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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0062700 |
| Transcript ID | LotjaGi4g1v0062700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT2G33860.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; Swiss-Prot: sp|O23661|ARFC_ARATH Auxin response factor 3; TrEMBL-Plants: tr|D3GBU6|D3GBU6_LOTJA Auxin response factor; Found in the gene: LotjaGi4g1v0062700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:7738880..7745470) extracted from Lotus japonicus Gifu genome v1.2.
TGGCAGCTGAGAGTCATTTGTACAAAGACTGCGAATGGTGGGGTGATCCCCCTGTGGGTATCCTATGACACTTGGCAGCA GATTTTCCTAATTGAATGAAGTTATGTTGTTATCAAAAAAAAAAAAAAGAGAAAGTAAAAGGAAAGAAGCCCCAAAAAAG AAACAAAAGGAAAACTTGGCAGAGAGTGGAGGCAGAGGGTGGTGTGTGGTGTGGGATGGAAAAGACAGAGAAAAGAGAAG AAGAGGGTCTCTTTCTTTTTGGAGTATTGGGTCAGGTTCTTCTTTTAGAAGCAATGCAATGCCAAAGTTACTCACGCTCT CTGAAAATGCTGCAGCACTAGGCATGAAAAAACAACACCTTCTTCTTCTTCTTCTTCAAATACTAGTACTGCTTCCCTTC TTCTTCTTCTCTCTCACCTTCTTCTCCAACTACCTCTCTTCTCTCCTTCCATGGCGGGCTTGATCGATCTCAACACGGCT GAGGACGATGAAACGCCGTCATCTGGTGGCTCTTCTTCCACCTCTGCCACCAGCATGAGTATTACTACTGCAACCCCTTC TGCTTCTTCTGTGTGCTTGGAGCTCTGGCATGCGTGTGCGGGTCCTATGATCTGTCTTCCGAAGAAAGGAAGCGTTGTTG TGTACTTTCCTCAAGGACACTTGGAGCTGGTTCAGGATCTTCAGCTTCTTCTCCCGAACATTCCACCCCATGTGTTCTGT CGTGTTGTTGATGTCAAGCTTCATGTGAGTGTTCCTATGTTGTCTGTAACTGGTCGGGTCAGGTTTTTGTTTTTCTTCTC AAAGTTGGTTTCTTTTTGGGTTTTCACATGTGGGTTCTATTTGCTTGCTGAGGAAAATTTTGGGAAAATTGGTTGTGTCA GTTTCAAGCTTAACAAATGATACACTGTTGACAATTTGGGGATAATAGTCATTTTTCTTGTATTTGTGCACTGTGTATAT GCTTCATCTCTCAGTTTCTTCTTGTAACTTTTGAAGGGTTGGTGCTTTGTTTTTGCAGGCAGAGGAAGGGAGTGATGAAG TGTATTGCCAGGTTTTGTTGGTTCCTGAAAGTGAGGTGAGGTGAAGCTAATTTATGATTTCAATTCAGTTCCATTTTGGA GAGTGAGCTGAAAAAGGAAAGAAATCTCAACTCAGATTCTTGAGATGTTCCATACCTAAGTCTTAGGGGCTTAGTAAAAT TAACCAATTGAGATGATTATATTGAAATTGCTCAAATTGAGCTAAGTTGAGTGTCATCTCTCTGCAAATCAAAGGCGTCA AACAGTACACAATCTAGCTCTAGACAACTTTTTTTATCTCTTGTGTCCATGTTACTTGTCCTTTCACCAACCCTTACCAG TGAAAAAGAGAAATACAAAATATTCTCTGATTGAAAATTGAAGGAAAAAGAGAGAGAGACAGCTAGATTAGTATTAAATG AAGTGCCTTTACTAACTGAATTTGCATGAACTTGGCCACTGTTTGTGTAGCAAGTGCAGCAGAAGTTGCAGGAAGGGGAA GTTGATGCTGATGGTGAAGAGGAGGAGGATACTGAAACTATGATGAAGTCATCAACACCCCACATGTTCTGCAAGACTCT CACTGCATCTGATACTAGTACTCATGGTGGATTCTCTGTGCCTCGTCGAGCAGCGGAAGATTGCTTTCCTCCCCTGGTAA TTATGAATGATGATGTATTCATTTTGTCTTGTGAAATTGAGTCCTTTTTGCATACTGCAGTTAAGTTTTCTCTCATAAAT GTTTTGAGATCAGACATCCTTGTTCAATTCGAAAGTCCTTTCATCAAACAATTGGCATCAAGTTTCCTACATTTAAATCA GATTGTTGTTCCAAAGCATTTTGAATATAAGTCCACTGTTTCTTTAGGATTACAGTCAACAGAGACCTTCACAAGAGCTT GTGGCAAAGGATCTGCATGGCCGGGAATGGAAGTTCCGTCATATTTACCGGGGTGTGTCACTTATGTCTCATGTCTGTAA GGAAAAGAATAACCCAGCTAGAATAGCACTTGGCTGATTTTGACTGGATTTCCTGTTTCTCATTAACAGGGCAGCCACGG AGACATTTGTTAACAACCGGATGGAGTGGATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTTCTGTTTCTTAG GTAAGAAGACCTAGATTCTATCAAATAATAAGTATTACTTGGGACAAGGACAGGAACAACACTTATACTTCATGACAGGG GTGAAGATGGAGAACTGAGATTGGGAATTCGTAGGGCAGCTCAATTGAATAATGGGTGTACCTTTTCTGCTCTCCCGGGC CAGCAATTGAATCATAGCAGTCTTACTGATGTGTTTAATGCTTTATCTACAAGAAGTGCCTTCAGCGTTCACTACAATCC AAGGTATTTTTTGGTTCTTTTCTTCTCACTTCTTTAGTAGTTATTGAAAGAGAAATGTCAGTTTCTATCTACAATTTGTA CTTTGTAGAGTGTCATGTTTGTATGTGATAAAATTCAGAAGGGTGTTTAGTTAAATATGATATAAACAATCACTTAATCA GTTTGTCCACTTTTTTTTAGCTTCACACTTCTACTTTAATGTGCAAAACTAGAGATTTCATTTGATAGAAGAAAACAAAA CTAAATCCAGTTCATAGCTAGAACCCACTACTTATTTAATGCTTCCAGTTACTCCACATGTTTTTTAGTGTTTTATCCAT GATTATATGTGCAGACAGAGTCCAGCTAATATTCTATGTTGTTTCTGTGGATGCATTATGAGATTTGTACTGGAACTTCT CCTTTGTGGCTGTCATTTGTTTTTAATTGCTTCACCAGAAGTTTACATGTTCCATGCCTTGTGCCAAATACATTCATTAA TCATCTTCTCTCATTATCTTTCCCAATGGCTTAGAGGTTTGTCCCTTAGTGAATAACTTCCCCTTTCAACTTGTGGGAAA TCATTATCATGTGAATATCCTTGCAACATATCATTCCTGCTTTTACTTCCATCCTAACTCATTGCCCTAATAGCCCCCTA TGAGTAACTCTGCAATGCAATCACTATTGCTTTTGTTATTGTTAATGCCTAGGTGTACATGTAGTTAAGTACCTTCCACA CACAAATGGATACTTAATAAATCAAGTAATTATGCTGGCACAACTTATGAATTTTGAGATATTTTTTTCCCATTCTTGCT TTCACATAAATATACTGACTTGGTCTAGTTTTCAAGAATCTCTGGTGATGGTTCTTCTGTTTTTTTTTTGCCTTTCTTTA TTGCCAAACATGGCATCTGATTAGTGTCTTCTAAATTTTCACCTTTCCTATGTAGGGCCAGCTCATCTGAGTTCATCGTA CCTATCCACAAGTTCTTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGAATGCGTTTTGAAACCGACGA TGCTGCAGAGAGAAGGTTAGTTCATGATTATGCTTGCTGCTTTTAGATAACCCTATTAGAAAAGTCTCTTAGTCCAATTT CTTTTACGCAGATGTGCAGGATTAATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATG CCTACTGGTAATTGCTGGGGTCTTCCTGATTCTTTAATATAAAATTATCATTTATAAGTGTGGGTTAGGAGGTGGGTGGG TGTTCGGAAACGCGAGGCTGTATGAGTACTTTGGCTTTTTAAGGAAATACTTATGGTTTTGCACTTTTGCTATGTCTTTG TTGCTGTTTCATTGGTGTTGTTGTGGCTCCTCATTTTTATAGCTGCATAGCATATGATGTCCAAGCCTGCTTGTGTTATA GCATAAACTTTTATGCCTGCAGTCTTATTTTACATTTTAAGGGTACACTTTGCATGATTGAGTTTTCTATACTCAAATCT AAAGTTAATAGTCTTGTAGAAATTTACACAGATTAGCCTTTCACTTTACTAACTACATATTATATAACCTCAGGATAGGA TTTTCAAACCAACATAATATCTCACTTTTACTGTTTACATTATCTTTTGATACGATAATCTATACCTTATGTTATGTAGA GACTCAAGGAAGTGACTCTTGATCTCATTTGATATGCTTTTTCAGTTTATGCAATTATGAACTTGAAATTATATAGTTGA AGAGAATAATATTATAACTACCTCAGCAGATTGGAAAAGTAATTAAGTATAAAATACCAATAAGATCTCAAGAAGTGGTA ACGAAAAAAATAAAATTAAACATGAGCATTCTCAAGACAGCTTCAGTTTTTGAGTAAACATGAGCATATTTCTGGTACCT GTAATGATTAATGAATATATAAATTATAGAAAAGGTCATTCAAGTACCTGTTTGAAGCTAGTAAACCTATGAGAAAAGCT TCCCATGCTAGTAGTAGTAGTGACTTAAGTACCATATTGTGATTGGCTCTTTGGTTTAAATTTATATTACAAATCAGTGT TATCCTTTGTATGTGAATGTATATTTGGTAATTTCTTATGTAACTTGATACTTGTGTTCAGATCATACCCTATTAACCTC ACAAACTGTGACATGTTATGTGATGTGATTCTAAGAGTGACTTTATTGATGGTAGCTGTAAGTTCTTTCTCATCTCTGTA GGTAAGGTGGGATGACTTAGAAGCCACAAGAAATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCCA TCCCCAATAACTTGATGGCAGCTAGTTTGAAGAGGACCAGGATTGGATTGCCTTCAACACAGCTAGAATTTCCAGTTCCC AGTATATTTCAGAAATTTCTTGTCATTTAACTTTGAGCTTTCCGAACTTATGCAACATCATTGATGAGTTGTTCTCTTCT TCTGACAGATGGGATGGGAGCATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGG GCGTTGATACTACTTTTGATGGTATTAATGCGCCGAGTCACCAATCGTATGAATTAAGGAGATGTTATCCTGGTTCAAAC TACCCTGGGATTTCATCAACAGGAAGCAGCATCAGAATCCCTCAAATGAGTTCTGATGTTTCCTACAACAGCATAGGCTT TAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAGGAGCCTCTGGTT ATGAGGCTTGTGGAAATGGTGGCTTTGGAGTTTTTGATGGTTACCAGGTGCTGAGATCCAGAAATGGATGGTCAACCCAT ATGAACAACCATCCTTCACATTTGCATCAATCTGTTCCAGCCGGGCAAGTTTCATCTCCTTCATCTGTGTTAACGTTTCA GCAATCAATCAATCAAGGTGTGAACTTGGAGACCAATAACAAAACCAATCAGGTGATGGAGGGTAGAGTCCACCACCAAG GCTTATATCCTTCAACAATGAAAGGTGGAACGTTTGTATCAACCCCCTCTTGTGAGCCTAGTTTCCGCCGGCAAGCTCAG GAAGATGCTAATTCTTTGGGTTTTATAAATTTGCATAATCAGTTGGATAGTTCACACTCACATGATCCTATTTCACTACT GAGAGGCCCTCAAGAGGTGGTTTCCTCATGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTAACTGAGGGTGCTCGCA GTGCAAATGAGGAGGCTGACCCATCTACAGTCACTTGTCAATTAAATCCTGGAACTTCTTTTATCAGACACGTCGAAGAT GATTTCCGTCCAAGGCATTCGCTTCGGAGCAAGGCAGTTGGAAAATATTGTAGCAAAGTATGTGATCTTTATCCTTTTAA AAAGCATGGTATTTGATAGTGTTGCAGGGCACTTAATAGATTCTGCAGGTTCACTAGCTGAACTTGTTGATAAATGAGAA TCATCATTTATGACCTTGGTGGATATGATCTAAACAAGAGTGAATTATGTGTTTATGCTAGAAGATACATATGGTAGCGC TGAGCTATCAAATTTCATATCAAATTAGGTTTAACATATGCTTGTGATTGCTCATGGCATGCAAATAACTTGCATAGTTT CAAAGCCCTTAGATTGATTCGACAATGTTGTGTGGAAAAGTGATGGTGCTACCTGATTTGAAGTACTTGGCTACTTGTTC TTTATTTCTTTTACGTTTGTTTCTCGGGTCAACTATCTGTTTGCAATTTTCTACTCATGCTGGAATCTCTGAACTTATCA AATACTTGGTCATATTGTCTGCAGGAAGTGCTGCAGTATTGAGTTGAAAATCATGATGTATGCCAGCCCTGACGCTGGCT TGAGGTAGCAATGATGTCCGTAGCTGTTGAAGTTATGTGTTTTACTATAATAATGACTTATTTTGGTTACTAGACAATTG TTGTACCTATTCGCCAAATTTAGGCATTTATCTTAAATTGGCTATGAGCCTATGACCACATTCAAAGTCCTTGTATTAAT CTTTTGTGCACTCTTTTATTGACCTATATTGAGGCACCTCAATCCAATGCATATCTATCCACGTTTTTGGTCATATACAC TGCTGAACTAAGTAAGCTAGGTGAAGTACAT
CDS sequence (LotjaGi4g1v0062700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGCTTGATCGATCTCAACACGGCTGAGGACGATGAAACGCCGTCATCTGGTGGCTCTTCTTCCACCTCTGCCAC CAGCATGAGTATTACTACTGCAACCCCTTCTGCTTCTTCTGTGTGCTTGGAGCTCTGGCATGCGTGTGCGGGTCCTATGA TCTGTCTTCCGAAGAAAGGAAGCGTTGTTGTGTACTTTCCTCAAGGACACTTGGAGCTGGTTCAGGATCTTCAGCTTCTT CTCCCGAACATTCCACCCCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCAGAGGAAGGGAGTGATGAAGTGTA TTGCCAGGTTTTGTTGGTTCCTGAAAGTGAGCAAGTGCAGCAGAAGTTGCAGGAAGGGGAAGTTGATGCTGATGGTGAAG AGGAGGAGGATACTGAAACTATGATGAAGTCATCAACACCCCACATGTTCTGCAAGACTCTCACTGCATCTGATACTAGT ACTCATGGTGGATTCTCTGTGCCTCGTCGAGCAGCGGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTC ACAAGAGCTTGTGGCAAAGGATCTGCATGGCCGGGAATGGAAGTTCCGTCATATTTACCGGGGGCAGCCACGGAGACATT TGTTAACAACCGGATGGAGTGGATTTGTGAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAA GATGGAGAACTGAGATTGGGAATTCGTAGGGCAGCTCAATTGAATAATGGGTGTACCTTTTCTGCTCTCCCGGGCCAGCA ATTGAATCATAGCAGTCTTACTGATGTGTTTAATGCTTTATCTACAAGAAGTGCCTTCAGCGTTCACTACAATCCAAGGG CCAGCTCATCTGAGTTCATCGTACCTATCCACAAGTTCTTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTC AGAATGCGTTTTGAAACCGACGATGCTGCAGAGAGAAGATGTGCAGGATTAATTGTTGGAATTACTGATGTGGATCCTGT TAGATGGCCTGGATCAAAATGGAAATGCCTACTGGTAAGGTGGGATGACTTAGAAGCCACAAGAAATAATAGGGTTTCCC CATGGGAGATTGAGCCATCTGGTTCTGCTTCCATCCCCAATAACTTGATGGCAGCTAGTTTGAAGAGGACCAGGATTGGA TTGCCTTCAACACAGCTAGAATTTCCAGTTCCCAATGGGATGGGAGCATCAGACTTTGGGGAATCACTAAGGTTCCAGAA GGTCTTGCAAGGTCAAGAAATTTCGGGCGTTGATACTACTTTTGATGGTATTAATGCGCCGAGTCACCAATCGTATGAAT TAAGGAGATGTTATCCTGGTTCAAACTACCCTGGGATTTCATCAACAGGAAGCAGCATCAGAATCCCTCAAATGAGTTCT GATGTTTCCTACAACAGCATAGGCTTTAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAG CCAACCATATGGAGGAGCCTCTGGTTATGAGGCTTGTGGAAATGGTGGCTTTGGAGTTTTTGATGGTTACCAGGTGCTGA GATCCAGAAATGGATGGTCAACCCATATGAACAACCATCCTTCACATTTGCATCAATCTGTTCCAGCCGGGCAAGTTTCA TCTCCTTCATCTGTGTTAACGTTTCAGCAATCAATCAATCAAGGTGTGAACTTGGAGACCAATAACAAAACCAATCAGGT GATGGAGGGTAGAGTCCACCACCAAGGCTTATATCCTTCAACAATGAAAGGTGGAACGTTTGTATCAACCCCCTCTTGTG AGCCTAGTTTCCGCCGGCAAGCTCAGGAAGATGCTAATTCTTTGGGTTTTATAAATTTGCATAATCAGTTGGATAGTTCA CACTCACATGATCCTATTTCACTACTGAGAGGCCCTCAAGAGGTGGTTTCCTCATGTAAAAGTAGCTGCAGAGTCTTTGG TTTTTCATTAACTGAGGGTGCTCGCAGTGCAAATGAGGAGGCTGACCCATCTACAGTCACTTGTCAATTAAATCCTGGAA CTTCTTTTATCAGACACGTCGAAGATGATTTCCGTCCAAGGCATTCGCTTCGGAGCAAGGCAGTTGGAAAATATTGTAGC AAAGAAGTGCTGCAGTATTGA
Protein sequence (LotjaGi4g1v0062700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLIDLNTAEDDETPSSGGSSSTSATSMSITTATPSASSVCLELWHACAGPMICLPKKGSVVVYFPQGHLELVQDLQLL LPNIPPHVFCRVVDVKLHAEEGSDEVYCQVLLVPESEQVQQKLQEGEVDADGEEEEDTETMMKSSTPHMFCKTLTASDTS THGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSGFVNKKKLVSGDAVLFLRGE DGELRLGIRRAAQLNNGCTFSALPGQQLNHSSLTDVFNALSTRSAFSVHYNPRASSSEFIVPIHKFLKSLDYSYSAGMRF RMRFETDDAAERRCAGLIVGITDVDPVRWPGSKWKCLLVRWDDLEATRNNRVSPWEIEPSGSASIPNNLMAASLKRTRIG LPSTQLEFPVPNGMGASDFGESLRFQKVLQGQEISGVDTTFDGINAPSHQSYELRRCYPGSNYPGISSTGSSIRIPQMSS DVSYNSIGFSESFRFQKVLQGQEILPSQPYGGASGYEACGNGGFGVFDGYQVLRSRNGWSTHMNNHPSHLHQSVPAGQVS SPSSVLTFQQSINQGVNLETNNKTNQVMEGRVHHQGLYPSTMKGGTFVSTPSCEPSFRRQAQEDANSLGFINLHNQLDSS HSHDPISLLRGPQEVVSSCKSSCRVFGFSLTEGARSANEEADPSTVTCQLNPGTSFIRHVEDDFRPRHSLRSKAVGKYCS KEVLQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 11 | 30 | 20 | - | – | |
| PANTHER | 35 | 678 | 644 | 0.0 | – | |
| PANTHER | 35 | 678 | 644 | 0.0 | – | |
| Coils | 116 | 136 | 21 | - | – | |
| MobiDBLite | 124 | 145 | 22 | - | – | |
| SUPERFAMILY | 142 | 257 | 116 | 2.09E-43 | ||
| Gene3D | 147 | 252 | 106 | 1.2E-45 | ||
| CDD | 148 | 250 | 103 | 1.70011E-24 | ||
| Pfam | 150 | 251 | 102 | 6.8E-24 | ||
| SMART | 150 | 252 | 103 | 3.6E-25 | ||
| ProSiteProfiles | 150 | 252 | 103 | 14.015 | ||
| Pfam | 277 | 357 | 81 | 6.8E-33 | ||
| Gene3D | 313 | 386 | 74 | 2.3E-32 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi4g1v0062700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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