Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0067600.1

Overview

Field Value
Gene ID LotjaGi4g1v0067600
Transcript ID LotjaGi4g1v0067600.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; TAIR: AT5G10460.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O32125|YUTF_BACSU Acid sugar phosphatase; TrEMBL-Plants: tr|A0A1J7GYN0|A0A1J7GYN0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0067600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8460682..8464377) extracted from Lotus japonicus Gifu genome v1.2.

CTCAAATAAAAATGAATAGTGTTACTCAATTGAGTAAGTGTCAAGACTTCAAAATTGATTAATGGAAGCACTATATGCAT AAGACAGAATGATTCCGAAATGCTCTGCTTCTCCCATCCACAGTCATCCACTTCAGTTCCAGCCCTTGACCGGTCTCCGG CAACTCGCCGAAACGCGTCGTTTCAAGGCACGATGCATTGATTGATTCTCACTTGTCATTCAACGATTCTCTACACCATC GATATGCTAATGCTCCTTCTCTTTACAGGTATGGCTTTTGGATCAATTTGGAGTTCTCCACGATGGAAAACAACCTTATC CTGCTGCAATTTCAACATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTCTTGTTTC AAATCCTATGATGTTATGCTGAATTCTAATTAATGGTTGTGTTTTGATTAATTTTTGATTTTCTTAGTAGAAAGTATAGC AAAGACGGGTGCTAAGATGGTTATTATAAGCAACTCCTCAAGGCGCTCATCGGTTACTCTTGAAAAAGTCAAGAGCCTTG GCTTTGATGCTTCTCTTTTTCTTGGAGCCATCACTAGTGGAGAACTCACTCATCAGTACTTGCAAAGGTTGCTTTTAAGT TTATTCGGATACCCGTATTCGTTGTCTTCTCTTGTTAAAGTCCCATTTTCGAAGAGGTTATTTGAGTTTATCTTATAGCA TAGCCGTAAATGCTTAAGCAAGTGTTTGAGAGAGCTTATGTAAATAGTTTATGACTTTTATATGTAGGGAGCTTATTTTC ATAAGTTGCTCGGATTAACTATGAATAAGCGTTTCTGCATTTGAGTGAACAGTTTAATTAAGCGCTTATAGCACAAACAC TTACTGATTTGAGGAACTTAATGGAATAAGCTGAAAATAGATTATAGGTAAACATAAGCTCTTATTAATTAGCTTATGAA AATAAGCTAAAACCAGTTTATAGATAGGCCATAAGTTTTCTCAAACACTTGCATAAATGCTTATGTCATAAGATAAACTC AAATAAGCTCTTCCAGACGAGGCATATATCTATCTACCTTTAACCCGTTTCTCAAATTAGGAATTAGTGCTTATTAGATT AGTACTTTTTGCCATACGTGTTTATTAAGTTGTTTACTTAAACGCCGCATCCTAGGTCTTGTTTCTTTGCAATGTTTAAT TTAATTCAAACTGTAATTTTTTCTGTTACATCTACTGCTTGTGGCTTACTGCTTGCAAGAACATGTTAATGTGTCCAACA GATGCATTTTGGTCCATGTTCAATCATTGGTTCTAATTGTATCATTATGTGTTTCTGCATTTTCACTCTTCTTATAAATT GTGCTTTGAACAGGCGAGATGATCTTTGGTTTGCAGCATTGGGAAGGTCTTGTATTCATTTCACCTGGAGTGGCCGTGGA GCAATATCTCTTGAGGTGTGTAGAGCAACAATGCGTCTTAGCTTGCTTGAATCATATGTTCGCTATATTCAATTGCTACT TCCTATATGTTGTTGTCCTGTACTATTTAAGATGGCATGATTCATGGAGTAATTGATTTCTTGGTAAAGTAAGGAGCAAA GTGGATCCAATTATTCTGGTGATGATGGCTTCCTTCCTTCTAACTAATTTAAGGTGTTCAAAGAATTGAGGAGTTTGATT TGGACTAGGTTACTGAGGCCTTTTTCGTTTTTATCCAAGTCACAGTCAAATTATTTTCAATTATCTCAAGTCTGGGGTGT GTAAAGGAATTGTTTTACACATAAAGATGATTCTCCCAAAAATAATTTACATCATGGGTACTAAAATTTTACCCTATTTG AATAAATTTTAGGGCTTAGACTTGCAAGTTGTGGAGAAAGTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGCACTGAAGC ATTGGGGGATGCCAACGGGAATGCACGTTCAATGAAACTTGAAGACCTTGAAAGAATATTGGAGCTTTGCGCTGCCAAAA GAATTCCTATGGTGGTAGCCAATCCTGATTATGTAACTGTTGAAGCAAGAGAATTGCGTGTGATGCCTGGTGAATTTCCT CTGCCTTCTTCTTTCTCTTTTGCACCAAATCTTAAAGAGTAGCACCTAAATAGTAATTATAAGTTACTTTTTCAGCCAAA GTTACAGCATAAGTTTATTAAAACACATTGTTATCATGACCATGTCACATGTTTAAGAATTGTACTTGTTCCTGTTTCTT GATTGAGTTCCTTTTTCCTTCTATCCAGTTTCACCTTACACCATTTTTTGGGTGTATTTTTAACTTTACTAGGTACACTA GCAGCTAAATATGAGAAGCTTGGGGGTGAAGTGAAATGGATGGGCAAACCTGATGAGGTGATGAAACCATTTCTGTGCAA ATTAATTCAATTTTGATAGTTGTTTTCTCCTGTGTGCAACCCAAGATTTTATTACTTAATGCATATGCATATTTGGAAAT CCCTCTACAAACTACAATTAATTCATTCTTAAATCTAAATCCAAAATCAATTTTGGGAAAAAACTTCTATGAGTAGCTTC TTTGTGCCATAATTGATTCTGAAGAAAAATAAATTGATCCAAACATGCTATTAGACTCTTAGATTAAATGCACACAACGG TACAAGTAAGAATACATATTCAGCTCATATGCTTGTCAATTTACTCCTTAGTTGGCTTTATTATCTGGTGCACAAGGCAA GTCTCAACTTTTGAAGTGATTAAATTGCATGTTTGATCCCTCAAGGATTCTTTAGTTATTGCTTTTGGTTATTACAAGTG TGCACATTGTGCTTGTAGTACTCTTAAGTCTGAACATGCAAAAAAAGTAAATTCATGGTTTTATGGTATCAAGTTAAGCT AAGTTGTGTCCAGTAACTAGCATTAAAATTTATCAGATCACTGCCAAAAAACAATTAATGCAGATATGTTGCTAGCAAGT AACATATTTATGTAATTGATAACGTGATTAACATCTTTGTGGATCTCAACATATCATCTCCTGTTGCATTTGCATATCCA TCCTTATTCCATGTTGTGGATAGTATCCGTAACTATTGAGATTGATCAGATAATCTACAAGTCAGCCATGGCCATGGCTG GCACAGATGTTTCCGACTGCATTGCTGTTGGTGATTCTCTCCATCATGATATAAAGGGTGCTAATGCTGCTGGGATAAAA TCAATTTTTATCACTGGTGGGATTCATGCAACTGAACTTGGACTCCATGGTTTTGGAGAAGTTGCAAATTCATCTTCTGT TGAATCACTTGCAACGAAATATGATGCATATCCATCTTATGTTTTGCCTGCATTCACATGGTAGAACATTGCGTGGGCTG CAATCCAAACCACTCCACTTATAATTGTAATTTTTTAAACCATTATATGATTTATTGGCCATTGGTAGAAAGAACAAACT CTATGTAAAGATATTTGGAAACTGTTGAAAACACGAGAGTATAGTGCATGCATGTGGTATTTCATATTTTCGTGATTTGT TGTCTAATTTGCTCTTACTCAACCTGATACATTACCGTTAAAAAGTATGAAAATGAGAAAATAATTCATCTCAAAACACT AATATATGTTATTTTTCCATTTCCATACCTCAATGGAATCTCTTTTGATCATCAACCAAAGGTGTTTAGAATAAATATCT AAAGGGTGGTTGCCTA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0067600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTATTATAAGCAACTCCTCAAGGCGCTCATCGGTTACTCTTGAAAAAGTCAAGAGCCTTGGCTTTGATGCTTCTCT TTTTCTTGGAGCCATCACTAGTGGAGAACTCACTCATCAGTACTTGCAAAGGCGAGATGATCTTTGGTTTGCAGCATTGG GAAGGTCTTGTATTCATTTCACCTGGAGTGGCCGTGGAGCAATATCTCTTGAGGGCTTAGACTTGCAAGTTGTGGAGAAA GTTGAAGAAGCTGAGTTTGTTTTGGCTCATGGCACTGAAGCATTGGGGGATGCCAACGGGAATGCACGTTCAATGAAACT TGAAGACCTTGAAAGAATATTGGAGCTTTGCGCTGCCAAAAGAATTCCTATGGTGGTAGCCAATCCTGATTATGTAACTG TTGAAGCAAGAGAATTGCGTGTGATGCCTGGTACACTAGCAGCTAAATATGAGAAGCTTGGGGGTGAAGTGAAATGGATG GGCAAACCTGATGAGATAATCTACAAGTCAGCCATGGCCATGGCTGGCACAGATGTTTCCGACTGCATTGCTGTTGGTGA TTCTCTCCATCATGATATAAAGGGTGCTAATGCTGCTGGGATAAAATCAATTTTTATCACTGGTGGGATTCATGCAACTG AACTTGGACTCCATGGTTTTGGAGAAGTTGCAAATTCATCTTCTGTTGAATCACTTGCAACGAAATATGATGCATATCCA TCTTATGTTTTGCCTGCATTCACATGGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0067600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVIISNSSRRSSVTLEKVKSLGFDASLFLGAITSGELTHQYLQRRDDLWFAALGRSCIHFTWSGRGAISLEGLDLQVVEK VEEAEFVLAHGTEALGDANGNARSMKLEDLERILELCAAKRIPMVVANPDYVTVEARELRVMPGTLAAKYEKLGGEVKWM GKPDEIIYKSAMAMAGTDVSDCIAVGDSLHHDIKGANAAGIKSIFITGGIHATELGLHGFGEVANSSSVESLATKYDAYP SYVLPAFTW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19288:SF46
1 249 249 1.1E-118 –
PANTHER
PTHR19288
1 249 249 1.1E-118 –
TIGRFAM
TIGR01459
2 207 206 7.8E-33
IPR006356
Gene3D
G3DSA:3.40.50.1000
2 214 213 9.1E-35
IPR023214
SUPERFAMILY
SSF56784
2 215 214 6.08E-28
IPR036412
Gene3D
G3DSA:3.40.50.1000
46 160 115 9.1E-35
IPR023214
Pfam
PF13242
160 215 56 3.9E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0067600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…