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LotjaGi4g1v0074000.1

Overview

Field Value
Gene ID LotjaGi4g1v0074000
Transcript ID LotjaGi4g1v0074000.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT4G34410.1 redox responsive transcription factor 1; Swiss-Prot: sp|Q9SZ06|EF109_ARATH Ethylene-responsive transcription factor ERF109; TrEMBL-Plants: tr|B3IX34|B3IX34_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi4g1v0074000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:9425016..9426174) extracted from Lotus japonicus Gifu genome v1.2.

ACTCACTTCTTCAAACCTTTCAACGCTTCCAAAAACCGATCAAATTCTTCTCCAAATTCAACATGTCAACCCTCACCGCC GAGCAAGAATTCTCCGTCATCGTCGCCACCCTCACCAACGTCATCGCCGGCTCCACCTCCACCGTCACCGCCGCCTTTCC AGACCACCAAACCACCACCTTTGACCGGATAGTCCCTCCACCTGCCTCCATGGAAACTTGCAAGGAATGCAACATTGCAG GATGCTTGGGATGCAAATTCTTCCCGGAAGAAGAGAGCAATAACAACAACAACAACAACAACAACAACAGCAACAGTAAC AGTAACAGCAACAAGAAGAAGCAGCAGAAGAGGGCAAAGAAGAAATACAGGGGAGTGAGGCAGAGACCTTGGGGGAAATG GGCTGCTGAGATTCGCGACCCGAGGCGCGCGGCCCGGGTCTGGCTGGGGACGTTCAACAATGCAGAGGATGCCGCCCGGG CTTACGATAAGGCGGCGATCGAGTTCCGCGGGCCGCGGGCTAAGCTTAATTTTCCAATGGTCGATGAGTCGCTCATGAGC TTGCAGCAGCACGCGGCGGAGGCAGAAGTGGTTAATGCGCCGCCACCGCCTTCGGCTGGGAATGTGATCAACCAGGGAAT GGAATTGGAAGGAGTTGATGGTGATCAATTTTGGGATAGGATTGGGGATGCGGATTTTCAACAGCTGATGATGATGATGG ATTTTTCTAGAGATTCCTCTGACTCTGTTACTGGGAACACTCTTAGTAACAGTTCCTGATTGTTCTATAGCAAAAAAAAA AAATTAGTTAGTTTTGGTGGTAATGTGTGGTTTTAGGTGTAGCACAACTTGTTAAGTGTGTTGATTAGCTTCGTTGGATT TCTATTTTCTCTTCTTCGGCTAAGATTTTTTCAGGGAGGAATTTGCAAGCTTAGAAATCACGATCCAGTTCACAATGTTT GAATTTTGCAGAAGAATCTGCTTGTATAAAAATTGTATCTATGTTTGTTGCTTTATTCTTGTAGATTTCTGAACTTATTT CCTCGTTTTAGCTTCAGGGCCAATGAACAGAAACATCAAAACAAGAAGATAATGGATAACAACAATTTATCCATTTTTAG TAAGGAGTTCACTTTGACTGTACGGTCAGCATATGAAAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAACCCTCACCGCCGAGCAAGAATTCTCCGTCATCGTCGCCACCCTCACCAACGTCATCGCCGGCTCCACCTCCAC CGTCACCGCCGCCTTTCCAGACCACCAAACCACCACCTTTGACCGGATAGTCCCTCCACCTGCCTCCATGGAAACTTGCA AGGAATGCAACATTGCAGGATGCTTGGGATGCAAATTCTTCCCGGAAGAAGAGAGCAATAACAACAACAACAACAACAAC AACAACAGCAACAGTAACAGTAACAGCAACAAGAAGAAGCAGCAGAAGAGGGCAAAGAAGAAATACAGGGGAGTGAGGCA GAGACCTTGGGGGAAATGGGCTGCTGAGATTCGCGACCCGAGGCGCGCGGCCCGGGTCTGGCTGGGGACGTTCAACAATG CAGAGGATGCCGCCCGGGCTTACGATAAGGCGGCGATCGAGTTCCGCGGGCCGCGGGCTAAGCTTAATTTTCCAATGGTC GATGAGTCGCTCATGAGCTTGCAGCAGCACGCGGCGGAGGCAGAAGTGGTTAATGCGCCGCCACCGCCTTCGGCTGGGAA TGTGATCAACCAGGGAATGGAATTGGAAGGAGTTGATGGTGATCAATTTTGGGATAGGATTGGGGATGCGGATTTTCAAC AGCTGATGATGATGATGGATTTTTCTAGAGATTCCTCTGACTCTGTTACTGGGAACACTCTTAGTAACAGTTCCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTLTAEQEFSVIVATLTNVIAGSTSTVTAAFPDHQTTTFDRIVPPPASMETCKECNIAGCLGCKFFPEEESNNNNNNNN NNSNSNSNSNKKKQQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNNAEDAARAYDKAAIEFRGPRAKLNFPMV DESLMSLQQHAAEAEVVNAPPPPSAGNVINQGMELEGVDGDQFWDRIGDADFQQLMMMMDFSRDSSDSVTGNTLSNSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE
SignalP-TM
1 30 30 - –
PANTHER
PTHR31677:SF55
2 236 235 9.9E-93 –
PANTHER
PTHR31677
2 236 235 9.9E-93 –
MobiDBLite
mobidb-lite
74 91 18 - –
MobiDBLite
mobidb-lite
74 105 32 - –
Gene3D
G3DSA:3.30.730.10
100 160 61 1.0E-31
IPR036955
SMART
SM00380
101 164 64 7.5E-38
IPR001471
ProSiteProfiles
PS51032
101 158 58 24.935
IPR001471
SUPERFAMILY
SSF54171
101 159 59 1.5E-22
IPR016177
Pfam
PF00847
101 150 50 5.0E-13
IPR001471
PRINTS
PR00367
102 113 12 3.5E-11
IPR001471
CDD
cd00018
102 158 57 1.8418E-33
IPR001471
PRINTS
PR00367
124 140 17 3.5E-11
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0074000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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