCCATCCATGATAATGTCAAAGACAAAAACATCACCACCACCTCTGCCACCACATTTACCTCCGC CTCCCCCACCACCAGCACCGAAATTGCAGCAAAGTGATGCAGCAGTTAAGGCGCCTCCGCCTCCACCTGTGCCTTCAACT TCAGGTTCAAAAACAACAGCTGCTGCTACAGCTCCACCACCTCCACCACCACCTATGAAAGGTGGATCAGTTCCAGCACC TCCACCACCAATGCTATTAGGAAAGGGCGGTGCCCCACCACCACCTCCACCTGGAGCAGGGAGATCCTTGCGTGCAAAGT CAACTACTAAGTTGAAAAGATCAACACAAATAGGCAATCTATATAGAACTCTTAAGGGAAAAGTGGAAGGATCAAATTCA AACCTGAATGGCAAATCATCTGCTGGTAAAAAGGGTGGAGTTGGAGGAGGAAATGCTGGAGGAAAAGGAATGGCTGATGC TCTAGCAGAGATGACAAAAAGATCCTCTTACTTCCAGCAAATAGAAGAAGATGTTCAAAAGTACACAAAACAAATCATAG AGCTTAGGCCTAAAATTTCCAATTTCAAGACAAGTGACATGACAGAGTTGATCAAGTTTCACAGAGATGTTGAATCCATT CTTGAGAATCTAACAGATGAATCACAGGTGCTATCACGGTTTGAAGATTTCCCCACGAAGAAATTGGAAGCTGTAAGAAT GGCTGCAGCACTATTCAATAAGTTGAATTCAATTCTTACTGAGCTTCAAAATTGGAAAGTAGTGACTCCCTTGGGTCAGC TCCTGGACAATGTTGAACGTTATTTCACCAAGATCAAAACAGAATTAGATGCTTTGGAACGAACCAAAGATGAAGAATCT AAGAAATTCAAGGGTCAAAACATCCAATTTGACTTCCACATTCTTGTAAAGATCAAGGAAGCAATTGTGGATGTTTCCTC AAACTGCATGGAGTTGGTGCTTAAGGAGAATCGCGAGGGTGTTGCCAAGAGTGATGGACAAAAGAAGGTATCTGGTAAAT TGCTTTGGAGGGCATTCCAATTTGCATTCCGGGTTTACACTTTTGCCGGTGGACATGATGATCGTGCTGACAATCTAACA AGAGAATTGGCTAAGGAAATAGAAAGTGACCCGAACCATCCATGA
Protein sequence (LotjaGi4g1v0052900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAVFCGLKPLLFRGKMSILEGLKGSPKKSSTPKKCSSPKKSSTPKKSSTPKKSSRSQSKGNGESLELSFVGADQLILM VEIHKKILAFRDIMDLAPCNSSASLREMVMRTLQDLHKLYPGVVTKLQVSRIMDKPIDQVMAYFCEALKSLGESWIMDTD GMDKLNIVLPSCKDKGNMSQLGETMLALLDCLMKVAYERFDIIPEEDEQKKEFSPRSSSPFEKFIMRSSSFSDSTSTFST FSGSSSPVTPKSVLPEIIKYSSKSGDSPRSSCTSPLLLTLRVQAVGKLNPIDLKRLSFQMTPTRIHKIEEEPAKEVELGE KVASPKRDTSEDLVFDQSPTEESDSTSDDHKKSDKAQDVELPQCTKAAETPSLMHQEPLPSLATPPPPPPPPPSMMVIKP KTMLPPPPPPPPMKVMQKTKSQVPPPPPPPPTPSMIMSKTKTSPPPLPPHLPPPPPPPAPKLQQSDAAVKAPPPPPVPST SGSKTTAAATAPPPPPPPMKGGSVPAPPPPMLLGKGGAPPPPPPGAGRSLRAKSTTKLKRSTQIGNLYRTLKGKVEGSNS NLNGKSSAGKKGGVGGGNAGGKGMADALAEMTKRSSYFQQIEEDVQKYTKQIIELRPKISNFKTSDMTELIKFHRDVESI LENLTDESQVLSRFEDFPTKKLEAVRMAAALFNKLNSILTELQNWKVVTPLGQLLDNVERYFTKIKTELDALERTKDEES KKFKGQNIQFDFHILVKIKEAIVDVSSNCMELVLKENREGVAKSDGQKKVSGKLLWRAFQFAFRVYTFAGGHDDRADNLT RELAKEIESDPNHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 449 | 443 | 0.0 | ||
| PANTHER | 7 | 449 | 443 | 0.0 | – | |
| MobiDBLite | 24 | 64 | 41 | - | – | |
| MobiDBLite | 31 | 64 | 34 | - | – | |
| MobiDBLite | 309 | 334 | 26 | - | – | |
| MobiDBLite | 309 | 577 | 269 | - | – | |
| MobiDBLite | 343 | 359 | 17 | - | – | |
| MobiDBLite | 380 | 435 | 56 | - | – | |
| PANTHER | 405 | 812 | 408 | 0.0 | – | |
| PANTHER | 405 | 812 | 408 | 0.0 | ||
| MobiDBLite | 442 | 462 | 21 | - | – | |
| MobiDBLite | 489 | 527 | 39 | - | – | |
| MobiDBLite | 536 | 567 | 32 | - | – | |
| SUPERFAMILY | 683 | 737 | 55 | 2.28E-5 | – | |
| Coils | 695 | 722 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0052900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…