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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0077000 |
| Transcript ID | LotjaGi4g1v0077000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor, putative; TAIR: AT2G03340.1 WRKY DNA-binding protein 3; Swiss-Prot: sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3; TrEMBL-Plants: tr|A0A151TZD4|A0A151TZD4_CAJCA Putative WRKY transcription factor 3; Found in the gene: LotjaGi4g1v0077000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:9865680..9869210) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGATATAGTCTATACACTTATGAAAAATTAGGGTTTAGGATTTTTCTAGTTCTCTCTTCACAAGATCTTTGTTCATG ATTGCTCTTCGATATTTGTCAAGGTCTCCTTCTTCATCCATAACAAGAATAAGGTACATGCTATTCATCTCCAATTATGT ATTTCTTGTGATACGATATGCAAGATTGTTTATCTACATCGTTGATCTTGTGTGCGCTACTCTTATAATTTCAAAAATCG ACATCAGAGCCTCACAGTTCATACTTTGGTTGTTCTTTTTTGTGTTTATCAGAATTTACAGATCTAAAATTTATGAACCG TTATTGATGGATATAAATCATAATTTAAATTTGGATTTTTTTCTGTTTTTACTTACTTACTTCTGATTCGATTGTTGTTT TGAGAAGCTTGTTGTGTTTTTGTTTTGGGGGTTGGATGCGACTCATTGCGTTGGATTGAGGAATCCCGATCTTGTTTTAT GCTATATGCACTAGGAAACAGGTATTTGGAATTGGATTAAGAGTCGCGATTTTTGGGGATAAATATTTGATCTACTAAAC CATAAGCTTTAGACAAACAATGGTGCAACAATAATAATAATAATATAACGAAGAGATTTAATCTTATAATCTATTTGCCT AAAATGCTACTTCAAGCTCAAGAGGCGTTCGTAGACATTGTATTTCTTGTTTTTTTTTTTTAATTTAGATTCAAAATATG AGGTGACAAGTACACAATTTATATTCTATTTATAAAAATGTTTGTTGAGAATTCAAGTGTGAGTTGGAGTCTCACATTGG TAAAGTATGGGTGAGGAGAATACTTTATAAGAGATGTAACTCATAAACCTAATGTCTTAAGGTTTTGAGTTGAGATGTGG CGTCGATATCTCATGGTGTCTTGATCCTCGACCCATGGGCTCCCCTATCTCCCCCAACAAGCCAATGATTTGTGGGATCA TGGTAACAGTTTCTTGTGTCGAAAGTCTTCCTAGTAGTGTGGCTAGACAGTGGGTTCCGTTGACGCAACGAATGATGGTA CAAGTGCGGATAGCTTCCGCTAAGGGGTGCCATGATAATGTGGTAGTAACTCGTACTTGAGGGGGATATTGTTGAGAATT CAAGTGTGAGTTGGAGTCCCTCACTGGTTAAATATGAATGAGGAGAAGACATTATAAGAGATGTGACCTATAAACCTAAT GCCTTAAGGTTTTGGGCTAAGATGTGGCGTTGATATCTCTTGGTGTCTTGCTCCTTGGCCCATGGGCTCCCCTGTCTCCC CTAACAATGTTGTAATCACAAAATAAAATTGCTAGTCTTGACATGATATACAACATATCTCTAATTGATGTCATTTTTAT CATCATAACTCTTATAGACTTTTAAGATGTTTGGTCCATTCTTTAGAATTTTATTTTTCTGTTAAATTTTATTATGCTTT TCCATCCATCATTCTTTGTACGAAATATAGGCATGCTAACATATATGATATATATGCCCATCAAATACTATCATCTGCAG TTTTAAAGCTTATATAATTTTGCTTTGGGTTGATATGCACTTTGCCTATTATTGATATTATAGTTTTAGTATTTCTTTTG TTTCTGTTAGGTGACTAATGCTATCCAAGTTGGAGAATGTTAGAGTTTTATTTTACTTTACATGGATTAGCAATAATCAA TTCATTAGAATACGTGACATTTGAATTATAAGTATATCAATTAATGGATATAATTATTAATTATAGCGCTTAGCCAACTC ATGGCAATTGGGCTTTAGCTATCAATAACTTGTGATGGAGTATGTCATCCACTTATTGGCTATTGAGAGGTCCTACCCTT ATCTGGTTAATTAGAAAAGTAGTAACCCGTTAGGAACTTTGATATTCTTTATATGCTTAACAGAAGATAGAGTAGTTTCT CTCACATTAGAATTTCTTTGGTTCTTTCTTCCCAAAATATTTGCTTGTAATTACTCTTTAAGATTTAGAAAGGTTCTCCT CCTTCACTTAACAAGAAGAAGTTATCCATAATATTTATCTACAATTCTCTATTACTTGTGATAGACATGTTATATTGTGT ATCTAAATCCTTGATCGTGTACGGGCTACTCTTAAAATTGCAGTAATTGCACCCATATTGCTAGCAATGGAAGATTCTAT TGGATTTTCTCACTCTAAAAAAGAAGTGAATTCATTTTCTGTAAATGTTGGCAAGTTCCATGACAATGGCAACAACTGTA GCTGGAAAAAGTATGGGTATAAGCTGGTAAAAGGTTTTTTGTTCACTCGATACTATTATAAGTGCACACATCAAGACTGT CCCGCTAAGAGGAACGTTTTGCATTCTCTTGATGGTAATTTAACTGAAGTAAGTTATAAAGGAAATCACAATCATCAACT TCCTCATCTCAACAAGCTCAATTCAAATGAAAGTTCCAATATAAAAGGTATTCTTTATTCAACTTGTCAAATTCAGTGTG GAAGTTTAAATAGATTGAAAAAAGTTCAAATTAACTAGGTTAGTTCTCACCCAATGTTTAATATGAATCTAGAATCTAGA CAGGCTTCAGTTCAACTTGTGTCAAGAACAAGTGAGAGGCAAGAAATAGGTGGTAATGAAGTGGTTGAGAAAAATGATGA ACCTGGTCCCAAGAGAAGGTAAGGCTTAAGTTCATAACCTACATGTTAATTGGGATTATCAATTGGCTTTAGGTGATAAT ATTTTTATTTGTTTGCAGAAACATAGGAGTCAGTCTGGCGGATACTCCAACATTTTCACGCAGCACAACCTCTAACCATA GACTTATTGTGAAAACAATAAGTAATTTGGATACTGTAGACGATGGATATAAATGGCGCAAATGTGGGCTGAAAGATATT AAAGGCAACCCTAATCCGAGGTGATATTGTGTTCCCTTACGCTTAACTTGTATCTATTTGATTAAAATTATCCATAACAT TTTTTAAAATAAAAGGTTTCTTAAATGTTCAAAATTATTCATCATACACAATTTATGCAAGATCATAAAACAAATTTTAG ATAATCATTCATTTTTTTTATCATATGTAGGAGCTATTACAAATGCACAGCCCCAGACTGCGTTGTGCGGAAGCAAGTTG AAAGGTCTCCAACGGATCTAAGAGTTGTCATAACAACATATGAAGGAATGCATAATCATGATAAGCCACCACCTAATAGT CTTATTCTTACCAACAATAATGCATTATAAAATCATAAAATTCCATACTCAAAGGGCATAGTGGGGCGGGTCTCAAGTTG CAGTAGCCTCAATTGTGGCATGTCTAAAGGTTGAAGGAAGAACATGTTTAAACTGTTCAATTTTATGCTTTCTTGACTCA TGAGTATATGGCCAAAGTTTTAACTAAGGCCTATCAATTCAATACCTGATATATAAACAATAAGAAATGTTCTCTTATGA TTCGTTTTAAAATCCGTGTTAAAGTTTACGGAGGACAAACGTTTCAATTTAACAGTTATATGAACATTAGTTTTGTATGA TACAATACCCC
CDS sequence (LotjaGi4g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATTCTATTGGATTTTCTCACTCTAAAAAAGAAGTGAATTCATTTTCTGTAAATGTTGGCAAGTTCCATGACAA TGGCAACAACTGTAGCTGGAAAAAGTATGGGTATAAGCTGGTAAAAGGTTTTTTGTTCACTCGATACTATTATAAGTGCA CACATCAAGACTGTCCCGCTAAGAGGAACGTTTTGCATTCTCTTGATGGTAATTTAACTGAAGTAAGTTATAAAGGAAAT CACAATCATCAACTTCCTCATCTCAACAAGCTCAATTCAAATGAAAGTTCCAATATAAAAGAATCTAGACAGGCTTCAGT TCAACTTGTGTCAAGAACAAGTGAGAGGCAAGAAATAGGTGGTAATGAAGTGGTTGAGAAAAATGATGAACCTGGTCCCA AGAGAAGAAACATAGGAGTCAGTCTGGCGGATACTCCAACATTTTCACGCAGCACAACCTCTAACCATAGACTTATTGTG AAAACAATAAGTAATTTGGATACTGTAGACGATGGATATAAATGGCGCAAATGTGGGCTGAAAGATATTAAAGGCAACCC TAATCCGAGGAGCTATTACAAATGCACAGCCCCAGACTGCGTTGTGCGGAAGCAAGTTGAAAGGTCTCCAACGGATCTAA GAGTTGTCATAACAACATATGAAGGAATGCATAATCATGATAAGCCACCACCTAATAGTCTTATTCTTACCAACAATAAT GCATTATAA
Protein sequence (LotjaGi4g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSIGFSHSKKEVNSFSVNVGKFHDNGNNCSWKKYGYKLVKGFLFTRYYYKCTHQDCPAKRNVLHSLDGNLTEVSYKGN HNHQLPHLNKLNSNESSNIKESRQASVQLVSRTSERQEIGGNEVVEKNDEPGPKRRNIGVSLADTPTFSRSTTSNHRLIV KTISNLDTVDDGYKWRKCGLKDIKGNPNPRSYYKCTAPDCVVRKQVERSPTDLRVVITTYEGMHNHDKPPPNSLILTNNN AL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 230 | 229 | 2.0E-74 | – | |
| PANTHER | 2 | 230 | 229 | 2.0E-74 | – | |
| Gene3D | 12 | 87 | 76 | 9.0E-18 | ||
| SMART | 25 | 85 | 61 | 2.4E-16 | ||
| SUPERFAMILY | 27 | 86 | 60 | 1.01E-17 | ||
| Pfam | 30 | 84 | 55 | 5.4E-17 | ||
| ProSiteProfiles | 33 | 86 | 54 | 16.467 | ||
| MobiDBLite | 81 | 104 | 24 | - | – | |
| Gene3D | 153 | 230 | 78 | 1.0E-29 | ||
| SUPERFAMILY | 161 | 229 | 69 | 8.63E-27 | ||
| ProSiteProfiles | 164 | 229 | 66 | 31.215 | ||
| SMART | 169 | 228 | 60 | 7.7E-32 | ||
| Pfam | 170 | 227 | 58 | 2.5E-23 | ||
| MobiDBLite | 222 | 242 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0077000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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