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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0066600 |
| Transcript ID | LotjaGi4g1v0066600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT3G15010.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LKA4|UBA2C_ARATH UBP1-associated protein 2C; TrEMBL-Plants: tr|G7JPR0|G7JPR0_MEDTR Heterogeneous nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0066600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:8332272..8336983) extracted from Lotus japonicus Gifu genome v1.2.
TCGTGTTACTTCAAGGACCAAAAGTGGAATTAATCCAAAACTAAAACTAAGTACAAGTAGAGACTAGTTTGATAGATTGG TCTGGTTCTGATTAAAACCTACTTGCCTTGGTTTTTCACTATTCCAAGCCCTAATTCCCAAATCCTCTCAGAACCTCCAT CGCCATGGACTTCCCCAAGAAGCGCAAAACGGAGGAGAACGGCGACGCCGTTTCTCCACTTCCACCAACCGACGCCGTCG CATCCCCAACCATCACCCTCGCCGCAGAAGATATCCGCAAGATCCTCCAACCCTTCTCCCAGGACCAACTCCTGGAGCTT CTCCAATCCGCCTCCCTCCGTCACCCCGACGTACTCGACTCCATCCGCTCCGTCGCCGACCGCGACACCGCCGTCCGAAA ACTCTTCGTCCGCGGCCTCGCCTGCGAAACCACCACCGAGACGCTCCGCAGCGTCTTCTCTGCCTACGGCGACCTCGACG AAGCGATTGTCATCTTCGATAAATCCACCGGCAGGTCCAAGGGTTATGGCTTCGTCGTGTTCAAGCATATTGACGGCGCA ATTCTTGCTCTCAAGGACCCGAGCAAGAAGATCGACGGGAGGATGACGGTGACGCAGCTGGCGGCGGCTAGATCAGGTGG CTCCTCCGGTGATGTTTCCGCTCGTAAGGTTTTCGTCGGGAATGTTCCGTTTGAGATTCCATCGGAGAGGTTGTTGGATG AGTTTCTCAAGTTTGGTGAGGTTGAAGAGGGTCCGTTAGGGTTTGATAAAGCGAGTGGCAAGGCAAGAGGCTTCGCGTTC TTCGTGTATAAGACTGAGGAAGGTGCTAGAGCTTCGCTTGCGGAGCCTCTGAAGACAATTGATGGGCACCAAGTGATTTG CAAGTTGGCTGTGGATAACAAGAAGCCTAAGCCTGGTGGGGCACACAATGCTTCGGGGTTTCCGGTGGAGACGCCGCAGC CTTCTTCAATGCACGCTCCTGGCCCTAATACCATGATGCCGCCGCAGTACGGTGCTGGGAATCCTTATGGGCAGCCGTAT GGTAATCCTGTTCCATCTGGTGGTGGGTATGCGCCTGGAATTGGTGGTGGTGGTGGTGCCCCGCAGTATGGTGGGCCTGG GCCGGTGCCGGTTTCTGGTGCAAGGTTTCCTCCAGCTTCTGGCGGAGGATACCCAGATGGGTCGCAGTATGGTTACCCCT CGCAGCCCATGCCTATGCAAAGACCTCCTACTGGTGGAATGTACCAACCGCCTTATTATTGAGGTAACTTTTTGTGCTTG ATTTTTGAATGATGTTTTTTATTTGTGTATGCTTCTCTTAGCTTTGTTTGTTGGTTTTGTGTGGTTGTTGTCTGTTTCTT TCATTCAACCTCCTCCAAAAAGATGGTGTTTAGGTCTAAGTTATTTGTCTGATCATTTGCTCGAAATCTCAATCTTCTGT CATCCTTTTCATTGAAAGGCTTGCTTGATTGTTGATTAACTCCTTGTCCCAATCAACAAGACAACTACTCCTTGTTCATT ATGGATGTGAATTGAACAATTCCATAATGCTATTTCATGGATTAGGTTCACCAATTAACTCTAAATCACTTAATAGTTTG GTGTCAATTTTGTTTTGTCTTTCCTTACCCCTACCTACTGGTTTATCCCCCATCTAGTCTACCCTTCTCATTGTTGTCTT TTACACACGTCCAAACTTCCAGTGTCCTGTCAACTAGCAGTTGAAACTTGAATGTAGATGCTTTCAAAGCAAGTGAAGTT CGTTATGTGTTTGTTCATTACAAGGACCATCTTCCTTACTCTAGCATTTTGTAATGGTCCTTCCATCTTACCAATCTTGA TTTCTAAAATCCATTGGTGATGGTGATATTAAATGGTTTCAATATCTTGTAGAAATTATTTTGTTGTGTGGTCTTCCTGT TTAGTGGATTCTGTTTGAAGTTTATTTTTTTGTTGATTGTATTCAACTTTGAGTATTTGACAGATGATTGTGTTTTTCTA AATGTTAATATGCTTTGAGTTTTGAATAGGTGTTTTGTTCAGGATTGTGATGGCTTCTTGGGCGCTAATGCTTTAAATGG TTGTGCTGCTTTCGTTCATGCAGACAATGAAATCTATGGTTTTGGTTACATGGACTGCTGTGATTTGTTGCTGCTTCACT ACCTCTGCTTCTATGTGTTTTGGTTCCTTTTGTGATAGGTTTTGGTGAAAGCTTACATGACCTGTAGTTTTTGAATGTAG TACTCATGTGGAATTTTTGTAGAATTTTTATTTGAAGTTTTCTCCTACATTAGGATCCTAAGTTATTGAGTAAGTGCCAA GGTGGTTTATACTAAATTTGATGTGTCCAATTTGGTCTATGCCTCTATGTGCATATATGTACTCTATGTGGTTTTTGTGG TGACCTCTAATTATTTTTCAATGTTTTATCTTTTTACTTCAGTTCATTGCAAGTATTTGTTTGAATGATGGGCTCTTGTT AGTTGACTATTTCTGAAATATCCTTCTCATTTGGTTCTAAACTAATTCAGCATCAAGTCTTAAATGAGTAAGTTAGTTCA GTTAAGCTTTTAGCAACTTATTTGTATCTGCTAAAGATTGAGATCTGCAATTGGTTTGGCCCTGTAATTGGTGCTTGTGT TCACCTCTGGATATTGCCAAACTTGAGATTGCTTGCCTTTGTTTCTGTGGAAATCAAAGCTTAGACTTGATGCAGCAATT GCAAAGCCATATTTTTTATTCCCAAGTAAACCCTTATACGTAGGGCTTGGCTCATCTAAAGTGAGCATATGCTGTTTAGA GGATATTTACGAGGATAATCGTTAATTGGAAAATCAACGGTTTTGTTTGTGATGCAATCAGTGCACATTTAAAACAATTT ATGAAGTTATTGAAATATCAATTGTTGATTTTCTAATCCACGGTTATCCATGGCTATAATTCCACACTTTATGCTCTAAT GCACAGTACTCACTTTGGCTTAGTTAAATCCCAAATATGTATGTTGTGATGATGATTTTTAAAACTGCTGAAAAATCATA GGGACTGTGTTGTAATTTCCACTTCTCATGATTCTTAAATCCCAATTTAGCTTGTTATATATGTAATTTAGCTTGGCCAC GCCACTTTGAGTCGTTGTTAACTAGCCACTAATATAGCAAGTCAAGGATTCATTATGTATGTATCACACTGGTTGCACAT AAACTTTTAAGCTCCCTCCTTTCTCCATGTTCATGCCAACCCTCTGAAAGAAAAAGGAAAGCAAGGGAAAGAAGTTAACA TTTTTTTGTATCTGCTATGCTAAAATAGGATTTTTTATTGGTAGACATGCTGAAATAGGATATGAGCACAAAAGCTGAAC AGGACAAGAGTCTTTCATTTACTTCCATAAAATATGAAAACAAAAAAGAAACACATCTCGGTATACTTTTTGAAGTAGCA AGGGTTACTTTCCCGCTTTTAAACTTTTTTCGGCGGTAAACCAAACGGGCTCTAAATATGTTGCTTATGTGCCCGTCTTG CACTTTGCTACCCTTGAATATGTGGATCATGCTTTGCAATATGTTGGTGTTTAGGTCAAATATATTGTTGTTTGTTTGTT TCTACTGAACTGTTCTTCATTGTTTTTCTTATGATGGCTTGTCTATAAAACCTTGTGAATGTCCATACTTGCTGCTATTT CTAATGATTTTTGAGGTGGTTCTGTTGGTTTTCGAGTGGAAGTAGTTCATCTCATCCAACACATCCCATTGGTTATTTTG TATCATTCTCTATAGTCCTTTGAGGTTCAGGAATCTTGGACCTTGGAATGCCATTTTGGTCCCCAAATGTCCAGGGATGG AGCCAAGTTATTTTGTATCATTCTCTATAGTGGGACAATTGCTTTGTAATAATTTTATCGTGAAACTCGGATGCTACTCC TGAAAATTGTATGTCATAAATGGTTTGATATAATATGTTGAGCTTTATTTATAATTACGAGGTGACTCCTGCAATTATTT TGTGTGTGGTCCCTGTCGTTTCCAAAGAAATGGATGATACTGTTACGAATTTGAGCACCAAGCAAAATCTAGTTATTATT AATCACATGCTGATGCTCTGTGGCTCCCTTTGTAGTTGATTATTCACATCAGCGTGATTTAAACAGTTGGAGGAATAAAT ACTAGGACATGATGCATTGTATTTATTCGAAATTGTGTCAAGTGTTGAGGGTATCTTACACAAACCCGAGGAATCTCTTT TTTTGCTTTGTTAAATTGTGGGTAAAGTGATTTACTTGGAATTTGATACCATTCGTCCAAGTCATTTGGTGTCATATAGT GGGTGCCGTTTGGAGGTTTATATTCCTATCAAAGTTTGTTAGCTGTTACAAGTGGCCTCAATGTCTAATGGTGTTTTGCG TTAGTTTAAGTGGGATTCGATTATTTTTTTATAGATAAGCTATAATGAAATTAGGGTTAATGGTCAAATTATTCGCTGAG TTTGTAAGTAAGTTTAATTTTAGTCCTTCTGAGGAAAAGTGACGTTTAGTGGTGGTCATTTTTATAATTAGTGGTGGTCA TTTTTACAATTATTGGCGGTTTTTAATCGTCACTAAACGTCATTTTTTCTTAGAGAGACTAAAATCAAACTCGGTTATAA AATTATGGACTAATTTGACCATTAACCCATGAAATTATTATGGCTGATGGAAGAATTTTTTGTGGAGTGAGG
CDS sequence (LotjaGi4g1v0066600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTCCCCAAGAAGCGCAAAACGGAGGAGAACGGCGACGCCGTTTCTCCACTTCCACCAACCGACGCCGTCGCATC CCCAACCATCACCCTCGCCGCAGAAGATATCCGCAAGATCCTCCAACCCTTCTCCCAGGACCAACTCCTGGAGCTTCTCC AATCCGCCTCCCTCCGTCACCCCGACGTACTCGACTCCATCCGCTCCGTCGCCGACCGCGACACCGCCGTCCGAAAACTC TTCGTCCGCGGCCTCGCCTGCGAAACCACCACCGAGACGCTCCGCAGCGTCTTCTCTGCCTACGGCGACCTCGACGAAGC GATTGTCATCTTCGATAAATCCACCGGCAGGTCCAAGGGTTATGGCTTCGTCGTGTTCAAGCATATTGACGGCGCAATTC TTGCTCTCAAGGACCCGAGCAAGAAGATCGACGGGAGGATGACGGTGACGCAGCTGGCGGCGGCTAGATCAGGTGGCTCC TCCGGTGATGTTTCCGCTCGTAAGGTTTTCGTCGGGAATGTTCCGTTTGAGATTCCATCGGAGAGGTTGTTGGATGAGTT TCTCAAGTTTGGTGAGGTTGAAGAGGGTCCGTTAGGGTTTGATAAAGCGAGTGGCAAGGCAAGAGGCTTCGCGTTCTTCG TGTATAAGACTGAGGAAGGTGCTAGAGCTTCGCTTGCGGAGCCTCTGAAGACAATTGATGGGCACCAAGTGATTTGCAAG TTGGCTGTGGATAACAAGAAGCCTAAGCCTGGTGGGGCACACAATGCTTCGGGGTTTCCGGTGGAGACGCCGCAGCCTTC TTCAATGCACGCTCCTGGCCCTAATACCATGATGCCGCCGCAGTACGGTGCTGGGAATCCTTATGGGCAGCCGTATGGTA ATCCTGTTCCATCTGGTGGTGGGTATGCGCCTGGAATTGGTGGTGGTGGTGGTGCCCCGCAGTATGGTGGGCCTGGGCCG GTGCCGGTTTCTGGTGCAAGGTTTCCTCCAGCTTCTGGCGGAGGATACCCAGATGGGTCGCAGTATGGTTACCCCTCGCA GCCCATGCCTATGCAAAGACCTCCTACTGGTGGAATGTACCAACCGCCTTATTATTGA
Protein sequence (LotjaGi4g1v0066600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFPKKRKTEENGDAVSPLPPTDAVASPTITLAAEDIRKILQPFSQDQLLELLQSASLRHPDVLDSIRSVADRDTAVRKL FVRGLACETTTETLRSVFSAYGDLDEAIVIFDKSTGRSKGYGFVVFKHIDGAILALKDPSKKIDGRMTVTQLAAARSGGS SGDVSARKVFVGNVPFEIPSERLLDEFLKFGEVEEGPLGFDKASGKARGFAFFVYKTEEGARASLAEPLKTIDGHQVICK LAVDNKKPKPGGAHNASGFPVETPQPSSMHAPGPNTMMPPQYGAGNPYGQPYGNPVPSGGGYAPGIGGGGGAPQYGGPGP VPVSGARFPPASGGGYPDGSQYGYPSQPMPMQRPPTGGMYQPPYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 22 | 300 | 279 | 2.1E-141 | – | |
| PANTHER | 22 | 300 | 279 | 2.1E-141 | – | |
| Gene3D | 41 | 162 | 122 | 2.7E-19 | ||
| SUPERFAMILY | 69 | 157 | 89 | 1.17E-20 | ||
| CDD | 78 | 153 | 76 | 5.19429E-35 | – | |
| ProSiteProfiles | 78 | 157 | 80 | 14.931 | ||
| SMART | 79 | 151 | 73 | 1.6E-16 | ||
| Pfam | 80 | 146 | 67 | 3.0E-13 | ||
| Gene3D | 163 | 250 | 88 | 4.7E-15 | ||
| SUPERFAMILY | 164 | 259 | 96 | 4.57E-17 | ||
| ProSiteProfiles | 167 | 248 | 82 | 13.942 | ||
| SMART | 168 | 240 | 73 | 2.3E-12 | ||
| Pfam | 169 | 235 | 67 | 2.0E-8 | ||
| MobiDBLite | 248 | 274 | 27 | - | – | |
| MobiDBLite | 260 | 274 | 15 | - | – | |
| MobiDBLite | 299 | 365 | 67 | - | – | |
| MobiDBLite | 348 | 365 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0066600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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