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LotjaGi4g1v0073700.1

Overview

Field Value
Gene ID LotjaGi4g1v0073700
Transcript ID LotjaGi4g1v0073700.1
Lotus japonicus genome version Gifu v1.2
Description Protein CYPRO4; TAIR: AT3G19240.1 Vacuolar import/degradation, Vid27-related protein; Swiss-Prot: sp|P40781|CYPR4_CYNCA Protein CYPRO4; TrEMBL-Plants: tr|G7JL95|G7JL95_MEDTR Vacuolar import/degradation, VID27-like protein; Found in the gene: LotjaGi4g1v0073700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:9383299..9388302) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTGGGCATCATTTTGAATTTTGCTTTGCTTAGCTACAAAGAAAAAGACAGTAAAAAAAAGAAAAGAAAACAGCTACA AAGTAGAGCCTGGGGACACAAATAAAAGAATAATACAAACTGGGTTATGCTCAAATTAATTCATAATTTTATAAGCGAGT TTAATTTTAATCATTCGGGTGGAAAAATATGTTTAACGACAATAAAAAACAATCAATAATTATAGAAATGATCGCCTTTA AACGTCATTTTTCTATCGAGGGATATACAAATGTTAATTGTTAGTAAATAGTTCGGACCCTGAACCATTCACTCTCCCAA ATCCTTATATTCTCTAACTCTTATCACTTTCGAAAACTTTTTAATATCCAAATATTAGTTGTTAGTAAATTAATACAAAT TATCTTCACGTGCAAGTATCCCGCAAACACGTGATAATTTAATAATAAATGGATTACTTCCTTCCTTGCCTTTTTGAAAG AGCGTTAAATCCACGCTGAAAGCAAGCAGAGAGGAGCGTGAGCAGTAAGCACAAGACGCTATAAAACCGTTCTTAACTGA ATCCCCAACACAAGAGAAGAGCCAATTCAATTCAAAAATCAATCAATCAATCAAATCATTTCCATTTCCATTTCCATTTC CATTCTCAGAATTCATGGGCACTTCTCAGAGCCGTGAAGGCCTCGAATTCACCGACTCTGACTCCGATCACGAACACGAA CACGAACAACACGACGAAGACGCACAACCTTCCATACCAAACCAGCTCGATGAAGTTGATGCCAAACTCAAAGCCTTGAA ACTCAAATACTCTTCTTCTTCTTCTTCACCTTCGAATTCAGATTCGAAAACACAGACTCCTCTTACCAGAAACGCCGTCA AGCTTTACCTTCACATCGGCGGCAACACTCCCAATGCCAAGTGGATCCTCTCCGACAAACGCACTTTCTACAAATTCATC AAATCCGACGACGGCGATGATGACGGTGACGACGGTGATGATGGCGGTTATTGGTTTCTTAAAGTCGGTTCCAAGGTTCG CGCTAGGGTTTCCACCGAGATGCAATTGAAGATGTTCGGCGACCAACGCCGCGTCGATTTCGTCTCCGACGGTGTCTGGG CTCTCAAATTCCTCACCGACGAGTTCTACCGGAGATTCGTGACCGAGTTTCAGGACTGTATGTTCGAGAACGTGTACGGC CTCGCCGCCACTGAGGAGAATAAGTTGAAGGTTTACGGCAAGGAGTTTATCGGCTGGGTGAAGCCGGAGGCGGCTGATGA TTCGGTGTGGGAGGACGCGGTTTCCGATGAGGGTGGTTCTGGTTCTGGTTCTGGTTCTGGTAAGACCCCTGAACGGCCTA GAGGGGATTTGATGGAGGAGTTTGAAGAGGCTGCGAATGGAGGGGTTCATACTGTTACGTTGGGGGCTCTTGATAACAGC TTCTTGGTTAACGACACCGGCGTTCGCGTTTACCGGAATTTTGACCGGGGGATTCAAGATAAGGGTGTGGCGGTGAAATT TGGCGGGGGTGGGAGTCTCCGGGGGACGACGACGCCGAATAAGGCTTTACTGATGAGGGCGGAGACTAATATGATGCTCA TGAGTCCCCTCAATAGTGGGAAGCCTCATGCTTCGAGGCTTCACCAGATGGATATTGAGACTGGGAAGATTGTCACGGAG TGGAAGTTTGAGAAGGATGGGGCTGATATTACTATGAGGGATATTACCAATGATACTAAAGGGTCACAGCTAGACCCTTC GGAATCCACGTTTTTGGGGTTGGATGATAACAGGCTGTGCCAATGGGATATGAGGGAGAAGAAAGGGATGGTTCAGAACA TTGCCGGTTCTGGTTCCCCTGTGTTGCATTGGAGCCAGGGGCATCAGTTCTCGCGAGGGACTAATTTTCAGTGCTTTGCG ACGACTGGGGATGGTTCCATTGTGGTGGGTTCTGTGGATGGGAAGATAAGGTTGTACTCGAAGACGTCGATGAGGATGGC TAAGACTGCTTTTCCGGGGCTTGGGTCGCCGATCACCAGCGTTGATGTTACTTTCGATGGAAAGTGGGTGCTGGGAACCA CTGATACTTATTTGGTGCTGATTTGTACCTTGTTCACTGATAAAGATGGGAAGACCAAGACTGGGTTTGGTGGTCGTATG GGAAACAAGATAGGTGCTCCCAGATTGTTGAAGCTGACCCCTCTGGATTCACATTTAGCTGGCACGGGCAATAAGTTTCA TGGTGGCCACTTCTCATGGGTAATGATCATTCCCCCATTAATTTTAGATTGCCTTTTGTTTGTTTACATTAAGATCTTTT ATCTTAAGACACATCCATGTAGCAGCATCTTTTATGTAGCTACTTATAAGAAATGGTAGTAAGATACACTAGTTTGCATC CAACACTTTCTCATTATTAGGTGAAATCAGACCTGGTCATGTTAAGCAACCTGAATTGGTATCTATTAGTGGGGCTAATA TCAGATTTCAACGAGTAATGTTGAAAAGGAAGTGTCAAGGAGTTTGTTATTAGCATTTTTCATTACTTAGATATGAAAAT TTTGGCAACATCGTCAACTATAGCGCATTTAATGATCTTGATTGACTTATGTGAATATAGCTTTTTGTTTAGTTTAGTTT TGTTATATCCCTTCTTTTTTCGAAAAAAAGAAAAATCATTTTGTTTATACCTGTGAATTTCATTAAATTGATAACATTGA TCAAAGAAAACTATAGACCAAACCATTGAAAGAGATTGGAATTTGAATGACCTATCTGTAGACATGATTTGTGATATAGG ACATTATAGCATTAGTTGACCCCATTGTGGAAAGAGGGTTTTGTTTGTTTACTTCTTTTTGTTGCATATACATGCAAATA TCGTTAAATTGAAAATTGTGTGATCAAATCATCAAAGTACCATATATACATGCAAATTTCATTAAATTGAAAATTGTGTG ATCAAAGTCCCATCCCTGTGGCAAATTTCGTTTTATTGTTTCTTTTGTTGTGCGAAAAACAAAATTTGTATTCATATATG GATCAAACTTCTTTGTTTTATGATTTAGCAATAGTATGGGGAAAATCTGGTGGATCAGATGCCTTTCATTTTGATTACAT TGACAATTGAAAATCTTTTAAAAAGTTATAAATCAGTGAATGGTTCCGACTATCCTGATTGAAAATTTTCACAAATAAAC TTGGTTTCAGAGACTTAACGTTGTTCCAGCTATTACTATTTATGTACTCTGAATCCCATAATCTTTGATCTATGGAAACT TTGCTAACAAGTACTTTCAATTTACTTTTGTCGTCTAAGTTAGTGTCTCTCCTCTTACACAAGGTTCTTTTTCCCCATTG TTCTGGTGTGCCTGCTTTTGGGTTTAAGGAATGACTCGACTAAATGTTTATGAATGAATTTGTATATTTTATGTTTAGGT TTTGGTGAAAACAACTTAGCCATTTTGAAACCATCATGGTCAAGTCCATATTTTTTACTGTTAGTATTATTATGTTAGTT GTGGACCTTGGGGTGAAGACTCCCGTGAGTCCCACCTTTGGTTGGAAATGGTACAGTATAGAGGTAATGTGATGCATATC AGAGCATTGTTGGAGATAATCTCATGGGACGAAACATTCCAGTAGCACATTGAAGAAATGATAGGTTGGATAACATGATA ATGGGTAGCCTTTGTAATGCAGGATATTTAAAAAATTGGCGAAGGGGATGTAACAATTACTGAGTTGTGCAAGTATAGGA TCACCACGGTTATAATGTTCGAAATAGCTATAGGCAGGTTGAGAAATTGGGATATTTTGTTTCATAATTTGCCCCATCAA GTAGTATTACAATGTTTTCTGTCAGTTGGGCTGAAATTACATGTAAAAATATATGTGCATGATATTTAGGAGGGAAAAAA GACTCCAGTAAGTCGTCACATACATGATCATAGTGAATTGTATATTTGGATAGCCTCCTCAAAAAAAATATCATGGTAGA ATTCCTTGTTTGTTCCATTTTTGCATACTTGCATGTAATGTGAATTAAAATATTAATTAATCTACACCTTGTGAACTGTA TATAATATAGATAGCCTCCTCTGAAAATCATGTTAGAATTCCTTGTTTGTTTCATTTGCATACTTGCATGTAATGTGAAT TAGAAAAGTAATCTACACCGATGATAATTAGTAGTTTAATCAGTTAGTCAACCTGCAGCAAGCATCACTCATTTGTTTTT TTCTCTTTCAGGTTACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCGACTGTTGGCAAGTTCAGTGTGATATGGGAT TTCCAGCAGGTAAAGAACAGTGCTCATGAATGTTACAGGAATCAACAAGGACTGAAGAGCTGCTACTGTTATAAGATAGT ACTGAAAGATGAGTCAATTGTAGAATCACGATTTATGCATGACAACTTTGCTGTTAGTGACTCCCCTGAAGCTCCGTTGG TGGTGGCAACTCCTATGAAAGTCAGCTCTATCAGCATGTCTGGAAAACGACATGGTTAAACCTTTTTTTACTTTTAAGGA TTCAAGTTTCCAGTGTTAGGAGTTCCTTTGAACAACGTATTGCATATGTTCAAGTCTGTGATGTTGTTTATTCTTCTGTA CAGAAAGTTTTAGAGTGCCCTGTATCTGTTTTCTTACTTATACTGTTGTCATTGATTTTGTGATTACAAGTTTGGGTTTG TGAAGACTGGACTCAGTTCCTTTTGTTTTCAAATTCTAGAAAGATTAATCCCACCATTATATATTGCTACTAAATAAGAT GCTTTATTCTTTGTTCCGAATTATAGTTCAAGTGGTAAGAGATAAGAGATATATGAGTTGGGTCCATGGATCAATCTCTA GAGGGTGTAATTTAGCTTTCTGATATATAAAAAAAATGTTTTACTCTTCCACTCAACACACAGATTAATTAATGTTGCCT TCACATGTCTACTTTATCATACCATTCGATATAATACTCGTGCG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCACTTCTCAGAGCCGTGAAGGCCTCGAATTCACCGACTCTGACTCCGATCACGAACACGAACACGAACAACACGA CGAAGACGCACAACCTTCCATACCAAACCAGCTCGATGAAGTTGATGCCAAACTCAAAGCCTTGAAACTCAAATACTCTT CTTCTTCTTCTTCACCTTCGAATTCAGATTCGAAAACACAGACTCCTCTTACCAGAAACGCCGTCAAGCTTTACCTTCAC ATCGGCGGCAACACTCCCAATGCCAAGTGGATCCTCTCCGACAAACGCACTTTCTACAAATTCATCAAATCCGACGACGG CGATGATGACGGTGACGACGGTGATGATGGCGGTTATTGGTTTCTTAAAGTCGGTTCCAAGGTTCGCGCTAGGGTTTCCA CCGAGATGCAATTGAAGATGTTCGGCGACCAACGCCGCGTCGATTTCGTCTCCGACGGTGTCTGGGCTCTCAAATTCCTC ACCGACGAGTTCTACCGGAGATTCGTGACCGAGTTTCAGGACTGTATGTTCGAGAACGTGTACGGCCTCGCCGCCACTGA GGAGAATAAGTTGAAGGTTTACGGCAAGGAGTTTATCGGCTGGGTGAAGCCGGAGGCGGCTGATGATTCGGTGTGGGAGG ACGCGGTTTCCGATGAGGGTGGTTCTGGTTCTGGTTCTGGTTCTGGTAAGACCCCTGAACGGCCTAGAGGGGATTTGATG GAGGAGTTTGAAGAGGCTGCGAATGGAGGGGTTCATACTGTTACGTTGGGGGCTCTTGATAACAGCTTCTTGGTTAACGA CACCGGCGTTCGCGTTTACCGGAATTTTGACCGGGGGATTCAAGATAAGGGTGTGGCGGTGAAATTTGGCGGGGGTGGGA GTCTCCGGGGGACGACGACGCCGAATAAGGCTTTACTGATGAGGGCGGAGACTAATATGATGCTCATGAGTCCCCTCAAT AGTGGGAAGCCTCATGCTTCGAGGCTTCACCAGATGGATATTGAGACTGGGAAGATTGTCACGGAGTGGAAGTTTGAGAA GGATGGGGCTGATATTACTATGAGGGATATTACCAATGATACTAAAGGGTCACAGCTAGACCCTTCGGAATCCACGTTTT TGGGGTTGGATGATAACAGGCTGTGCCAATGGGATATGAGGGAGAAGAAAGGGATGGTTCAGAACATTGCCGGTTCTGGT TCCCCTGTGTTGCATTGGAGCCAGGGGCATCAGTTCTCGCGAGGGACTAATTTTCAGTGCTTTGCGACGACTGGGGATGG TTCCATTGTGGTGGGTTCTGTGGATGGGAAGATAAGGTTGTACTCGAAGACGTCGATGAGGATGGCTAAGACTGCTTTTC CGGGGCTTGGGTCGCCGATCACCAGCGTTGATGTTACTTTCGATGGAAAGTGGGTGCTGGGAACCACTGATACTTATTTG GTGCTGATTTGTACCTTGTTCACTGATAAAGATGGGAAGACCAAGACTGGGTTTGGTGGTCGTATGGGAAACAAGATAGG TGCTCCCAGATTGTTGAAGCTGACCCCTCTGGATTCACATTTAGCTGGCACGGGCAATAAGTTTCATGGTGGCCACTTCT CATGGGTTACTGAGAATGGTAAACAAGAACGCCACCTTGTTGCGACTGTTGGCAAGTTCAGTGTGATATGGGATTTCCAG CAGGTAAAGAACAGTGCTCATGAATGTTACAGGAATCAACAAGGACTGAAGAGCTGCTACTGTTATAAGATAGTACTGAA AGATGAGTCAATTGTAGAATCACGATTTATGCATGACAACTTTGCTGTTAGTGACTCCCCTGAAGCTCCGTTGGTGGTGG CAACTCCTATGAAAGTCAGCTCTATCAGCATGTCTGGAAAACGACATGGTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTSQSREGLEFTDSDSDHEHEHEQHDEDAQPSIPNQLDEVDAKLKALKLKYSSSSSSPSNSDSKTQTPLTRNAVKLYLH IGGNTPNAKWILSDKRTFYKFIKSDDGDDDGDDGDDGGYWFLKVGSKVRARVSTEMQLKMFGDQRRVDFVSDGVWALKFL TDEFYRRFVTEFQDCMFENVYGLAATEENKLKVYGKEFIGWVKPEAADDSVWEDAVSDEGGSGSGSGSGKTPERPRGDLM EEFEEAANGGVHTVTLGALDNSFLVNDTGVRVYRNFDRGIQDKGVAVKFGGGGSLRGTTTPNKALLMRAETNMMLMSPLN SGKPHASRLHQMDIETGKIVTEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMREKKGMVQNIAGSG SPVLHWSQGHQFSRGTNFQCFATTGDGSIVVGSVDGKIRLYSKTSMRMAKTAFPGLGSPITSVDVTFDGKWVLGTTDTYL VLICTLFTDKDGKTKTGFGGRMGNKIGAPRLLKLTPLDSHLAGTGNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDNFAVSDSPEAPLVVATPMKVSSISMSGKRHG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 - –
PANTHER
PTHR31913:SF3
1 628 628 0.0 –
PANTHER
PTHR31913
1 628 628 0.0
IPR040458
MobiDBLite
mobidb-lite
11 30 20 - –
MobiDBLite
mobidb-lite
212 236 25 - –
Pfam
PF08553
298 571 274 2.3E-42
IPR013863
Gene3D
G3DSA:2.130.10.10
325 561 237 1.8E-8
IPR015943
SUPERFAMILY
SSF101908
327 527 201 4.05E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0073700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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