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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0062200 |
| Transcript ID | LotjaGi4g1v0062200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT1G28470.1 NAC domain containing protein 10; Swiss-Prot: sp|F4HY61|NAC10_ARATH NAC domain-containing protein 10; TrEMBL-Plants: tr|A0A0L9TLI2|A0A0L9TLI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0062200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7583105..7586359) extracted from Lotus japonicus Gifu genome v1.2.
ATCAGTTACGCCCTTTGCCTGCCCTATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAAAACGAAGAAGAACAAGTTG GTTAGAGAACCAAACACAGTTAGTTCAATCAGTGATCAAACACATATAGAAGAAGCAAAAGTGGAAAGTCATATGATTGA ATGAAATAGCTCTTCCAAGTTCCAACCAGAAACAAGAGGTGATTCAGGGTAAACGTGTTGCCGAAGAGACAGCGCGCCTT CTAGTTTTACCTTCTTTTTTTTCTTTTTTTTTTGTTCTATGTTACTTATTCTTCTTCTTCTTCTTCTTTTCTTTTTGTTT TATTATTAAGGGTGCTGATACTGTAGGCATAGAAGCATATGTCCAAAGAGATCATGACATGGCATAGTGACTCAGATCCT GAGGAGAGGGGCATTGAACTCATCACACCCACCATAGTTGTTAATGACACAAAACCAAGCCAAATTCGAACCATAACCTG CCCCTCATGTGGTACTAACATTGAATTACAAGATCAGGTATTCTAATTTTTATTTTATTTTTTATAAAACCCTGCTAGCT TTTGTTTAAGCTCATTTTGTTTTGTTTTGTTTTGTTTTGTGTGAATCAATTAATAGGCTGGAATCAATGACTTGCCGGGG TTACCAGCTGGGGTGAGGTTTGATCCGAATGATCAGGAGATACTTCAACATTTGGAAGCGAAGGTGCTATCCGATGTGCG CAAGCTTCATCCGCTTATTGATGAGTTCATACCAACGCTTGAAGGAGAGAATGGGATCTGTTACACGCACCCAGAGAAGC TACCAGGTGCTGTGTTTCATGTAATTTATTTTAATTACTTCAATAATTTTTCTTAATGTTTGATCGTTTATTTGGAAACA CCCCATTTTGATGATGCACGCATATAGGTTATACTCCTCATTCAAATTCTAATTTATTGGAGAAGAGTGTGCCCGGTACC ATTGCATGAAATAAGGTTTTAGTGTTGAAAATGATTTTGCAAAAGAAATTAAGGCATTTGAGAATGATTGCCAAGTCTCG TGTACTTATTAAGATAAGTAATTTATATTAAGATAAGGGGAGATGAAAATCTTGGCTCTCGCTAAATGCATTTCTTTTGA TAGAGATTCTAATTAAATATTAAATAACACAAAGGAGTGGGGAGATTGATTTGTGAAGATTTAGAGATTAGATAAATGAA GATCCTGGAATTGAATAAGATATTTTACCACTCAAAAAAATAACTTCTCTTTTGCTTCATCTACTTTGGGTCCAAAAGAG ATTAAGTGTCATTCTTAGAAGATGCTATTTATGAGAGAAGTATCACATGATCCTTTAGCCAACTCGTTCAAGTATGTGTT AAAAAGGAAAAGGTTTGTGAGAGTTGTCAATAACAACCAAACTCAATGGTGGCATCTTATCTTACATTAGCATTGTAGCT ATTTCATGATTGTGATATGTAAATGCTATTCCTTATTCTTGAAAAAATATATTTCCATTCTACCTCAATTTAACAAGGTA TCAAGTAGAAGTCTATTGTTTGGCAAATTACCATCATCTTAATTGGATCATTTCCTACTTTTAATACGTGATGAGGGATA AATAGTAAGATTATCCATTTTAACTTCTAATTTAGGAACCAAATCACTTGCCCTCTTTGTGCATCTCTTTCGCCATCTTT ATTGAAAATATTTTTTTCCTATAATTATCTTTTTTTTTTGTCTATTTTGCATTCTATATATCATTGCCATTTTTTTATGA GAGCCGCATGAAAAACTACACAAAATAGGAACAGCCAATTTCAATCCTAACTCTTAAACAAACATGGATCACATATTAAC TACAAGGTAATTAACTCTTAATAATCAAAAGGAAAAAAGAAATAAAGAACAAGCCAAAGTCTTGGAGAAGCAATTGTTCT TTTCAACTTTTCAATCTTCACCAGCAAGCCATTTAAGTCCATCTAAATCTAAACCAAATCAAAAGAGTTCCTCAATCTAA TCAAAGGTGAGTTTAATTTTGATGGAGTTGTACACTGAAGATTCAATCCAGAACACACATGCTTAGAAATAGTTACATAA TTTTTCATTTTGATTATGAATTAAATTTAAAATTTAGTTTTTGACGAAGCAAACAATCATTAAACACGAGTATATAAAAG TTTTACACTGATCCGCCATTATTCTCATCAAGGATACATGAAACATTATTCTTTCAAGTTGCAGGTGTAAGCAAAGATGG ACAGATCCGCCACTTCTTCCACACACCTTCGAAAGCGTACACAACCGGCACAAGGAAAAGAAGAAAGGTCCATACTGACG AAGAAGGAAGCGAGACAAGATGGCACAAAACAGGCAAAACAAGACCGGTTTTCGCCGGCGGCGGCATAGTGAAGGGCTTC AAAAAGATACTGGTCTTGTACACCAACTACGGAAGGCAAAAGAAGCCCGAGAAGACCAATTGGGTGATGCATCAATACCA TCTCGGCAGCAATGAAGAAGAGAAAGATGGAGAGTTAGTGGTTTCAAAGGTCTTCTACCAAACACAACCTCGGCAATGTG GGACTAATTCCATTACCAAGGATCCTTATGAGAAAGTTATACTGACTAGCCAAAACCAAAGTGTCCATGATGATGATAAT TTAGCTCTGAAAAATGCAGCTCTTGTGGATTACTACCATCATCCTTTCATGAATTATGATCATGTGGGTCATAATATGGA TAGCTCGTCTCAGCTTATTCCAAACTTCGTTGTGCAAGGTGATAGCTCTTCTTTCATTCGGTTAGCAATGGATGCAAACA AAGCCAGGTTTGAGAGGAAATAGCTTTAATTTGTGGAAAATTTCTTGGAAGACCATGCATAGTGACAATGACTACATAGA TGTTGATGTCTTTTTTATAAATACATGACAATATTTATTCTATATATGGGGTTAGAATGAAGGAAGTGAAGGTCATATAC ATGGGGAGGACTTGACCCATAGTTGAAATTAAGAGCCAAGGGAGATATGTTTTGGTCGTGGTCTAATTTTAAATTTAATG TACAGGTATATATATATACACTAGTGAAATCTTTCACATCTGCTTCACTATATGTTAAAATATATTGTTATATATGATAT TTGGACATGGAAATGTTTAATTTTCCTTTCCTTTTCTTTTAAATTTCTAACAGAATAAATGTCGACAGAGATGTTTGTGA TTACATTTATCTGTAACTTCAATACGAATGTAATTATTTACCACTGAGATTTTCG
CDS sequence (LotjaGi4g1v0062200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAAGAGATCATGACATGGCATAGTGACTCAGATCCTGAGGAGAGGGGCATTGAACTCATCACACCCACCATAGT TGTTAATGACACAAAACCAAGCCAAATTCGAACCATAACCTGCCCCTCATGTGGTACTAACATTGAATTACAAGATCAGG CTGGAATCAATGACTTGCCGGGGTTACCAGCTGGGGTGAGGTTTGATCCGAATGATCAGGAGATACTTCAACATTTGGAA GCGAAGGTGCTATCCGATGTGCGCAAGCTTCATCCGCTTATTGATGAGTTCATACCAACGCTTGAAGGAGAGAATGGGAT CTGTTACACGCACCCAGAGAAGCTACCAGGTGTAAGCAAAGATGGACAGATCCGCCACTTCTTCCACACACCTTCGAAAG CGTACACAACCGGCACAAGGAAAAGAAGAAAGGTCCATACTGACGAAGAAGGAAGCGAGACAAGATGGCACAAAACAGGC AAAACAAGACCGGTTTTCGCCGGCGGCGGCATAGTGAAGGGCTTCAAAAAGATACTGGTCTTGTACACCAACTACGGAAG GCAAAAGAAGCCCGAGAAGACCAATTGGGTGATGCATCAATACCATCTCGGCAGCAATGAAGAAGAGAAAGATGGAGAGT TAGTGGTTTCAAAGGTCTTCTACCAAACACAACCTCGGCAATGTGGGACTAATTCCATTACCAAGGATCCTTATGAGAAA GTTATACTGACTAGCCAAAACCAAAGTGTCCATGATGATGATAATTTAGCTCTGAAAAATGCAGCTCTTGTGGATTACTA CCATCATCCTTTCATGAATTATGATCATGTGGGTCATAATATGGATAGCTCGTCTCAGCTTATTCCAAACTTCGTTGTGC AAGGTGATAGCTCTTCTTTCATTCGGTTAGCAATGGATGCAAACAAAGCCAGGTTTGAGAGGAAATAG
Protein sequence (LotjaGi4g1v0062200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKEIMTWHSDSDPEERGIELITPTIVVNDTKPSQIRTITCPSCGTNIELQDQAGINDLPGLPAGVRFDPNDQEILQHLE AKVLSDVRKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHTPSKAYTTGTRKRRKVHTDEEGSETRWHKTG KTRPVFAGGGIVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGTNSITKDPYEK VILTSQNQSVHDDDNLALKNAALVDYYHHPFMNYDHVGHNMDSSSQLIPNFVVQGDSSSFIRLAMDANKARFERK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 308 | 303 | 4.3E-155 | – | |
| PANTHER | 6 | 308 | 303 | 4.3E-155 | – | |
| SUPERFAMILY | 58 | 222 | 165 | 2.75E-37 | ||
| ProSiteProfiles | 62 | 222 | 161 | 33.928 | ||
| Pfam | 63 | 203 | 141 | 5.3E-23 | ||
| Gene3D | 71 | 227 | 157 | 4.5E-24 | ||
| MobiDBLite | 135 | 157 | 23 | - | – | |
| MobiDBLite | 141 | 157 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0062200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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