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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0066100 |
| Transcript ID | LotjaGi4g1v0066100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic-like protein; TAIR: AT4G18570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7C6B9|V7C6B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0066100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8308760..8313031) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATCTCTCTTGTCTCCTTTCTTACAAACGACGTCGTTTCAGTCACCTCCCACTTTTACTTCCAAACTCCCATGAGA TTCAAAACACCACAACCCCAACCCTTCATCTAAACACAAAACGCCACAAACATGGTTGCCGGAAAAGTCAAAGTAGCAAT GGGGTTTAACAAGTCACCGGCGCCGGCGGCCAAGACTCCTCCGCCGCCAAAGAAGCATCCACCACCTCCTTCACCGTCAA CAACAACAACCTCCGCCAACAAATCCACCTCCAACAAATCATCATTCACGCGCTCATTCGGCGCGTACTTCCCTCGCTCC TCCGCTCAGGTGCAGCCGCGTCCACCGGACGTGACGGAGCTCCTCCGCATGGTGGAGGAGCTCCGAGAGAGCGAGTCTCG TTTGAAAACAGAGCTTCTCGAGCACAAGCTTCTGAAGGAGACCGCCGCCATTGTTCCTGTCCTGGAGAACGAGATCACAG CGAGGGAAAGTGAGATTGAGAGGAGCAAGAGGAAAGCGGAGGAGACAGAAGCAGAGAACGAGATTCTGAAGAAGGAGTTG CAGGAGTTGAAGCTCCGTTTGGAAGAGGAGAAGAGAGAGTACGAGAGAAAAACGAAGGCGTTGGAGGATGAGATAGCAGA GCTCAAGAAAACGACATCGTACAGTGGCACCACCACCAGAGCAGAGTCACTGTCACGTGACGAGCACGAGCAGTTTTCTT CATCACAGAGGTTCCATGAGGTTTTAGCGAGGTGCAATCGCGTGAAGAAAACGACGTCGGATTATGGAAGCGTGAGCCAG AAGCAGAACAACAACAATGAAGGTTCGGATTCGAGGAGGGAGAGTTTGGAATCTGAAAGGCCGCGTCACTCGCGGTGTAA CTCGGAGGAACTCGCTGAGTGTGCTGACTCAGTAGCTCTTGCCGTTAGCGTCAGATCTCGCGGTCCTCGAGTTCCTAACC CGCCGCCGAGACCTTCCTCTTCTACCTCGCCGGCGTCACCTTCGAGTGTTGTTTCCAGTAATGGCGAAACAGAGCAACCG CTTCCGCCGCAGGTGAATGTAGCTCCTCCACCGCCTCCGCCTCCCCCGAGGAAACTTGCTTCCAAAGCAGCAGCAGCAGC ACCTCCGCCTCCCCCGCCACCGCCTAGGGGGCTGAGGGCGGCTCCGTCGAAGGTGAGGAGAGTGCCGGAGGTGGTAGAGT TTTACCACTCGTTGATGCGGAGAGATTCGCAGTCGCGGAGGGAGTCGAGCTCCGGCGGCGGTGCGGAGGTGCCGGCGACG GCGAACGCGCGTGACATGATCGGCGAGATTGAGAACCGTTCAACTCACTTACTTGCGGTAAGTGCGTGTGATTTAATTTA CGGTTTTGCCACTGTCCCATTTATGTTAGGACCGCTGACATGTGTAGTCGCTTTAATTTGAAAATTGGATTTCTCGGTAG AGTAAGACAGTATTCTGATTTGATTTTTGCATGCCCAAAATCGTAATTTTGCTTCATAACTATGAGCACTTTATGATATC TAAGCCAAACAGAAAGGAAAAAAAAGATTCTCCAATTACTGAAACTCGGTCTTTTTATTAGTCAATCAAGTCAAAAGATA GTGGTTGATTTTAGGTGATTAGTATTATTATTACTGATTACTGATTAGAGGTCAATCTTATATTTTACATTTTTACTCCT AATCAATCATACCCTTAATTGACGCTAGTAGGAGTAAATTGAGGGTTTTGTTTTTTATTGTTTTCACTCATTTAGTAATT GTGTGTTTGGTTAATCAACAGGAGAATTGATTCTGGACAAATTTAATTTTACTAAAATTGTGTATAGTAAATATGAGTTA AGATGATGTAATTTATGTTTGGATACCTTTACGAAAAAAATGTAGGTTTTGTCCGGTAATGTTGTGAAGCTCAATTGTGA AATCGATGATTGAACTAATTGTTGTGTCACTTAGAATTGAACCATTGATTTTGGAACTGCTTTACAGATGCACCCAAATA TCATTTTAACCGGTTATAATTAATTTTAATCGACTAGAATTGATTCTATAGCATTATTTGTGGTTTCTAAAGGTGTTCAT AACTTTTGTTTACAGATAAAAACAGATGTAGAAACACAAGGAGACTTTATTAGATACTTGATCAAAGAAGTGGAAGGTGC AGCATTCACGGACATTGAAGATGTGGTGCCTTTTGTCAAATGGCTTGATGATGAGCTCTCCTATTTGGTACTTTTTTAAT GTTCATTTTGTTGTTTTTCTTCTATTTGCATCATTGAAATTTTAACATATGTTATCTGCTTTTGTTGTTTCAGGTTGATG AGAGGGCAGTGCTCAAACACTTTGATTGGCCGGAGCAAAAGGCCGACGCTCTGCGCGAGGCTGCGTTTGCGTATTGTGAT CTGAAGAAGCTGGAATCGGAGGCTTCCTCATTCCGCGACGACCCTAGGCAGCTGTGTGGCCCAGCTCTGAAGAAGATGCA GACTCTCTTTGAGAAGTATGTGTGATTTTTTGAACTCTCCTATCTTGCCCAATATCATAACAGGATTCATTTTCTATTAC TAGTTACAACTGATAGGTTGGGAAAAAATGAAAAAACTTTCATTAGCAACTTTAATTCGGGACCATCTAATTTAACTCAA CAACTTTACAACTAATAAAGATGACATAACAGGATGAATGAAAGCTACTCCATATGCCTAACTTATTCAATGTGAATTGA ATGTTCATGTGCCCAAAGTTGCTGACTCTCATTTTATGATTTTTTTTAAATGGTTATTACAGATTAGAACATGGGCTGTA CAATATCTCAAGAATGAGAGAGTCGTCCACAAAGAAATACAAAGTCTTCCATATACCTGTAGATTGGATGCTTGATAATG GTTATGTGAACCAGGTAATTTTCATGAAAGATAAATGTTAGATTTACATACATGCTTCAGGCATAGTTTCAGTATAGACT ATAATTTATACGCATGACCTATAATTTTCAGTTTTATTGAATAATGGGCTAGAGTTTTTTATTGGTTTATGTGGTATAGG CCCACCAATTAATATCAACCTTCTAATGATCCAACTCAAATATCTGTAAAATTGTTGAAAGTTTAAACTCTAGCTTTGGT AAAGTGTACTTCATGACATATTTTATAAGTTGTTGACAGCAAAATGACAAAACAGTTGTTATCTTTTTTGCTGATGGACT TGGATTTCTGTTTGCATGCGCACATGGGACTCCACATCTCCCCAATTCATCTGCTTGTCTGTTTCATCTTTTTTATAGAA GTTCTCTTTGGCTCTTTACACACTCAGAACTTAGAAGTGAACTAGATTTTATTGTTTTTATCTAAAGACTCTTTATGTTT AAAATAATTATATCAGTAATAGTAAAAAGAAAAACACATGGTTAAATATACATGAATATACAGTTGTAAAAATTTACTAC ATGAAAATACAAGTCGTACGCACTCTGCAATTCATTTCACATGGCATTATGATAGCACATTAAATTGCACTTACTAAATT TTATTGCTTCAAAGTTGATGAGGTGAATTAAAACTCAAATGTTGGTTTGCTCATTTGATTTATTATATCTGCAACGTTAA ATTGTGGCAGATCAAGCTGGCATCAGTAAAATTGGCCATGAAGTATATGAAGAGAGTCTCTGCTGAGCTTGAGACTGTTG GTGGTGGACCTGAAGAAGAAGAGCTCATTGTCCAAGGAGTTAAATTTGCATTCCGAGTACATCAGGTAAAAGAAAATTCA GACATGTTTGTACAAAGTCAAAACTTGTGACCTATTCAGCTATTCTAATTTCTTGAAGGCCATATGGAGTAATAAGATGT TATGTTTGTCCTGCAGTTTGCCAGCGGCTTTGATGTCGAAACAATGAGGGCATTCCAAGAATTGAGAGATAAGGCGAATT CATGCCATGTCCAATGCCACAGCCACCAACAAAAATTCTTTTGCAGGTCTACAACATGCTAATACTGGAGCAAACTCAGC TTCAGAGAATTAGTATCATTTTCCACTGTAATTTGTGAATAGAATGGCAATAGTAGCCATCCTTTAAGTAGAACACATTT ATAATTTTATGATCCACCTATTCTTTTGTTACTTGGAAACAAGACAACATTAAAATTTGTTACCACTCTGGCACATGTTG CTCCTGCAAATTCTCTGAAAATCCATTTCTCTAATCACTCATTAATTACTGAAGCAAGACACTAACCCAAATTTGGTTCC ACTTTGGCACATGTTGCTGTTGCGAATTCTCT
CDS sequence (LotjaGi4g1v0066100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCCGGAAAAGTCAAAGTAGCAATGGGGTTTAACAAGTCACCGGCGCCGGCGGCCAAGACTCCTCCGCCGCCAAA GAAGCATCCACCACCTCCTTCACCGTCAACAACAACAACCTCCGCCAACAAATCCACCTCCAACAAATCATCATTCACGC GCTCATTCGGCGCGTACTTCCCTCGCTCCTCCGCTCAGGTGCAGCCGCGTCCACCGGACGTGACGGAGCTCCTCCGCATG GTGGAGGAGCTCCGAGAGAGCGAGTCTCGTTTGAAAACAGAGCTTCTCGAGCACAAGCTTCTGAAGGAGACCGCCGCCAT TGTTCCTGTCCTGGAGAACGAGATCACAGCGAGGGAAAGTGAGATTGAGAGGAGCAAGAGGAAAGCGGAGGAGACAGAAG CAGAGAACGAGATTCTGAAGAAGGAGTTGCAGGAGTTGAAGCTCCGTTTGGAAGAGGAGAAGAGAGAGTACGAGAGAAAA ACGAAGGCGTTGGAGGATGAGATAGCAGAGCTCAAGAAAACGACATCGTACAGTGGCACCACCACCAGAGCAGAGTCACT GTCACGTGACGAGCACGAGCAGTTTTCTTCATCACAGAGGTTCCATGAGGTTTTAGCGAGGTGCAATCGCGTGAAGAAAA CGACGTCGGATTATGGAAGCGTGAGCCAGAAGCAGAACAACAACAATGAAGGTTCGGATTCGAGGAGGGAGAGTTTGGAA TCTGAAAGGCCGCGTCACTCGCGGTGTAACTCGGAGGAACTCGCTGAGTGTGCTGACTCAGTAGCTCTTGCCGTTAGCGT CAGATCTCGCGGTCCTCGAGTTCCTAACCCGCCGCCGAGACCTTCCTCTTCTACCTCGCCGGCGTCACCTTCGAGTGTTG TTTCCAGTAATGGCGAAACAGAGCAACCGCTTCCGCCGCAGGTGAATGTAGCTCCTCCACCGCCTCCGCCTCCCCCGAGG AAACTTGCTTCCAAAGCAGCAGCAGCAGCACCTCCGCCTCCCCCGCCACCGCCTAGGGGGCTGAGGGCGGCTCCGTCGAA GGTGAGGAGAGTGCCGGAGGTGGTAGAGTTTTACCACTCGTTGATGCGGAGAGATTCGCAGTCGCGGAGGGAGTCGAGCT CCGGCGGCGGTGCGGAGGTGCCGGCGACGGCGAACGCGCGTGACATGATCGGCGAGATTGAGAACCGTTCAACTCACTTA CTTGCGATAAAAACAGATGTAGAAACACAAGGAGACTTTATTAGATACTTGATCAAAGAAGTGGAAGGTGCAGCATTCAC GGACATTGAAGATGTGGTGCCTTTTGTCAAATGGCTTGATGATGAGCTCTCCTATTTGGTTGATGAGAGGGCAGTGCTCA AACACTTTGATTGGCCGGAGCAAAAGGCCGACGCTCTGCGCGAGGCTGCGTTTGCGTATTGTGATCTGAAGAAGCTGGAA TCGGAGGCTTCCTCATTCCGCGACGACCCTAGGCAGCTGTGTGGCCCAGCTCTGAAGAAGATGCAGACTCTCTTTGAGAA ATTAGAACATGGGCTGTACAATATCTCAAGAATGAGAGAGTCGTCCACAAAGAAATACAAAGTCTTCCATATACCTGTAG ATTGGATGCTTGATAATGGTTATGTGAACCAGATCAAGCTGGCATCAGTAAAATTGGCCATGAAGTATATGAAGAGAGTC TCTGCTGAGCTTGAGACTGTTGGTGGTGGACCTGAAGAAGAAGAGCTCATTGTCCAAGGAGTTAAATTTGCATTCCGAGT ACATCAGTTTGCCAGCGGCTTTGATGTCGAAACAATGAGGGCATTCCAAGAATTGAGAGATAAGGCGAATTCATGCCATG TCCAATGCCACAGCCACCAACAAAAATTCTTTTGCAGGTCTACAACATGCTAA
Protein sequence (LotjaGi4g1v0066100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAGKVKVAMGFNKSPAPAAKTPPPPKKHPPPPSPSTTTTSANKSTSNKSSFTRSFGAYFPRSSAQVQPRPPDVTELLRM VEELRESESRLKTELLEHKLLKETAAIVPVLENEITARESEIERSKRKAEETEAENEILKKELQELKLRLEEEKREYERK TKALEDEIAELKKTTSYSGTTTRAESLSRDEHEQFSSSQRFHEVLARCNRVKKTTSDYGSVSQKQNNNNEGSDSRRESLE SERPRHSRCNSEELAECADSVALAVSVRSRGPRVPNPPPRPSSSTSPASPSSVVSSNGETEQPLPPQVNVAPPPPPPPPR KLASKAAAAAPPPPPPPPRGLRAAPSKVRRVPEVVEFYHSLMRRDSQSRRESSSGGGAEVPATANARDMIGEIENRSTHL LAIKTDVETQGDFIRYLIKEVEGAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFAYCDLKKLE SEASSFRDDPRQLCGPALKKMQTLFEKLEHGLYNISRMRESSTKKYKVFHIPVDWMLDNGYVNQIKLASVKLAMKYMKRV SAELETVGGGPEEEELIVQGVKFAFRVHQFASGFDVETMRAFQELRDKANSCHVQCHSHQQKFFCRSTTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 627 | 627 | 1.3E-285 | ||
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 72 | 72 | - | – | |
| PANTHER | 1 | 627 | 627 | 1.3E-285 | – | |
| MobiDBLite | 18 | 37 | 20 | - | – | |
| MobiDBLite | 38 | 62 | 25 | - | – | |
| Coils | 74 | 94 | 21 | - | – | |
| Coils | 115 | 174 | 60 | - | – | |
| MobiDBLite | 168 | 348 | 181 | - | – | |
| MobiDBLite | 213 | 229 | 17 | - | – | |
| MobiDBLite | 230 | 253 | 24 | - | – | |
| MobiDBLite | 286 | 304 | 19 | - | – | |
| MobiDBLite | 306 | 342 | 37 | - | – | |
| MobiDBLite | 362 | 386 | 25 | - | – | |
| SUPERFAMILY | 443 | 464 | 22 | 5.49E-5 | – | |
| Coils | 462 | 482 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0066100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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