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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0055800 |
| Transcript ID | LotjaGi4g1v0055800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA ligase-like protein; TAIR: AT2G33793.1 DNA ligase-like protein; Swiss-Prot: sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1; TrEMBL-Plants: tr|A0A1J7I6J1|A0A1J7I6J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6724614..6729456) extracted from Lotus japonicus Gifu genome v1.2.
CGCGCGCGAAGTAAACATTCATCAACACGCTTCTTGTGTGAGTGAGAGTGTGAGTGTGAGCTTCTCTCTCGTTACTCAGA TCAAGCCAATTCGCCATGTCTGCAACCAAAACCGTATCGAGGAAGCGAGAATCCGAACAACTCGATCGCGCCAAATCTGA CAAGAAGAACCGATCAAACGCCGCACACAATCTCGATCTCGATCTCGATTTCGATCTCTCCGAGTTCGTCTTCCTCATTC ATTCATTTCTAGCTTGCTAACCTTTTCTTGATTCTTCTTGTTGTTTTCTTTTGCTTTGAATCGTAAATCGAAGTTGAAAT CACACAATGTGAATCTACTTTGCTCTGTATGCAGTGATCTCAAGGGAATCGTGTCGGCGTTGAATTTGATCAGAGATAAG GCTCAGAAGGATGGTCAGAAGAAAAACGAAGAGACGATTTCTAGGTAAACATGTCTGAAACGTTCATTTTAGTTGCGAGA TCTGGATTTTGATTTTGATTTTCAACCGTTTGTTATCTCTGTTTCCATTTTCGATCTGCTTTGAGATATCAGGTATTGAT TGCGTTTGAATTTCGATCAACGATTGTTTTTCTGTTTTTTGAAAATTGTACGTGGAGATATTTGAATGTGGAAGAAGCTT CGAGCGATGTAGATTTTGAATCTGAATCGATTCACGTTTGTTATCTCTGTTTCCGTGATTCAAACCAGTTTTTTCCCTGA TTATTCGTGACTTATAGGGGGTTTCATTATATAATAAATATCCAGAAACATGCTTGTTATAATGGACTTGTGAAGTTGAA TTCAAATTATTGTGTTTCCTTCGATGTAACTGTGAATTTGTTGCAATTACCGTTTTATTTTCTTATTTGTTTGTGATTGG TACAAAGCTGGTTTTGATTGGTGCTTTTTGTTTGTGATAGTGTGGGCTCTGAGGTCAAGTCTATGATCGAGGAAATGAGG TCCAAATTCGAGAAGGACAGGTATATCTGAATCATTCCATGTTTAGAATGTGCTACTGCTAGCATCCTTCATGTGTGGAC TTTATTTATATATTTAGTTTTAATTTCATCTTTTGTCCCTATGGTTATACAAATGTATGATTTTGGTTCCTATGGTTCTA ATTGATCCTTCAAAATTGAAGAATGTGGTCCTATGCTAACCAATATTTCAATATTTCACCTGGATTACAATTTATGACAT GGATAGCAGGTTTAGACCATATTTATGTCATTTGCAATGTTGAACATTGTGGTTAATGTCAGTTCTCCTTTAGTTATTAG TTGACAAGTTAATTTCATGACCATGTTTGTTCAATTTTAAAATAAGAGATTTTATTTGAGTAATTGAAACTATAGGATTC AAAATCACACATATGTAAACTAATAGGGACCAAAAATGCAGTTAAGTTATTATTTACTTATTCTGCTATACTGCACTGAA GAGTATTTTTTCTTTCAATATCAGGCAAAATTTTGCTAAGGCACTTTCAAAGAGTTCTAAAGAGGTTTGTAAATGACAAA TGGTTTATATTTTTGACAACTGAGTCAAAAGCAGGAAGGGAATTAAGTGTTGCTCAAACCTTGTTTAATTATTGTTTAAT GATTGTAAGCATGCAGTTTGAAAGTTCCTTGAAGAATGAAACTGCTAAGTTTCAAGCACTTTATGAGAAATTTTCCAAAG AGAAAGCCGCTTCTCTGCAGGCCTTGAAAGGTACTCCCTGTAATATTATAATTAGAGGACTATTGAACATAACATAATCT GCTATGAGAGCTGACTTCTGAATGACTGAAACTACTGGTGATATCTTAGAATTATGTTTTTTACAGCAGCTGGTAATTCC TCTAAAATGAAGTGCTACATTTGAAATTGAAATATATGGTGGTAATTCATCTGTTTCTCATAATCTTACTCTTTGCTGCT AAGATGCTAATTACCACTGCCCATTGACAGATACCATATCAAAATATGAAGAGGAAAAGGAAAAGCTATTCACGAGATAT GAACAACTGAGTATGCTACAGCTATACACTTTTATCCATTCTTATTATGAACATATAAAGTCTGCATCCCGAAGTCAATG ATCTTATTTTCTATAATACTTTCTCTACAACTTTATGAATATTTCAGGGAAGAAGGAAAAAGCTATGATATCGGAGCAAG AAAAAGCCTGCAATGATAAAATTGCTCAACTGGAACAGTCATTGAAAAAGAAGAAACAGGTACATAAAAAGCAGCAGGAT CTAGATTTTCAGCAGGTTCATTTGCTCATGTGTTCACTCTGATTAATTTTTGTCACACAGGATGATAAAACTTTCAGCAT CCTAAGGAAAACTCTTGGCTCATTCTTGGAGAGTACTTCGGATGATGATTTCCCACCTGATGATTGAAGACTTCAATGCA GGGAGATCTTCTAGTTCAGTCACTTTTACTGACTCTAATCGTATAGCTGAACAGTGGTTATCATAGGCAAACTAGAGATG AACTCTCTTTCCATAGTTTTCCTTATATTTTATTCTCTTATTACGATCAACTGTTGAAAATATAATTCTTACGAGTTAGG ACACAATTCCAATGCAATATGTGATTATATTACGATATATATATTTCCTGATCTTAACGCGGTGACTCCACCTGCTGCTG TTCCATTTTCTCTGGCTAGACTATTTTTAGTATTGTGAGGTTTGAAGAGATTAAATCGAATCAGAGTGATTAAGGTTTCT TAAGTAGAGAACCTTTGCAAAAATAGAAGGTTCTTAAGTAAAACAATCTAAAAATTATAGGAATATTACTTAGAAAACTT GACATTAACAAATAATTCCATATGGATAACAATTTTGAGATCACAATTTTCCTAATTTGTTATACAAGGATGGCCAAGCT AATAGGCCAATGGACAGACCACTAACAACCAGTTTGGGCAGGAGTTGGTTTCCTTTGTTGTACAGACCATGGAGGGCGCT TGTTGTGTTCCTGCAAAATAATCATGAACAAAATTATCTTTTAAATAGAACAGACAAGATATATATATATATATATATAT ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCCTACTTTTCTTCAGCCCATTAATGAGTAGCATTCTTT TGGGTGTCTTGATTTTTTGGTGTTTAATTCATACTCAACAGTATTTTCCCTTTCAAAATAGATCAACCATTGAGTGAAAT TCATGATCAGCAGCAATTCAAGTGAAATTTGTATGCACAATCCTTCATCCATTAAGTGAATCACAATATGTAGTCTTTAT CATTCTTCCTTTCATTGTACAAGCTCAAAAGTTTAAGGGAGCATTTAATTATTTTTCAACAGAAAATTATGGGAATATTT ATAGTGATCAATTGACATATGAACACTTATTCAATGTAATTTCATGATATGTCTGGTAAAACAAACTCCATTTCAGAAAC TTGAAAGACTAAGCATATATAAAAAACAAAAATTGCTTTTAGTTACATGATTTATATTGACTTCAAACTCAGATAAAAAG CATGCATCTAAATAGAACTACCGCATGATAAGGGATAACATACCCCGATTTCTGTCACAAATCGACATGCAGAACATCTA ACTTGTGAAGCACCATAAGGGTACATTAGCAATACCGCACAACTCGCACACTTAACTTGCCCAACCTGATCAGCTGTAAG AAAGGAATGGATTACTTATAAATAGTTCGCAACACAAAAAGGATAATGCCATATGTCGTTCAGTCATTTTGAACTAGTAA GGTGATCGTTGAGAAAATAGAATAGAGTTATACAAGTGAGAATTTCAACATTGGAAAGATTTAAGGTCAATACGCAGCCT ATGTGCATTAATGGAGAGATTTACCATAATAAAGTCTCTAGTTGAAAACTTAAAGCATGATAGGATCATCAAATCCTACT TGGTGTTTGGACTGCAACCATTCTATGGAGACCAAAAATTCTTTCTTTTCTTTCTTTATTTTTCAATAAATATTATAAAT TTTAATAAACATACAAGATTATTAATCCAAGCAGAAAAGCTCACAACTACACATGACAGTAGTCTTGGACCAAGCATAGA ATTGCTTATGAAAATATTTACTCGATCAAACAAATAAAAATATAACCTAAAATGCAAAATTGAGACTCCCAGGTCACATC AGAGACGTAGAGGAAAAGAACAGACCTTCTAATACAATGTTGACAGTCTGACAACATGAACATTTGACATGTTTGGCACC TCGTGGATATGAAAGCAGGCGACGACAAGAACCACAAACCATTTGAGCTAGACCTGTTAATGCAGCTTACTAGTCAGAAT CATCAAATTGATATCCAATTTGGTGCGTAAGTCAAAATTTTGAAATTATATATAAAAGACAAATCAAGGATACTATTAGA GACATATCAAAAACAGTACAGCAATAAACAACCAATTCCTAGGGTGCGATTTATTGAAAGGAGGGGAGGTATTTTCAATG TTATTGTGTTTGGTTAAGAGGAGGGGAGGGGAAATAACCCAAATTTTATTTGGTTCAGAAGGGGAGGGGAGGGATTCTAA AACATATTTACTTTTAACCGCTTTTTTGTTTACTCAATATGAAGAAGATTTATTTTTTCAGACAAAATACATACGCACAT ATCCGTTTCATAAGAAAAAATTGTTTGAGCTACATACACTTAAGCAGATGGTTACCTAAACCATGAGTAACGATATCAAA AAATCAATGGAGCTAAAAGATCATTATACAGATGAATGAGCTTCCATGAAGATGCTCTAGGCTCTATTGATTATTGACGA CTTGAGGGGAGGGGGCATTGCCTTGCTGTCCTGGCCCTCAGCC
CDS sequence (LotjaGi4g1v0055800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAACCAAAACCGTATCGAGGAAGCGAGAATCCGAACAACTCGATCGCGCCAAATCTGACAAGAAGAACCGATC AAACGCCGCACACAATCTCGATCTCGATCTCGATTTCGATCTCTCCGATGATCTCAAGGGAATCGTGTCGGCGTTGAATT TGATCAGAGATAAGGCTCAGAAGGATGGTCAGAAGAAAAACGAAGAGACGATTTCTAGTGTGGGCTCTGAGGTCAAGTCT ATGATCGAGGAAATGAGGTCCAAATTCGAGAAGGACAGGCAAAATTTTGCTAAGGCACTTTCAAAGAGTTCTAAAGAGTT TGAAAGTTCCTTGAAGAATGAAACTGCTAAGTTTCAAGCACTTTATGAGAAATTTTCCAAAGAGAAAGCCGCTTCTCTGC AGGCCTTGAAAGATACCATATCAAAATATGAAGAGGAAAAGGAAAAGCTATTCACGAGATATGAACAACTGAGGAAGAAG GAAAAAGCTATGATATCGGAGCAAGAAAAAGCCTGCAATGATAAAATTGCTCAACTGGAACAGTCATTGAAAAAGAAGAA ACAGGATGATAAAACTTTCAGCATCCTAAGGAAAACTCTTGGCTCATTCTTGGAGAGTACTTCGGATGATGATTTCCCAC CTGATGATTGA
Protein sequence (LotjaGi4g1v0055800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSATKTVSRKRESEQLDRAKSDKKNRSNAAHNLDLDLDFDLSDDLKGIVSALNLIRDKAQKDGQKKNEETISSVGSEVKS MIEEMRSKFEKDRQNFAKALSKSSKEFESSLKNETAKFQALYEKFSKEKAASLQALKDTISKYEEEKEKLFTRYEQLRKK EKAMISEQEKACNDKIAQLEQSLKKKKQDDKTFSILRKTLGSFLESTSDDDFPPDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 216 | 216 | 1.0E-95 | – | |
| PANTHER | 1 | 216 | 216 | 1.0E-95 | – | |
| MobiDBLite | 7 | 29 | 23 | - | – | |
| SUPERFAMILY | 61 | 186 | 126 | 3.53E-6 | – | |
| Coils | 126 | 160 | 35 | - | – | |
| Coils | 169 | 189 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0055800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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