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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0058000 |
| Transcript ID | LotjaGi4g1v0058000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit beta; TAIR: AT5G11760.1 stress response protein; Swiss-Prot: sp|Q92346|YDH1_SCHPO Uncharacterized protein C6G9.01c; TrEMBL-Plants: tr|I1KLM2|I1KLM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0058000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6988568..6992760) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAAATCAATATGATATATTATGAAAAACGCAATGCCATTGGATCGAACCCAGGTTCCCCATATGATATTTAAATGCT GGGGAACCCTACCACCCAGAGCCAGAGGTTGAAGATTGTGTTACCCTTCGCCCCCTGCGTTCGTTGTTTGCCATCTCGTT ACTGCTGTGTTCACCATTGTCTTCGTCAGTCAGGTATTTATGCTATAGTTACCGTTTTGATTTTGTCTCTTTTGCTTCTT TTCATTGTTACAATTTGATTTCAACAAACTTGCATATAATGAACCTGTTGTGAGTGGTTGGTTGTTTGAATTTTCAATTA GGGTTCCACATTGATGCTTAGCAATTGTTGTTGCTATCCAGCTGTTTGATGTAAATGCTTAGGAATCGGTATCCTACTAT TTGATGTTTGTTTTGTGCAAACTCCCTTGCCCTTTGAGCTCTCACTCACCATTGCTGATTGCCTGGGTTTTGAGAGTGTG GTTTAGGTCAAATTTAATTCGCCATCTTTCGAAGCGCAAGACCTGTGTTTAATATGGCTGTTTATTCTGCTCTGGTTTTT ACCTTTTAATTTGAAAGAACTACTTTACTGTATCACTGGCTGCATGATTCTACCGCATATTATGTGTCTTTGCCACCACA AGTAGTTGATGGATACATAGGGGTCATATATTAGCACAGTAATAGATAAAGGGATCATAAGTCAATTTTCCTTGTTCGAA GGTTAATTGGTTTTGTGGAAGTACACTTTTCTTTGGTGCTTCAATTTTAAGGCTGGAGCTTCAGAAAAACCAAATCTTTG ACCGAAAACTCAACCGGGCGCTTGTGCTTGGTAGAATAAATTCGCAATTAGTCCTGACCACTTAATTGGTCTATAATGCG GCGAGCAATTCATCTCTCTAATTGGTCAGCCGATTTACTTCTTCTACCTTGGAAGGAATGGTAGTTTCTTTGAATAATAA TGGGGGTCCAGTCCTTATAAGGACTTAAAAGGGGACATCTTGGTAGCAATGTTGTAACTTGTAATTGGTATTGAACCAAA ACTGTGCCTAATTTAGGTGGTTAGGCCATTGCTTCAGTTAAGACAAACAAAGCAGCGAAGCTAGGTCTCAAGGCACCTAT TCATCTGTTTGAGGGTGATAGGAAGTACTGAATTTCAAATGTGCACCAGCCTGTTTGAACAGCTCCTTCCAGAAACTACT CATGAAAATCTGCTCTTTATCTGACACAGTTGAGGCTGGAAAACCTTATAGCCTAACAACCTCCTTATGAAAATGCGTAG CTACACCCATTGCTGAAAATGGGTGACTACAGGAGTAAGGAATTAGCATATTTTATCAGTTTGTCTACTACCACGAAAAT AGTATTCTTGCCTCTGGCTTTGGGCAACCCACAAACAAAATCCATTGGAATATCAGTCCAATGTAGAGATAAGGTTTGGT ATTTATTCCTCTAACAAACATTGCAAGCAACAACATAATCTTGAACATCTCATTCTCTTCAAATGAACCACACAAGCCAA TCTCTTTTAAGTTCAAGAAATGAGTGGCCAGAAGCTGAAAAGTCATGAAAATATGAATTTCCCTCTTATGTCAAGTCTTT TTTATGCAAATTAGCACTCTGTAGGATTAATACCAATGACATGCTTTAGATAAAAGCTTAAGAAGGAAACCTTTGTAATG ATCAGTGATTCTGTTCATGTTATTTCAGGCGATCAGTTTGCTTGTAGTGACAGAGTCAGTTTCGTCTCTGACTTCGTTGT AGTTCAGTTCTCTTGATAGATTCAAGCTATGGTATGTTTCCCATGTATGAGCTGCCAGATTTTAACAGTAGTCCAAATCC ATTAAGAAACATCTAATCCAACCCAACTATTGCCTCTTATTAGTCTACAGCATCCTGCTAGCCTTTCATTTCCCTTAATT CACACATCATGTTGATAGAAGCAAATACCAATGTATATAAAAAACTCTTTGGCAGAGTATCTCTTCAATGTCATGCATAA GATCTGAGTAATTTTCTGGCTCCTTTATTATTTTGTCATTTTCTTGCTGAATTTTTTTTATATAATGATAAATGAGAGTG ACTTCAAACTTTCTTGGATTTAATATAAACATAAAGGTGAATTGTTTTCGTTGCTTCTTATCCTTTCATTTTATGTTGTG GAGGATGTCCAATCCTCCCCCATGGTCATCGGATTTCTTTAACAGTCTTCAATTTCTTTGAATGTTGTTAAATTAATGGA TCATTCTTGGCCTACATACGAGCATGAATGACCGAGTGGGTTGCAAGTTGCAACCCTGTAACTGTATAACCCATATACAG AGAAAGATACAGTGCTAGACTGTCTTTATTGAGTCTTTTGACTGGGGAAGAATTTTTGAATTTTGACTTTTTGAGGTTCC TAAATAGTTTCTTTTTCTACTAAGCCTAGTTCTGAACCAGCTTGTAAATATTGGCATTGTAATGACCAATGAGACTATGT TTTTAGTGTGGTGAATTTGTTCAGTCATTTATGTATTGCTGCAGCTATTTTGTTGTACAAAAGAAGGCTTAGTGAACTAT AGGGGGAAAGGCATATACAACCATCCTAAACTTTGTGCTTTTTGCAAATAGGCACACTTATATTATCTTCATTGTGTCCG AGTTAATCCTTAAACTCTTGTTATTGTTATAATATATCATTATGTTCACTATAAGTAAGAGTTTACAGATTAATTGTGAC AAAGTGTGACCAGTTAAGATCTCTAATTGCTGAAAACACAATTTAATATTTAGAGTGTTTGTATTTTCTTTTCCCTAATA AAAATAAAAGGTTTAAATTTATTTACCATTAGTAAGTTGACCAAATTTTATGAAGAGTCCTGTTATGACAGTATTAAGTG TTTAAGGGTTAATTAGGGTAAAACAATAGCTTAGGGTGTGTGCTTGCAAAGGCCACAATGTTGAGGGTAGTTATTTAAGT GTAATGCTTTTCTTTTTTACGCTTATCTATCATTTTCATTCTCACAGTTTTACATGACATGCAGCTTTCTTTTCACTCCA ATGACAAAGAAGAGTTCTAAGAAGACCCCAAGTCAGTTGCAAGAGAATATTGTTGTGGAAGAGGAAAAACCTTCAGCTGT ACCAAAGAAAGCAAGTAATGAAATTGATGAAATATTTGCTGGAAAAAAGAGGAAGAAAGCTGACGAGGCGGATAAGAGAA CTGATAAAGTAAAGAAGACTAAGAAAAGTAAGAAGAAAACCGTCAGGCCAGATGATGATGATGATAAGTTTGTAGACCGG CCTTCTCGGCCAAGAAAGAAAACAGAGGATGGACTTTCCTTATATTCTGAGGAGGAGTTAGGTCTTAATAAACAGGATGC TGGTGGTACCCCTCTCTGTCCATTCGATTGCTCTTGTTGCTTTTGATGGATAGTTGTATAATGTCTTGTACTCTAATTTC CTTGCTCTAGTGAGCAATGGTTTTTGTTGTTGTCACTTGAAGTTTTGGATTTGTAAGCTTGGGGCATTGCTTTTCCTTTA TTTATAGTTAGGCCACATCTGTCTTAAGTTATATCTTGTGCTGAGCTTGAATTCCTTAGAAATAGATATGATTTCATAAG TGATTCAATTTTGCAACAGGATTGTTTATGCAAACAGCATAAAGTCTATCAATCGGTTGAGTAATCTATCTATCTATCAG AAAAGAGACGCAGGAGGTAACACTACCACCTCATCTCTACTTGTTCACATTCCTTTTTTTTTCACCTCAAATTTTCATAG TTGATTTTAGTTTGTTGTGTCGTGACAGCTTAAGTTATGCATGAAATAACTTTATTACTTTAGGGTGTGCCTAATGTGCA ATGGCCTCTACCCGTTGCACGGTGTAGCAGAAGGTTGAGCGGCAGTGCCATCGCCTCAGAAAAAGGATCTGAGTGGAAGA TGAAGGGGAAAAGGGGCTTGCAATTTAGATGTGTAATGAGAAGAACACAAGTTAGAGAAAAGGAAAACAGATTGAAAGCA TAACCCAAATCTGCTCCATCAATATCTTCTCATCAATTTCCCCAATTTCCCTTCCGGTTCTCCTCACGTGAACCCTCTCA AACCCAAGATCTATGCAGTCTACATGCTGAAACCAAGTCCCACATCGTGAAGGTGAAGGACCCTATCCTAAAAATTGATT TGAACTCACGGAGGACAACCACGTTATCTCGTG
CDS sequence (LotjaGi4g1v0058000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAGAAGAGTTCTAAGAAGACCCCAAGTCAGTTGCAAGAGAATATTGTTGTGGAAGAGGAAAAACCTTCAGCTGT ACCAAAGAAAGCAAGTAATGAAATTGATGAAATATTTGCTGGAAAAAAGAGGAAGAAAGCTGACGAGGCGGATAAGAGAA CTGATAAAGTAAAGAAGACTAAGAAAAGTAAGAAGAAAACCGTCAGGCCAGATGATGATGATGATAAGTTTGTAGACCGG CCTTCTCGGCCAAGAAAGAAAACAGAGGATGGACTTTCCTTATATTCTGAGGAGGAGTTAGGTCTTAATAAACAGGATGC TGGTGGTACCCCTCTCTGTCCATTCGATTGCTCTTGTTGCTTTTGA
Protein sequence (LotjaGi4g1v0058000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKKSSKKTPSQLQENIVVEEEKPSAVPKKASNEIDEIFAGKKRKKADEADKRTDKVKKTKKSKKKTVRPDDDDDKFVDR PSRPRKKTEDGLSLYSEEELGLNKQDAGGTPLCPFDCSCCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 97 | 97 | - | – | |
| PANTHER | 1 | 121 | 121 | 4.1E-38 | ||
| MobiDBLite | 22 | 56 | 35 | - | – | |
| Pfam | 28 | 121 | 94 | 5.9E-29 | ||
| MobiDBLite | 66 | 94 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0058000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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