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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0073500 |
| Transcript ID | LotjaGi4g1v0073500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium binding protein; TAIR: AT2G15680.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9ZQE6|CML1_ARATH Calmodulin-like protein 1; TrEMBL-Plants: tr|B7FMR4|B7FMR4_MEDTR EF hand calcium-binding family protein; Found in the gene: LotjaGi4g1v0073500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9363773..9364327) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAAGGACAAGGTTCCTTGATTTCCAATACAGTCTCTCAAGGAAAAATTACTTGAAGAAGCCATCACGCCTGTTCTC CCTGGATAAACAGAACTCTGGGCTGAAAAATGTTTTTCAGCCAAACATTGATGAGATGAAGCAGGTGTTTGACAAATTTG ATGCAAATAAAGATGGGAAAGTTTCTCAACAGGAGTACAAAGCCACCCTGAAAGCTCTAGGTATGGAGAACTCAGTTCGT GATGTGCCAAATATTTTCCAGGTGGTTGATTTGGATGGAGATGGATTCATCAATTTTGAAGAGTTTATGGAGGCTCAAAA GAAAGGTGGTGGTATTAGAACGATGGAAATACAAAGTGCTTTTCGTATGTTTGATAAGAATGGTGATGGGAAAATAAGTG CAGAAGAGGTTAAGGAAATGCTGTGGAGGTTGGGAGAAAGGTGCAGCCTTGAGGAATGCCGGCGAATGGTGAGAGCAGTG GACACTGATGGAGATGGCATGGTTGACATGAACGAGTTCATGGCTATGATGACTCACTCCCTCAGATATGTTTAA
CDS sequence (LotjaGi4g1v0073500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGGACAAGGTTCCTTGATTTCCAATACAGTCTCTCAAGGAAAAATTACTTGAAGAAGCCATCACGCCTGTTCTC CCTGGATAAACAGAACTCTGGGCTGAAAAATGTTTTTCAGCCAAACATTGATGAGATGAAGCAGGTGTTTGACAAATTTG ATGCAAATAAAGATGGGAAAGTTTCTCAACAGGAGTACAAAGCCACCCTGAAAGCTCTAGGTATGGAGAACTCAGTTCGT GATGTGCCAAATATTTTCCAGGTGGTTGATTTGGATGGAGATGGATTCATCAATTTTGAAGAGTTTATGGAGGCTCAAAA GAAAGGTGGTGGTATTAGAACGATGGAAATACAAAGTGCTTTTCGTATGTTTGATAAGAATGGTGATGGGAAAATAAGTG CAGAAGAGGTTAAGGAAATGCTGTGGAGGTTGGGAGAAAGGTGCAGCCTTGAGGAATGCCGGCGAATGGTGAGAGCAGTG GACACTGATGGAGATGGCATGGTTGACATGAACGAGTTCATGGCTATGATGACTCACTCCCTCAGATATGTTTAA
Protein sequence (LotjaGi4g1v0073500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRTRFLDFQYSLSRKNYLKKPSRLFSLDKQNSGLKNVFQPNIDEMKQVFDKFDANKDGKVSQQEYKATLKALGMENSVR DVPNIFQVVDLDGDGFINFEEFMEAQKKGGGIRTMEIQSAFRMFDKNGDGKISAEEVKEMLWRLGERCSLEECRRMVRAV DTDGDGMVDMNEFMAMMTHSLRYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 181 | 180 | 1.3E-79 | ||
| PANTHER | 2 | 181 | 180 | 1.3E-79 | – | |
| Gene3D | 4 | 109 | 106 | 4.2E-20 | – | |
| ProSiteProfiles | 41 | 76 | 36 | 15.294 | ||
| SUPERFAMILY | 42 | 179 | 138 | 2.85E-43 | ||
| SMART | 45 | 73 | 29 | 5.0E-6 | ||
| Pfam | 45 | 105 | 61 | 7.4E-11 | ||
| ProSitePatterns | 54 | 66 | 13 | - | ||
| ProSiteProfiles | 77 | 111 | 35 | 10.915 | ||
| SMART | 81 | 109 | 29 | 0.0059 | ||
| ProSiteProfiles | 112 | 147 | 36 | 14.095 | ||
| Gene3D | 113 | 146 | 34 | 2.8E-10 | – | |
| Pfam | 116 | 177 | 62 | 4.2E-13 | ||
| CDD | 116 | 178 | 63 | 4.06086E-19 | ||
| SMART | 116 | 144 | 29 | 5.3E-7 | ||
| ProSitePatterns | 125 | 137 | 13 | - | ||
| Gene3D | 147 | 178 | 32 | 1.4E-12 | – | |
| ProSiteProfiles | 148 | 183 | 36 | 13.035 | ||
| SMART | 152 | 180 | 29 | 6.4E-4 | ||
| ProSitePatterns | 161 | 173 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0073500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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