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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0064600 |
| Transcript ID | LotjaGi4g1v0064600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wuschel homeobox protein; TAIR: AT5G45980.1 WUSCHEL related homeobox 8; Swiss-Prot: sp|Q6X7J5|WOX8_ARATH WUSCHEL-related homeobox 8; TrEMBL-Plants: tr|I1M048|I1M048_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0064600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8085013..8088796) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATATCCCTCGAGTCAATCCAAAACCCCTCCTCACATTGCTTTGCCCAAAATAACCTGAGGAACTTGCAATTACCA CCACCAATGCTTTTCCAATCAAACACAACAACACACTCCTTCTTGACTTGACTTTGCAACCTCCAACCTTTATTTATTCC TACAACGACCTCTATTCCCTTGCTCAGAATAATCCAACACTTGTTTCTTCTCACTCTCTTCACCCTCCCAATGAGACAAC ACTGCTAGCAAACCCAGAGGCAGCATGCAGCAACAACAAAAATTCCCCTTTCTCTCTCCCTCTTCCCCTATTTAAAAACA CACAGAAAAAAATATCATTTTCTTCACTATGCTAAATCCAAATATAGTGCAAGCAACAAAAGGTAGACATGGTAGAAATA TATGGTACTTTTTTATTTGTTTCTCATTTCCTTTATATATATATATATGACTGACCATTGATTCATCCATTTTTGTTTAG TTTAATTTACATATTTAATTATTGATTGTTCTCTCTCATTTTAATTATTAATTAGTGTTGAACTCTACATGATATGATCA TGCCTGTTCGTTTAATTAGGAGATGTTAAATTTTCATTGGAATATATAGGGGTGATGACTGACACAGCCACACAAAAGGG TAGTTGAAGGGGCTAATATTGAAGAGGAGTTCACTTCAGTTCAGACCATAAAGCAAGAGTGGCAGCAGAAAGTCTAGCTG TTTCTCTGATTGTTTTTCTCTTTTGAAATTGGTACCACCTTCATAGTTCAATTTCTCCCATCACCATCAATATCAATATG GCTGCCTCCAACAAAAGCTGGCCAAGCATGTTCAAGTCCAAGCGCAACCCCAACCACCAATGGCACCATGACATCAATTC CTCTCTCTTGTCCACCGGTTTCCAAAGAACCCCTTATGCCTCAGGTTTGTAAACATCCAAAATATTACCGTGAATATTTT CTTAGTAATGATTCGTTGGTAGTTCACTTTCTTTCTCATCTTATTATCACACACTTTTTCCTATTTCTATGTATTTTCTA ACCATCACATCAAATTACTTATTTTCTCTTTCTCTTCTCACTTAACTCAAATGTAAAGGGAAAAGAATTGTGAACAAAAG ATAGTTTTTTTCCTGGCGATCACCATGAATATCAAAACCTTTCAACTGTCTAACTCCAATAGTCAGTTACCTTGACCATT ATTTTTACACAAATATCATAGTCCTTATAGTTAATATCTTTCACATTAATTAATGAATTATATTTTGCAAATTTTATATC TTTAATTTGATTTTATTATCAATATCATTTTTCACTTTTTTTTCACATCACAGTACTCATTAGTCATTTCATTTTAATGT AATCCTATGTTTCTATGGGAGTGAGGTAAAATTGAGGAATTTCGATCCTCTGCCGCAGTTTCTACAGTCTTTGCAGCAGT AAAATGATAAATATATACAACTTTTGACGAATTCAACATTTTACAAATAAATCTAAACCATTTATTACAAAGAATCAAGG TTCAAGAATTTGTGGTATAGCAGAAAATCCATGTTTGAAATGAATATATATAAATGTATTATTTTCATTTAACTTTTTCT TTTTCTTAATAGGAGCAGGAGGAGGGGATGAGAGAACTCCAGAACCAAGGCCAAGATGGAACCCAAAACCAGAGCAAATC TGCATTCTGGAAGCCATCTTCAACTCTGGCATGGTTAACCCTCCAAGGGATGAAATAAGAAAGATCAGAATGCAGCTGCA GGAGTATGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGTAAATCCAGAAGCAAACACAAACTCCGCA ACCAACAGAATTCAAAGAAAAACAACAACAACCAAGAACCACAGAAAATTAACCAAACTGTGCCTAATTCATCATCTTCT TCATCATCTGAGAAATCCACTCCAAAGGAAGTAACAGTAACACCCTCTGTGGGATTCTTCTCAAACGTCATTGATGTGGT GCCTAATTCACCCACACCCTCTGTGAACCAGACTCTTTTTCAAACCAATTTTCAGCTCCCACCAGTTGCTGATCCTTTCT CCTTTGCTATGAACCAAGAAGTAGTGGTTCATAATGTCATGGAAACACAAGGATTTCACTTCACTGAGCTCTCAAACATA ATCCAACCTCCTCCATCTCAATATGAACAGAATCTTGGTCAGTGGCTTACTACTACTAATAACATCATGAGCTTTGAAAC CACAAAGAAAGACCAAGACAACTTCATGACCATGATGCACCAACCACAACACAACTTTTCTCTCACTCCAGCTCCAACTT TTGCTCCTCCTAGCACTAACACACTTGTTAGTGTTCCATCCCCCATCACTCAGCTTCAAGGTAATCAATCAATCAGTTCC ACCACACACAAAAGATTTCATAAAATTTTAGCTCTGAAGTTGGATATATAGTTTAAAGGGTTAATTCTCTAATTGGTCCC TGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCGTAAAATCTAAGTCCTCGCGTTTGAAAAAATGTGGAAATTAGTCC CTCTGGCGAGGACCTGCTACACACACTTTTTCAAACGCGAGGACTTAGATTTTACGGGAGGGACTAATTTTAGACGGCCA CACAACCACAGGGACCAATTAAAGGATTAACCCTAGTTTAAATATCATTTGATAAATTAAAATTATGGTGAACAAAAACA ACTTATATATCTTAACTTTTGTTTTTATCTACCATAATTTAATTTTAGTTTCATCTTAATTTTCTAAATTTTCTTTTGCA TATCCAAATATGTAGATAGTAGTACATGCTATGATATTGTAGGATAAGAGATAAAAAATGAAATTGATGAGATGTGACAG TTTTATTTGTACATCTAATTATGATTGTTGTGGTAAGTAAATACGGAAACATGTGTTTGCAGTCTTGGTTGTGTACTACA ACATGGACGAGTGCATGGCTTCACTTGTCTTAGCTAATAGTGTCTAGTCTAGTGATGTTTTTTTCGACTTGCACATGAGA AATAATGATTCGGTGTGTGTCAGGTGTAGTTGATGGTGGTGGTACCGCGAAATGCACAGTGTTCATTAACGACGTCGCAG TGGAGGTTGCTGTGGGGCCCATCAACGTGCCTGAAGCATTCGGGGAAGAAGCCATGCTCATCCACTCCTCCGGCATTCCT GTTCTCACCGACGAGTGGGGATTCACCCTCCACCCTCTTCAACATGGCGCATCTTATTATTTGGTATGTGTTACATTAGC GACGAGTGGGGATTGTACCCTCCACCCACTTTAACATGACGCATTTTATTATTTAGAGTGGGCGAAGGGTGAATTCACAC TCATCGGTGTTCTTATTGTATTTATTTTTTTAAGTTTTTTTTCCTTTTTTAACAATGTGAATATATATTTAAGAGAAGCG TTTTTTACAGTTTTATAGATGATTAAAAAAAAACAATGCATATATTTTGAAGTGATTGATTATTTTTAATAAAATTCATT TTCTTTATGCAGATTTAAGGAGGAGGTGAAGCTGAAGAGATGAAGCAGAATGAGAGAAACAATTAGATTCTCATATAATA TATAGTGTTCTCTCTATTAGTATACTCTTATGTTATGTCTCTTTATATATATACACAGGGTTACAGAAACCGTTTAAATT TCTAGCTAAGTTGTTGACAATATGGAAATCATGTTATTGGGGATGAGGATATATGTATTTTCAAGTACATAGTTTAAATA AAATTACTTTTAGCTTTTCTGGAT
CDS sequence (LotjaGi4g1v0064600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCTCCAACAAAAGCTGGCCAAGCATGTTCAAGTCCAAGCGCAACCCCAACCACCAATGGCACCATGACATCAA TTCCTCTCTCTTGTCCACCGGTTTCCAAAGAACCCCTTATGCCTCAGGAGCAGGAGGAGGGGATGAGAGAACTCCAGAAC CAAGGCCAAGATGGAACCCAAAACCAGAGCAAATCTGCATTCTGGAAGCCATCTTCAACTCTGGCATGGTTAACCCTCCA AGGGATGAAATAAGAAAGATCAGAATGCAGCTGCAGGAGTATGGTCAAGTTGGTGATGCCAATGTCTTCTACTGGTTCCA GAACCGTAAATCCAGAAGCAAACACAAACTCCGCAACCAACAGAATTCAAAGAAAAACAACAACAACCAAGAACCACAGA AAATTAACCAAACTGTGCCTAATTCATCATCTTCTTCATCATCTGAGAAATCCACTCCAAAGGAAGTAACAGTAACACCC TCTGTGGGATTCTTCTCAAACGTCATTGATGTGGTGCCTAATTCACCCACACCCTCTGTGAACCAGACTCTTTTTCAAAC CAATTTTCAGCTCCCACCAGTTGCTGATCCTTTCTCCTTTGCTATGAACCAAGAAGTAGTGGTTCATAATGTCATGGAAA CACAAGGATTTCACTTCACTGAGCTCTCAAACATAATCCAACCTCCTCCATCTCAATATGAACAGAATCTTGGTCAGTGG CTTACTACTACTAATAACATCATGAGCTTTGAAACCACAAAGAAAGACCAAGACAACTTCATGACCATGATGCACCAACC ACAACACAACTTTTCTCTCACTCCAGCTCCAACTTTTGCTCCTCCTAGCACTAACACACTTGTTAGTGTTCCATCCCCCA TCACTCAGCTTCAAGGTGTAGTTGATGGTGGTGGTACCGCGAAATGCACAGTGTTCATTAACGACGTCGCAGTGGAGGTT GCTGTGGGGCCCATCAACGTGCCTGAAGCATTCGGGGAAGAAGCCATGCTCATCCACTCCTCCGGCATTCCTGTTCTCAC CGACGAGTGGGGATTCACCCTCCACCCTCTTCAACATGGCGCATCTTATTATTTGATTTAA
Protein sequence (LotjaGi4g1v0064600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASNKSWPSMFKSKRNPNHQWHHDINSSLLSTGFQRTPYASGAGGGDERTPEPRPRWNPKPEQICILEAIFNSGMVNPP RDEIRKIRMQLQEYGQVGDANVFYWFQNRKSRSKHKLRNQQNSKKNNNNQEPQKINQTVPNSSSSSSSEKSTPKEVTVTP SVGFFSNVIDVVPNSPTPSVNQTLFQTNFQLPPVADPFSFAMNQEVVVHNVMETQGFHFTELSNIIQPPPSQYEQNLGQW LTTTNNIMSFETTKKDQDNFMTMMHQPQHNFSLTPAPTFAPPSTNTLVSVPSPITQLQGVVDGGGTAKCTVFINDVAVEV AVGPINVPEAFGEEAMLIHSSGIPVLTDEWGFTLHPLQHGASYYLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 366 | 366 | 1.1E-133 | – | |
| PANTHER | 1 | 366 | 366 | 1.1E-133 | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 60 | 60 | - | – | |
| MobiDBLite | 23 | 39 | 17 | - | – | |
| SUPERFAMILY | 50 | 119 | 70 | 2.69E-12 | ||
| ProSiteProfiles | 51 | 116 | 66 | 10.09 | ||
| SMART | 53 | 120 | 68 | 3.5E-8 | ||
| Gene3D | 54 | 125 | 72 | 1.9E-8 | – | |
| CDD | 54 | 116 | 63 | 1.81462E-8 | ||
| Pfam | 55 | 115 | 61 | 5.2E-14 | ||
| MobiDBLite | 112 | 155 | 44 | - | – | |
| MobiDBLite | 122 | 155 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0064600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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