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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0064000 |
| Transcript ID | LotjaGi4g1v0064000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT3G23770.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q06915|EA6_ARATH Probable glucan endo-1,3-beta-glucosidase A6; TrEMBL-Plants: tr|A0A1J7H462|A0A1J7H462_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0064000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8012349..8013923) extracted from Lotus japonicus Gifu genome v1.2.
GGTTCTCTGCTGGCTACATTTCTCATCTGTTTACTTTCATTATCAAGTAAGTCAGAAATATACACATTCCTTTTTCTGCT ATGTATCTTATTTTATAAACTATGTAACATCATCAATTTCTCCAATTCCACAGGAACAAAAGCCTCAAGCAATATTGGTG TGAACTATGGCCAACTTGGGAACAATCTACCCTCTCCATCTAAGTCCATTGAGTTTCTAACAACAATGAACGCTAGCCTT GTGAAGCTCTATGATGCAAACCCTGAGATATTAAACCTTTTATCAACAACAAAGCTAGAAGTCTCAATTATGGTCCCAAA CCATGAAATCTCAGACATTGCTGCCAGTCAAAACATAGCAGATGAGTGGGTGAGGAACAATGTCCTCCCTCACTACCCCA AAACCATGATCCGCTACCTTCTTGTCGGCAATGAAGTGCTGAGCTACAATTCTGAACAAGGCCACAAAATGTGGCGTGAT CTTGTCCCAGCAATGATAAGCATCCAAAGATCTCTCGAAGCTCAGAATATCAAGGACATCAAAATTGGCACCCCATTAGC CATGGATGTCATGCAATCAACTTTCCCACCTTCAAGTGGGCGATTCCGACCTGACATAATAGACAGTGTGATGGTACCAA TGCTCAAGTTCCTGGACAGAACCAAGTCGTTTTTCTTTATTGATGCATACCCGTATTTCCCATGGTCTCAGAACCCCTAC AACATCAGCCTCGACTTCGCTCTGTTCAGGGGAAATTTCAGATTGCGTGACACTAGTAGCGGCTTGGTCTACACCAATTT GTTGGACCAAATGCTTGACTCCATCATCTTCGCCATGTCTAAACTCGGGTACCCCAACATCCAGCTCGTGATTGCTGAAA CCGGATGGCCTAACTCAGGTGACATAGAAGAACCTGGTGCCAACATATACAATGCAGCTACATACAATAGAAACCTCATC CAAAGAATGACAACAAAACCACCCATGGGTACCCCAGCTAGACCTGGGGTTGTAATTCCGACCTTCATCTTCTCACTGTT TGACGAAAACCAAAAGCCAGGACCGGGAACAGAACGACACTGGGGCTTGTTGCACCCGGACGGAATGCCAATGTATGAAA TTGACTTAACAGGAAAGCGATTGTTCACCGACTTTGCATCGTTACCAGCTCCAAAGAACAACGAACCATACAAAGGGAAG GTCTGGTGTGTGGGGGCAAAGGAAGCAAACCTAATGGAATTGGCAGCAGCTTTGTCCAATGCCTGCAATGAAGGGAACAT AGCTTGTGATGCTCTTGCCCCAGGGAAGGAGTGCCATGAGCCAGCTTCAATTACTGACCACGCAAGCTACGTTTTTAGCT CTTACTGGTCCAGGTTCAGAAGTGAAGGTGCAAGTTGCTATTTCAATGGCCTTGCGAAACAGACAACCACAGATCCCAGT AAGTTTCTTGATTTTTCATTCCTATACCAATCATTTCATATCCTTCCAATGTCACATTGTAACTTTGATAACCAATAATC AATGATGTTTTTGAAGCAGGTCAATCTTCTTGCAAGTTCCCAAGTGTAACTTTCT
CDS sequence (LotjaGi4g1v0064000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCTAGCCTTGTGAAGCTCTATGATGCAAACCCTGAGATATTAAACCTTTTATCAACAACAAAGCTAGAAGTCTC AATTATGGTCCCAAACCATGAAATCTCAGACATTGCTGCCAGTCAAAACATAGCAGATGAGTGGGTGAGGAACAATGTCC TCCCTCACTACCCCAAAACCATGATCCGCTACCTTCTTGTCGGCAATGAAGTGCTGAGCTACAATTCTGAACAAGGCCAC AAAATGTGGCGTGATCTTGTCCCAGCAATGATAAGCATCCAAAGATCTCTCGAAGCTCAGAATATCAAGGACATCAAAAT TGGCACCCCATTAGCCATGGATGTCATGCAATCAACTTTCCCACCTTCAAGTGGGCGATTCCGACCTGACATAATAGACA GTGTGATGGTACCAATGCTCAAGTTCCTGGACAGAACCAAGTCGTTTTTCTTTATTGATGCATACCCGTATTTCCCATGG TCTCAGAACCCCTACAACATCAGCCTCGACTTCGCTCTGTTCAGGGGAAATTTCAGATTGCGTGACACTAGTAGCGGCTT GGTCTACACCAATTTGTTGGACCAAATGCTTGACTCCATCATCTTCGCCATGTCTAAACTCGGGTACCCCAACATCCAGC TCGTGATTGCTGAAACCGGATGGCCTAACTCAGGTGACATAGAAGAACCTGGTGCCAACATATACAATGCAGCTACATAC AATAGAAACCTCATCCAAAGAATGACAACAAAACCACCCATGGGTACCCCAGCTAGACCTGGGGTTGTAATTCCGACCTT CATCTTCTCACTGTTTGACGAAAACCAAAAGCCAGGACCGGGAACAGAACGACACTGGGGCTTGTTGCACCCGGACGGAA TGCCAATGTATGAAATTGACTTAACAGGAAAGCGATTGTTCACCGACTTTGCATCGTTACCAGCTCCAAAGAACAACGAA CCATACAAAGGGAAGGTCTGGTGTGTGGGGGCAAAGGAAGCAAACCTAATGGAATTGGCAGCAGCTTTGTCCAATGCCTG CAATGAAGGGAACATAGCTTGTGATGCTCTTGCCCCAGGGAAGGAGTGCCATGAGCCAGCTTCAATTACTGACCACGCAA GCTACGTTTTTAGCTCTTACTGGTCCAGGTTCAGAAGTGAAGGTGCAAGTTGCTATTTCAATGGCCTTGCGAAACAGACA ACCACAGATCCCAGTAAGTTTCTTGATTTTTCATTCCTATACCAATCATTTCATATCCTTCCAATGTCACATTGTAACTT TGATAACCAATAA
Protein sequence (LotjaGi4g1v0064000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNASLVKLYDANPEILNLLSTTKLEVSIMVPNHEISDIAASQNIADEWVRNNVLPHYPKTMIRYLLVGNEVLSYNSEQGH KMWRDLVPAMISIQRSLEAQNIKDIKIGTPLAMDVMQSTFPPSSGRFRPDIIDSVMVPMLKFLDRTKSFFFIDAYPYFPW SQNPYNISLDFALFRGNFRLRDTSSGLVYTNLLDQMLDSIIFAMSKLGYPNIQLVIAETGWPNSGDIEEPGANIYNAATY NRNLIQRMTTKPPMGTPARPGVVIPTFIFSLFDENQKPGPGTERHWGLLHPDGMPMYEIDLTGKRLFTDFASLPAPKNNE PYKGKVWCVGAKEANLMELAAALSNACNEGNIACDALAPGKECHEPASITDHASYVFSSYWSRFRSEGASCYFNGLAKQT TTDPSKFLDFSFLYQSFHILPMSHCNFDNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 7.6E-179 | – | |
| Gene3D | 1 | 308 | 308 | 2.5E-107 | – | |
| PANTHER | 1 | 405 | 405 | 7.6E-179 | – | |
| Pfam | 2 | 300 | 299 | 4.0E-95 | ||
| SUPERFAMILY | 2 | 300 | 299 | 4.92E-78 | ||
| ProSitePatterns | 212 | 225 | 14 | - | ||
| SMART | 326 | 427 | 102 | 8.3E-26 | ||
| Pfam | 327 | 397 | 71 | 4.9E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0064000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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