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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0076100 |
| Transcript ID | LotjaGi4g1v0076100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FXA3|BH095_ARATH Transcription factor bHLH95; TrEMBL-Plants: tr|G7JK21|G7JK21_MEDTR Helix loop helix DNA-binding domain protein; Found in the gene: LotjaGi4g1v0076100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9736034..9738754) extracted from Lotus japonicus Gifu genome v1.2.
TCGCACTCTCTCACTATCTCCGTATCTCTCACTCTCTCTCTTAATCTCTCTCTTCACTGTAGGCATGGCTTTAGAAGGTC ACGATCTTAATTCAGGGTTCTTGTGGAAAAACCGGTCATGGGGTAGTCTTCCTGATTTTGATGACATTGGTGAGAGCAGT GATAAGTTAGGTATGAAGCCACAGAAGAAGCAGGGAGAAGGAAATGGAGAAGAAGCTCTTGTGAATAAGAAGCGAAATCG AGGTGGTAGAAGGGAAAAGAATGTTGTTGTTGATGATGGAGGGAAAGATGATGATGAAGTTCATATGTGGACTGAGAGAG AAAGGAGAAAGAAAATGAGGAACATGTTCGATACCCTTCATGCTTTGCTTCCTCGGCTTCCCTCTAAGGTAAAATTCTAG GTCATTCTTCTAGTTTGAATTGTAAAAGTATTTCTAGTAATGAACATTTTCCCTCATTAATAAATTTTGATCCTTTGCAT GTATACCTTTCCTTTGGCTTAATTTTGATCATTCTTAAAAGGAGCATTCCTTTGATGTTTTGCCATGAAGTTTTCTGTAT TATATTTGTCAGGATCTCCGAGTTTTGTATATCTTTTTCAACCTTGGACATAAATGACACATCTAATATTTTTAAACATA TATATATTTCTAGATGTACTTTTCCCTTTCTAATTAGGTTGGACAAAAAATACAGAAATAGTAATTTAAAATTTTATTTT TAATCCTCGTACTAAAACAATAGAAGATCATACGCCAATCTAAGGTTTGGATTGGTTTCAAAATTTTTATACAGATAATA TTTTTACCAAATATAAAATACACCATTTTAATTTTCATGTTAAGTATTTCTAAATTAAAAAACAACCGATATATAGTCAA AATATTTTTTTATTTTATATAGTTTTAAGTTATATTATTAATATTGGTGTATCTTGAGAACACATTAGATAATTTTTGTG GTATTTATAATGTAATATATGAGATATTATATTTTCAATGCAACTGTTGATTTTAATATTTAATCATCTGATCCAAAATT ATTGAGTAGCACAAGAATATTAAAACTCCGCGAATATTATGTTTGTTGTTACGTTGTTGTTATTGTTGTTGTTGTTACTG TTGTTGGCCGCAAACAAATTGTACAAATTGAAGCATTTTTTTTTTAAATAAAACATTGATAATAGTTTAATTTGTATTTT TCATCTAATAAATGAATTATTTTAATACAAAATTATATTTTATTATCTTCATTCCTAAAGGTGGATGCACACATAATAAT ATTATTATGTTATCACCATCATCATCATTATTGCTACCTAAGCAAAGTTAAAAAAAATATAAATAATAAAAAATATTGTT CTTCTTATGGAGACCACAATAAATGTATTATGTCAAAAAAAAAAGAGTAAATTAACTTTGTTACCTTCAAAACTGAGAGT CATCATTATGATGACTAAAACTTGTATATTTTCAAACACCCACATCTAGACTTGAGCTTAGTTAGCCCAACTAATGATTG ACTATGATGCTTTGATTTTGATTCCTTTGCAGCCTGATAAATCAACTATCATCGACAAAGCAGTGAGCTACATAAAAACC CTGCAGCAGACCCTCGAAAAGCTTGAGAAACAAAAGAAAGAAAGGCTCCAACCAACTGTGATAAACTCGCAGTGGCAACA ATCCTATGATTTGAGGGAGGGATTTATTCTTGATATGGGGTCTTCGAACAACTTGTCCTCTGCAATGGTTGGAACGGGAA GTTCTTCAAATCCTTCAATTTCATCTAATTTAGCTTATGTGCAACCTATGGGTTTTCAAACATGGTCTTATCAAAATATA GTGTTGAACGTTATTGGATTTGAAGCACAATTTTCCATTTCTACTGCCAAGAAGAAAAGTACCTTAACCACCATTGCTTT TGTGTTGGAAAAGTACAAGATTGAGGTCATTTCTGCTAACATTGTGTGCAATGGTAATACAAATGTGTACCTCATTATTG CCCAAGTAAGTTTGAAACTCAATCCCCCACTTTATCATTTTCTTCTTTTAGGCGATGACAAATTGTTCATAACATAATTA GAATATTTATATTTGCAGGCAAAACAAGATTCATATCTATTTCAAGATGCAAATTCGGTTGCTGAAATTTACAAGCAAGC GGCTGGAGAAATTCAGCTATTCATCGCTTAAATTTTGATCAAAAATTAAGAATTATCTATTTATCTTGTTTACTGTATAA TTTTATTTTTCCTAGAAATATTTCAAGCATTTATTCCCAAACATTAAATTCTCATGTTGTGAGGGTTCGTTCTCGCACTG ATAGGAGGAAGGTGACCTCCCCCTTAGCGTTTCATCAGGCGCAGGGATGATGCACCAAGGCCCGGTCAGCCTGGCCAAGC TCCTCGTCCTGCTGGAGTTGGAGCTCCTCCTCGTGCTTAAAACCAAATTTCAAGATTTTTGGCCTTCTTGGATCAAGTGT GATCATATGAAGCTTACTTGTCTTTGTTATATTTAAGCTTTTTGGCCCTGCTGGATCAATTTTAAGATATTTTATTTTGT TCTAGTTGTTTGTTTTAGTCCTTAATCAATAGATTCCCCTTTCAAGGCTCCTTGTAGAGGTTTTCTCTTCATAACTCAGA GTTTGCATAGTAGAAGGTTGAAAGTGGAGTTGTTCTTCTTTGTGTAGTCTGTCACCCCACACCTCAGGCTTGTCTTCATA T
CDS sequence (LotjaGi4g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTAGAAGGTCACGATCTTAATTCAGGGTTCTTGTGGAAAAACCGGTCATGGGGTAGTCTTCCTGATTTTGATGA CATTGGTGAGAGCAGTGATAAGTTAGGTATGAAGCCACAGAAGAAGCAGGGAGAAGGAAATGGAGAAGAAGCTCTTGTGA ATAAGAAGCGAAATCGAGGTGGTAGAAGGGAAAAGAATGTTGTTGTTGATGATGGAGGGAAAGATGATGATGAAGTTCAT ATGTGGACTGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGATACCCTTCATGCTTTGCTTCCTCGGCTTCCCTC TAAGCCTGATAAATCAACTATCATCGACAAAGCAGTGAGCTACATAAAAACCCTGCAGCAGACCCTCGAAAAGCTTGAGA AACAAAAGAAAGAAAGGCTCCAACCAACTGTGATAAACTCGCAGTGGCAACAATCCTATGATTTGAGGGAGGGATTTATT CTTGATATGGGGTCTTCGAACAACTTGTCCTCTGCAATGGTTGGAACGGGAAGTTCTTCAAATCCTTCAATTTCATCTAA TTTAGCTTATGTGCAACCTATGGGTTTTCAAACATGGTCTTATCAAAATATAGTGTTGAACGTTATTGGATTTGAAGCAC AATTTTCCATTTCTACTGCCAAGAAGAAAAGTACCTTAACCACCATTGCTTTTGTGTTGGAAAAGTACAAGATTGAGGTC ATTTCTGCTAACATTGTGTGCAATGGTAATACAAATGTGTACCTCATTATTGCCCAAGCAAAACAAGATTCATATCTATT TCAAGATGCAAATTCGGTTGCTGAAATTTACAAGCAAGCGGCTGGAGAAATTCAGCTATTCATCGCTTAA
Protein sequence (LotjaGi4g1v0076100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALEGHDLNSGFLWKNRSWGSLPDFDDIGESSDKLGMKPQKKQGEGNGEEALVNKKRNRGGRREKNVVVDDGGKDDDEVH MWTERERRKKMRNMFDTLHALLPRLPSKPDKSTIIDKAVSYIKTLQQTLEKLEKQKKERLQPTVINSQWQQSYDLREGFI LDMGSSNNLSSAMVGTGSSSNPSISSNLAYVQPMGFQTWSYQNIVLNVIGFEAQFSISTAKKKSTLTTIAFVLEKYKIEV ISANIVCNGNTNVYLIIAQAKQDSYLFQDANSVAEIYKQAAGEIQLFIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 15 | 73 | 59 | - | – | |
| MobiDBLite | 27 | 73 | 47 | - | – | |
| PANTHER | 36 | 288 | 253 | 5.8E-84 | – | |
| PANTHER | 36 | 288 | 253 | 5.8E-84 | – | |
| Gene3D | 73 | 141 | 69 | 7.4E-16 | ||
| SUPERFAMILY | 74 | 147 | 74 | 7.07E-17 | ||
| ProSiteProfiles | 75 | 125 | 51 | 14.03 | ||
| CDD | 80 | 130 | 51 | 2.33988E-13 | ||
| SMART | 83 | 131 | 49 | 2.3E-10 | ||
| Pfam | 83 | 126 | 44 | 5.0E-11 | ||
| Coils | 115 | 138 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0076100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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