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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0055900 |
| Transcript ID | LotjaGi4g1v0055900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein LSD1; TAIR: AT4G21610.1 lsd one like 2; Swiss-Prot: sp|O65426|LOL2_ARATH Protein LOL2; TrEMBL-Plants: tr|A0A0R0J664|A0A0R0J664_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6725531..6730645) extracted from Lotus japonicus Gifu genome v1.2.
CTTGACTATGACCGATGGCTGGTTTTGGTCTCTTATTGGAGTAACTTCCGGAAAAAGTCCCTTTGATGAGGCGAACCACC GTGCTTGCTCTTGCCGGAGACTTGGGCCCACCACCGTTCATACATGGACATTCCACAACAATTAATGAGCTGAAGTTTTT GTTTTTCATTTTTGATTGAATAAGGGACCATTATCAATTCCTAATCCTAAAAATAAAAGTGTTGAAACTTGCGGGGTTAA GTGTTTACAGTCAAGTCAAAAGTGCGGAGCTAAGCACAGAGCGAGGATGCAAAGTCATGAAGCAGAGAAACAAGAAGACG GTGATGGCCCACCGCCGGGGTGGCAACCAAAGAAAGAAGAAGACGACGATGGTCCACCGCCGGGGTGGCAAACAATCCTC ACTCCGCCACCGTCACGTCCATCCGGTGAGCTCATAGTCATACCTTCCACTGTAGTTCTGTTTGCATTTGCTTCCCTCTT TTTCTACTTTCAATATTGAAGGATACCCAGTTTTATTTTTGGGTAAAGTTCTAATCTTTTTGAACTAGTTGCGCGTTTTC TAAACAGCTACTGCACAATCTAGGAGATTTCATGGGTGGGTTTTGTTTTGTTTTGTTTTGTCTTTGTTCTTCTGAATCGT ATTTTTTTTGTTATGAACTGTGAAACATGCAATCCTTGAGTTTTTTATGTTTTGAAGTGTATGTGATTACAGGCATATAT GTATTTTATTTTCTCTGGTGGCACAATGAGGTTCATGTCTCATTGAGTTAGGTTTTACTTTTTTTAAGCTAATAGCTTCA AGATTCTGGTCTAATTGTTTCTCAGTAGAAGATTTTTGAATGAGGTATAATAGCTGCAGAAGGGGTGTAGTGTAATGTTT GGTTGGAGGGGAGGGTTTTTTTAAACTTAGCTTGTTTGGTTGAATTTTTAGGAGGGGAGGGTAGGGGAATGGAGGGGGTA CAAAACCCCTCCTAACTCAATTTTGTGTCCCCTCCAAAAGTGGGGGGGAATGGGAGGGAAAACATTTTATTAGACAAAGA ATGACCTTCCCTTGTAATCAATGTCTTTCTGCTACCCTGCTACCCATGTTCTTCCTTGGTCCTGGCGTTTAGGCCTTCAG TTATGGACCACATGAATATCAGAAGAAATTGCTAACAGGTCAAAGGGCTGCAAAGCTGCTTGACAAAGTGGCTGAGGGCC AGGACAGCAAGGCAATGCCCCCTCCCCTCAAGTCGTCAATAATCAATAGAGCCTAGAGCATCTTCATGGAAGCTCATTCA TCTGTATAATGATCTTTTAGCTCCATTGATTTTTTGATATCGTTACTCATGGTTTAGGTAACCATCTGCTTAAGTGTATG TAGCTCAAACAATTTTTTCTTATGAAACGGATATGTGCGTATGTATTTTGTCTGAAAAAATAAATCTTCTTCATATTGAG TAAACAAAAAAGCGGTTAAAAGTAAATATGTTTTAGAATCCCTCCCCTCCCCTTCTGAACCAAATAAAATTTGGGTTATT TCCCCTCCCCTCCTCTTAACCAAACACAATAACATTGAAAATACCTCCCCTCCTTTCAATAAATCGCACCCTAGGAATTG GTTGTTTATTGCTGTACTGTTTTTGATATGTCTCTAATAGTATCCTTGATTTGTCTTTTATATATAATTTCAAAATTTTG ACTTACGCACCAAATTGGATATCAATTTGATGATTCTGACTAGTAAGCTGCATTAACAGGTCTAGCTCAAATGGTTTGTG GTTCTTGTCGTCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGTTGTCAGACTGTCAACATTGTA TTAGAAGGTCTGTTCTTTTCCTCTACGTCTCTGATGTGACCTGGGAGTCTCAATTTTGCATTTTAGGTTATATTTTTATT TGTTTGATCGAGTAAATATTTTCATAAGCAATTCTATGCTTGGTCCAAGACTACTGTCATGTGTAGTTGTGAGCTTTTCT GCTTGGATTAATAATCTTGTATGTTTATTAAAATTTATAATATTTATTGAAAAATAAAGAAAGAAAAGAAAGAATTTTTG GTCTCCATAGAATGGTTGCAGTCCAAACACCAAGTAGGATTTGATGATCCTATCATGCTTTAAGTTTTCAACTAGAGACT TTATTATGGTAAATCTCTCCATTAATGCACATAGGCTGCGTATTGACCTTAAATCTTTCCAATGTTGAAATTCTCACTTG TATAACTCTATTCTATTTTCTCAACGATCACCTTACTAGTTCAAAATGACTGAACGACATATGGCATTATCCTTTTTGTG TTGCGAACTATTTATAAGTAATCCATTCCTTTCTTACAGCTGATCAGGTTGGGCAAGTTAAGTGTGCGAGTTGTGCGGTA TTGCTAATGTACCCTTATGGTGCTTCACAAGTTAGATGTTCTGCATGTCGATTTGTGACAGAAATCGGGGTATGTTATCC CTTATCATGCGGTAGTTCTATTTAGATGCATGCTTTTTATCTGAGTTTGAAGTCAATATAAATCATGTAACTAAAAGCAA TTTTTGTTTTTTATATATGCTTAGTCTTTCAAGTTTCTGAAATGGAGTTTGTTTTACCAGACATATCATGAAATTACATT GAATAAGTGTTCATATGTCAATTGATCACTATAAATATTCCCATAATTTTCTGTTGAAAAATAATTAAATGCTCCCTTAA ACTTTTGAGCTTGTACAATGAAAGGAAGAATGATAAAGACTACATATTGTGATTCACTTAATGGATGAAGGATTGTGCAT ACAAATTTCACTTGAATTGCTGCTGATCATGAATTTCACTCAATGGTTGATCTATTTTGAAAGGGAAAATACTGTTGAGT ATGAATTAAACACCAAAAAATCAAGACACCCAAAAGAATGCTACTCATTAATGGGCTGAAGAAAAGTAGGCTTCACACAC ACACACACACACACACACACACACACACACATATATATATATATATATATATATCTTGTCTGTTCTATTTAAAAGATAAT TTTGTTCATGATTATTTTGCAGGAACACAACAAGCGCCCTCCATGGTCTGTACAACAAAGGAAACCAACTCCTGCCCAAA CTGGTTGTTAGTGGTCTGTCCATTGGCCTATTAGCTTGGCCATCCTTGTATAACAAATTAGGAAAATTGTGATCTCAAAA TTGTTATCCATATGGAATTATTTGTTAATGTCAAGTTTTCTAAGTAATATTCCTATAATTTTTAGATTGTTTTACTTAAG AACCTTCTATTTTTGCAAAGGTTCTCTACTTAAGAAACCTTAATCACTCTGATTCGATTTAATCTCTTCAAACCTCACAA TACTAAAAATAGTCTAGCCAGAGAAAATGGAACAGCAGCAGGTGGAGTCACCGCGTTAAGATCAGGAAATATATATATCG TAATATAATCACATATTGCATTGGAATTGTGTCCTAACTCGTAAGAATTATATTTTCAACAGTTGATCGTAATAAGAGAA TAAAATATAAGGAAAACTATGGAAAGAGAGTTCATCTCTAGTTTGCCTATGATAACCACTGTTCAGCTATACGATTAGAG TCAGTAAAAGTGACTGAACTAGAAGATCTCCCTGCATTGAAGTCTTCAATCATCAGGTGGGAAATCATCATCCGAAGTAC TCTCCAAGAATGAGCCAAGAGTTTTCCTTAGGATGCTGAAAGTTTTATCATCCTGTGTGACAAAAATTAATCAGAGTGAA CACATGAGCAAATGAACCTGCTGAAAATCTAGATCCTGCTGCTTTTTATGTACCTGTTTCTTCTTTTTCAATGACTGTTC CAGTTGAGCAATTTTATCATTGCAGGCTTTTTCTTGCTCCGATATCATAGCTTTTTCCTTCTTCCCTGAAATATTCATAA AGTTGTAGAGAAAGTATTATAGAAAATAAGATCATTGACTTCGGGATGCAGACTTTATATGTTCATAATAAGAATGGATA AAAGTGTATAGCTGTAGCATACTCAGTTGTTCATATCTCGTGAATAGCTTTTCCTTTTCCTCTTCATATTTTGATATGGT ATCTGTCAATGGGCAGTGGTAATTAGCATCTTAGCAGCAAAGAGTAAGATTATGAGAAACAGATGAATTACCACCATATA TTTCAATTTCAAATGTAGCACTTCATTTTAGAGGAATTACCAGCTGCTGTAAAAAACATAATTCTAAGATATCACCAGTA GTTTCAGTCATTCAGAAGTCAGCTCTCATAGCAGATTATGTTATGTTCAATAGTCCTCTAATTATAATATTACAGGGAGT ACCTTTCAAGGCCTGCAGAGAAGCGGCTTTCTCTTTGGAAAATTTCTCATAAAGTGCTTGAAACTTAGCAGTTTCATTCT TCAAGGAACTTTCAAACTGCATGCTTACAATCATTAAACAATAATTAAACAAGGTTTGAGCAACACTTAATTCCCTTCCT GCTTTTGACTCAGTTGTCAAAAATATAAACCATTTGTCATTTACAAACCTCTTTAGAACTCTTTGAAAGTGCCTTAGCAA AATTTTGCCTGATATTGAAAGAAAAAATACTCTTCAGTGCAGTATAGCAGAATAAGTAAATAATAACTTAACTGCATTTT TGGTCCCTATTAGTTTACATATGTGTGATTTTGAATCCTATAGTTTCAATTACTCAAATAAAATCTCTTATTTTAAAATT GAACAAACATGGTCATGAAATTAACTTGTCAACTAATAACTAAAGGAGAACTGACATTAACCACAATGTTCAACATTGCA AATGACATAAATATGGTCTAAACCTGCTATCCATGTCATAAATTGTAATCCAGGTGAAATATTGAAATATTGGTTAGCAT AGGACCACATTCTTCAATTTTGAAGGATCAATTAGAACCATAGGAACCAAAATCATACATTTGTATAACCATAGGGACAA AAGATGAAATTAAAACTAAATATATAAATAAAGTCCACACATGAAGGATGCTAGCAGTAGCACATTCTAAACATGGAATG ATTCAGATATACCTGTCCTTCTCGAATTTGGACCTCATTTCCTCGATCATAGACTTGACCTCAGAGCCCACACTA
CDS sequence (LotjaGi4g1v0055900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAGTCATGAAGCAGAGAAACAAGAAGACGGTGATGGCCCACCGCCGGGGTGGCAACCAAAGAAAGAAGAAGACGA CGATGGTCCACCGCCGGGGTGGCAAACAATCCTCACTCCGCCACCGTCACGTCCATCCGGTCTAGCTCAAATGGTTTGTG GTTCTTGTCGTCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGTTGTCAGACTGTCAACATTGTA TTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGCGAGTTGTGCGGTATTGCTAATGTACCCTTATGGTGCTTCACAAGT TAGATGTTCTGCATGTCGATTTGTGACAGAAATCGGGGAACACAACAAGCGCCCTCCATGGTCTGTACAACAAAGGAAAC CAACTCCTGCCCAAACTGGTTGTTAG
Protein sequence (LotjaGi4g1v0055900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSHEAEKQEDGDGPPPGWQPKKEEDDDGPPPGWQTILTPPPSRPSGLAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIV LEADQVGQVKCASCAVLLMYPYGASQVRCSACRFVTEIGEHNKRPPWSVQQRKPTPAQTGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 39 | 138 | 100 | 5.8E-63 | – | |
| PANTHER | 39 | 138 | 100 | 5.8E-63 | ||
| TIGRFAM | 50 | 80 | 31 | 1.1E-18 | ||
| Pfam | 53 | 77 | 25 | 2.0E-12 | ||
| TIGRFAM | 88 | 116 | 29 | 1.3E-10 | ||
| Pfam | 91 | 115 | 25 | 6.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0055900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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