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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0076200 |
| Transcript ID | LotjaGi4g1v0076200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FXA3|BH095_ARATH Transcription factor bHLH95; TrEMBL-Plants: tr|G7JK21|G7JK21_MEDTR Helix loop helix DNA-binding domain protein; Found in the gene: LotjaGi4g1v0076200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9751082..9753580) extracted from Lotus japonicus Gifu genome v1.2.
AGAGGAGAACATTTTGGTATTTGCTGTACGCGGTGATTATGCTCTCAGTATTTGTTAGGATGCAGAGTAACGCCCTGCCA ACTTTCATCATTTCTATTTTCTTTTTCTTTTTGTTTTCTCCTCAAAAGCTTCAACTAAACTTTGTCACCTTTATATAAAC GCACCCTTCTCCTTTCTAAATTCTTCAAACTCTTTGTTTCTCACTCACTCACTCTCTCTCTCTCTCACTCATTCTCTCAC TCTGTCTCACTTTGGTCATGGCTTTAGAAGGTCACGATTTGAATTTGGGTTTCGTGTGGGAAAGCCAGTCTTTGGGTTCT CTTCCCAATTTTGATAACGCAAGTGAGAGCAGAGAGAAGTTAGATATAAAGCCACAAAACAAGAAGGAAGAAGGAAATGG AGAAGAAGCTCTTGTGAATAAGAAGAGAAGTCGAGGTAATAGAAGAGAGAAGAATGTTGTCGCTGATGGTGAAGGGAAAG TTGATCACGAAGTGCAGATATGGATTGAGAGAGAAAGAAGAAAGAAAATGAGGAACATGTTCGATACCCTTCATGCTTTG CTTCCTAGGCTTCCCTCTAAGGTAAAATTCCAGGTCATTCTTCTAGTTTGAAGTATAAAAGTATTTCTATTAATGAACAT CTATCCCCATTGATTAATTTTCATCCCTTGCATGTATATCATTCCCTTGTTTTTTTTCCCATGAAGTTTATCTATGTGAT ATCAGGAATTCCAGGTTTTCTATATTTTTTTCGACCTTGGACAAAAAAGACATATCTAAAATTCTTTTAAACATATCTTT ATCTCTACATGTACTTTTTCCCCTTCTTATCAGGTTCGAAAAAAAAATAAAAAACAAAATTTTTATTTTTTATTCTAATC GTTGTGGGGAAATGGAAGACCATACACCGATCTAAGGTCAAGATCGGTTTTAAAATTTATACAAATAATATTTTTTTTAC TGAATATCAAATAACCCTCTTTGCTTTTCATGTTAAGTATTGTTATAATTAAACAAAATAGATATATAATCAAAATATTT ATATTTTATATATTTAAAATTTATACCGTTAACATTGATGTATCTTGAGGACATATTAGATAATTTTTTATATATTTATA AATGTAATATATGTTATTTGAATATTTGATAATTTGATCTAATATTATTGAGTGGCACAACAATAATAAAGTTTTATGCA AATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTACTACTGTTGGATGTGAAAAAAAAGACAAATG AAAACTTTTTTCTGAAAAATAAAACATTGATAATAGCCTTTGTATTTTTCATGTGATAAATGAATTATTTTAATAAAAAA TCTTATTTTATCTTCACTCCTAAATATGGATGCAGGCATGATATATTATTATTTTATAATGACACAATTATTATTATTAT CATTCTTGCTACCTATAAAATGTTCAAAAAGTATAACCGACTACAATAGATGTGTTACGTCAAAAAAATACAATAAACTA CCTTTGTTACCTTGGAAACTGAGATTCATCATTATGATGACCAGAACTTATATCTTTTCAAACATGCACATCCAAACTTG AGCTTAGTCGGCCCATTCCATGATTTACTAAATTGCTTTGATTTTGATTCCTTTGCAGGCTGATAAGTCAACCATCATCG ACGAAACAGTGAGCTATATAAAAACCTTGCAGGAGACCCTCGAAAAGCTTGAGAAACAGAAGCAAGAAAGGCTCCAATCA TCTATGTTAAACTCGCAATGGCAACAACCCTGTGACTCAAGGGAGGGTCTTATTCCTGATATGGGATCTTCGATCAGCTT ATCCTCTGGAATGGTGGGAATGAAAACTTCTTCAAATCCTTCAATTTCATCTAATTCAGCTTCTGTGCAACCAGTGGGTT TTCAAACATGGTCTTATCAAAATATAGTGTTGAATGTTATTGGATTTGAAGCACAATTTTCCATTTCTACTGCCAAGAAG AAAAGTACCTTAACCACCATTGTTTTTGTGCTGGAAAAGTATAAGATTGAGGTCATTTCTGCTAACATTGTATGCAACGG TAATTCAAATGTGTACCTCATTATTGCTCAAGTAAGTTCAAAACTTTATCCCCCACTCTATCATTTTCTTATTTAGGTCA TGATGAATTGTTCATAATAATATATATATATATATATATATAATTTGCAGGCAAAACAAGATTCATATCTATTTCAAGAT GTAAATTCGGTGGCTGAAATTTACAAGAAAGCGGCTGGAGAAATTCAGTTATTCATTGCTTAAATTTTGGTCACAAAATT AAGACTTGTCTATTTATCCTGTTAATGTATAATTTTATTTGCGTTAGAAAAAGTTCGTGCTTTTATTCCGTAACATTAAA GCAGACTATTATAATCTTTCATCTTTGTACTGTAATTGAAACTAGTATGTGTGTTTTCTGTGTTCGTTTCCCAATATTAT AGAGAGAGAGTATTAAAAC
CDS sequence (LotjaGi4g1v0076200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTAGAAGGTCACGATTTGAATTTGGGTTTCGTGTGGGAAAGCCAGTCTTTGGGTTCTCTTCCCAATTTTGATAA CGCAAGTGAGAGCAGAGAGAAGTTAGATATAAAGCCACAAAACAAGAAGGAAGAAGGAAATGGAGAAGAAGCTCTTGTGA ATAAGAAGAGAAGTCGAGGTAATAGAAGAGAGAAGAATGTTGTCGCTGATGGTGAAGGGAAAGTTGATCACGAAGTGCAG ATATGGATTGAGAGAGAAAGAAGAAAGAAAATGAGGAACATGTTCGATACCCTTCATGCTTTGCTTCCTAGGCTTCCCTC TAAGGCTGATAAGTCAACCATCATCGACGAAACAGTGAGCTATATAAAAACCTTGCAGGAGACCCTCGAAAAGCTTGAGA AACAGAAGCAAGAAAGGCTCCAATCATCTATGTTAAACTCGCAATGGCAACAACCCTGTGACTCAAGGGAGGGTCTTATT CCTGATATGGGATCTTCGATCAGCTTATCCTCTGGAATGGTGGGAATGAAAACTTCTTCAAATCCTTCAATTTCATCTAA TTCAGCTTCTGTGCAACCAGTGGGTTTTCAAACATGGTCTTATCAAAATATAGTGTTGAATGTTATTGGATTTGAAGCAC AATTTTCCATTTCTACTGCCAAGAAGAAAAGTACCTTAACCACCATTGTTTTTGTGCTGGAAAAGTATAAGATTGAGGTC ATTTCTGCTAACATTGTATGCAACGGTAATTCAAATGTGTACCTCATTATTGCTCAAGCAAAACAAGATTCATATCTATT TCAAGATGTAAATTCGGTGGCTGAAATTTACAAGAAAGCGGCTGGAGAAATTCAGTTATTCATTGCTTAA
Protein sequence (LotjaGi4g1v0076200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALEGHDLNLGFVWESQSLGSLPNFDNASESREKLDIKPQNKKEEGNGEEALVNKKRSRGNRREKNVVADGEGKVDHEVQ IWIERERRKKMRNMFDTLHALLPRLPSKADKSTIIDETVSYIKTLQETLEKLEKQKQERLQSSMLNSQWQQPCDSREGLI PDMGSSISLSSGMVGMKTSSNPSISSNSASVQPVGFQTWSYQNIVLNVIGFEAQFSISTAKKKSTLTTIVFVLEKYKIEV ISANIVCNGNSNVYLIIAQAKQDSYLFQDVNSVAEIYKKAAGEIQLFIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 71 | 49 | - | – | |
| MobiDBLite | 29 | 71 | 43 | - | – | |
| PANTHER | 33 | 288 | 256 | 1.2E-84 | – | |
| PANTHER | 33 | 288 | 256 | 1.2E-84 | – | |
| Gene3D | 72 | 142 | 71 | 1.5E-14 | ||
| ProSiteProfiles | 75 | 125 | 51 | 13.059 | ||
| SUPERFAMILY | 80 | 150 | 71 | 2.09E-15 | ||
| SMART | 81 | 131 | 51 | 6.4E-10 | ||
| CDD | 83 | 130 | 48 | 8.72331E-12 | ||
| Pfam | 83 | 126 | 44 | 5.8E-10 | ||
| Coils | 115 | 142 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0076200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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