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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0078900 |
| Transcript ID | LotjaGi4g1v0078900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT1G70985.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|P61406|EST1A_MOUSE Telomerase-binding protein EST1A; TrEMBL-Plants: tr|I1KM39|I1KM39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0078900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10290424..10294418) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGAGAAGAAAGGAAGTAAAAAGAAAAGGTGGGGGTATTTTTATAATTTAAGTGTAAAACAGTAACTGTACTACCGT GGGTCAGTTACGAAACAACCCACAGTAGACGCAGCCCCAAGTTTGACTTCTCCTTCCTCATCATCACTCCAAGTAGCTAC TACTTTCTTTTCGATCCTTGCCTCCTCTCTATTTGTTGCAATGTGACAAAACACCCGTAGCAATCTAATAAGACCACCCA CACATTTCTTACAACCCACTTGTTTCCTCACCCTAATTAACAAACTTACAAAGCACTTGCTTCTCTTCCTTCTTCTTTCC CACCTCATCTTTTATTGTTTGGTTTCCCATCTTTTTCCTTCCATCCTAACATGTCCTCCTCTCACTCAAACTCATCTACT TCCACTCTCTTCTTGCTCTCAATAATCCTTCTCTGTTTTCCGGGCACAACAAGATCCGACAACCCATGCGCATATCCATG TTACCCTTCACCACCAATCGTTGGCGGCACCACTCCTACAACTCCTTCAGGCTCAACTACACCACAGACACCGCCACAAA CCGGGTTAACATACCCACCACCTTCAGGGTATTACCCTTACAACCCAACACCCCCTTATGGCGGCGGTGCCGGTGATGGT AACAGCGGAGGTGGTGCTGGTGGTGGCAGTTTTGGCACCCCACCACCCCCGGATCCTATTCTACCTTATTTTCCATTCTA CTACAGAAAGCCTCCTCACCAGACAGAAGATCAATCTTCAGCATCAACTACTTTGGTGAAATGGACAGGGATGATTTCCA CTACTACTACTTCTCTATTTTTATCTTCACTTCTTTTTGTCTAAATCTAATTCATGTGATCAATCTTAATGTAGCCGAAC ATTATTATTCTATTTTCTTTTGCCAAACAAGAATATAGTGCTTGTTTACTTCATAGTAATTTATTCTAGTTTGTTCATCT ATAAAAGTTAACGTTGTTTAAATGATTGTAATTTGTAAGTAAAATTTTGGTTAAATCATCATAGTCTTTAAGATATGTGT GTTAAAAATCGAACTTTACCTAAAATCATTTAAATAGTTGTTAAATATACGTGTGTTTCTCCGAGGATGGTAAAAGATGA GAAGATGAGGCACAGAAAAGGTTAGTAGAATTTTGATGTTGAAGAGCTTGTTAGAAAAATAAGATTCAAAGACAAAAAAG ATTGGAGGTATAAATTTAGCTTGGTATTCGTAATGTAAATTTAAAAATTTGATTACTTTCAAAAAAAAAAATAATTGATC AAAGTGTCGTTGATTTTGAGCATTTTTTTTCTTCGGTGCCGTCCCGTATATCATTACGACACTAGCATCACCTACTTTGG ATGGTTGTGCATTTTCGGCTGTAAGCACTTTTAATTTATTTCTTATTTTTCCTTCACTTTCTACCTTATTGCTATTGCGT TTACCTTAATTTTATATATGATCAATCCCTCTCATGTGCCAAAAAGTAAAAGCAGAAAAGTATGATGCTTTAATAGAAAA GATTTCTAAAATTAAGTCCAGCTTTTTGTTAAAAAATTAAGCTCCGTACACCTAAAAATATAGGATTTGAAACCATAATT TCATCTTGTAAATCAATAATGTATAGATGCATGGTATGTTTGGGAACCATCTTTAAAGTACTTTAACTTTCATAGGAATG CAGGATGCGGCTTTTCAAGAAGAAGAAAAAGTGAGAAAACGTGAAAGCTAGAAAATTGTCTGGGAACTTTTCATATGAAT GTAACTTTAAACAACAATAAGGATAGGTGAACATAAAGTGATGGACATCCAATAAACATGCATTTGTGACGGTTTGTAAC CCTGCAAACATTTGTATAACAATCTGTATGTATGAAGGATGTTGCTAATTTTCAGATGTTCAGGTATACTTAAAACAAAA CATACACGTCCCTCATGATAGAGAATCCTTTGGTGGCGAGACTTGCAAGAATTTTAATCAATGAAAGTGAGAATGTTAGA AAGGGCCTCAAAGATCCGTTGCAGCTCATTAGTTCTAGATCTGTTGCAGTGCTGCAACTCTTTGGTCAAGTTGCGTCGAC GTCCTTGTCTCTACCAGACACTGATGGCAACTCTTTTAGTAATCCCGGGAGAGCTAGGCTTGAGGGAGTGGTTCGTAATT CCCTTGGGGTTGGGTTGTTGGCTATTCTTACTTGCCGGGGGTAATAGCAATTTTGGAGGCGAAGCTGGTTACTGTCCTTC ACCGTCTGCAACATTATTGAGATCTTGGGTTCCGACAGATTGTGTCGCATACAGACTCAACCTCGGTGCTTCATCTTCTC TAACAAAGTTGGTTAAGGTTCCACCAGTATGCGGCTATTATTGGTGCTATTTGTGGCCTTCTTAGGCAAAATTGGAAGGT TGTGTTGCGTCATACTCTTCGAGAGGGAAATGTAGTGGCTTGTTGGTTGGCTAAGCATGGGGTGCTCTCATAGGATGCTT GTGTTTTTTTATCACCCTCCTTTGGGGATGAGCTCATTTTTGTCAGCAGTCTCTAGGGGATCCTTCTTTCTTAGAGGCTA GTTTGCTTGTTGGCCGTTTTGTTTTTTCCTAACAAAAATATATTTTTCTCAATATATATTGTTTTTGGTCCAATCAGCAA TTTTTTTTCTGAAGCCATATTATTTGATAAAAAATTGCGGGCCAAATCTTGATTCAGATTTCTGGCCCAAAAAGAAGATC CTGGGTCACCCATGTACACTATATTGTGTCACCCACATACTGTGTTGGGAAAGGTTAAACCTAGCCGCTACCCCTTGCGT GGGTTTCATTTTGGTGATGCTTTGGTTATCTTTTTTCCCCTAAAGCTTAGTGATAGCAGCACACAGTTGATTTTGCTTTC TTGACTGTGAAAGAACACTATAGAACTCTGTTCATAATTGTGAATTTGTTGCATCTGTAGGTTTTATGCATTAGATGTTA CTTGCTGTCTGATTTTACTTTACAGTTTGCTTTTTGTGTAATGGTCATGGTCATGGTCTTAAAAAGTGCAAGTGCGAAGA TAGAGCATGTGATGCTTTTACACTTGATCTCTGAACTTCAGGTAAGTTCTTATGTTGACAAGCTCATTAACTGATGCTTT TCTTCGCACTTAATTGTGAATTTGTTTTGCCGTATGTTGTGCTTCTGAGTCATCTAAACAAGTCCTGTGATTATGAAAGA GGCTAGTTAACAGTTCATGAAGATACTTAACATATTTCTTTTTCAATCAAATTTTTTAACTTCATTTTTTTTCTTAGTCT AAGTGGCAAATTTGGTACCGGGCGTGCCTTGTGATTGTTCTGTGAATTCATCTTAGGGACATAGCTGCAACTGACATGAC ACTGACGTGAGTAGCTCTATGAATTTATGCAATTATGAGTTACTAAGTTGTTAGATGTTAAAATTACGAGCTGAAATTGC TCAATGGTTGCAACTTCTCCATCTGCTAAATTGTTGATTAGTTGTATAGGTGTTAAGCCAAAATTACAAGCATTACAATT ATCGACACCATGGTACAAAAAGTGGTTTTTCGACAGAAGGGGTTGGGCGAAGCCGGCAACTCAGCACACGATGTCCCTCA AGGACAAGTTAGTAAAAGCCATAACTCGACACACTCAGAAGATGAAGAAATCTCGATCACCTTAATGGAAGAGGCAGTTA CCGAATAACAAGCGAGTACGAGCACGTGCATACACCCACGATGCCACGAATAGCAACGGTTGCCCACGACTCAGAACCAT CCACGTGGCAATAGAGTCACGTGCGCGAAGACCATCGGCTAAACGTCGGGTATGGCGCCAAAATTCAAAACCCACGAAGC CATCGTGCATCCAAGGAAAACCGCCAAGAACATGGGCAGAAAGAACAATATAAATAAAGGAAGCAGCAGCAGAAGAAGGG GTTCCCAACTAAAAAACTCTGAAAATTCACTAAAAGCTCTAAACGTCCGCATCAATGAGACTTCGAGAGCAGAAC
CDS sequence (LotjaGi4g1v0078900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCCTCTCACTCAAACTCATCTACTTCCACTCTCTTCTTGCTCTCAATAATCCTTCTCTGTTTTCCGGGCACAAC AAGATCCGACAACCCATGCGCATATCCATGTTACCCTTCACCACCAATCGTTGGCGGCACCACTCCTACAACTCCTTCAG GCTCAACTACACCACAGACACCGCCACAAACCGGGTTAACATACCCACCACCTTCAGGGTATTACCCTTACAACCCAACA CCCCCTTATGGCGGCGGTGCCGGTGATGGTAACAGCGGAGGTGGTGCTGGTGGTGGCAGTTTTGGCACCCCACCACCCCC GGATCCTATTCTACCTTATTTTCCATTCTACTACAGAAAGCCTCCTCACCAGACAGAAGATCAATCTTCAGCATCAACTA CTTTGGTGAAATGGACAGGGATGATTTCCACTACTACTACTTCTCTATTTTTATCTTCACTTCTTTTTGTCTAA
Protein sequence (LotjaGi4g1v0078900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSHSNSSTSTLFLLSIILLCFPGTTRSDNPCAYPCYPSPPIVGGTTPTTPSGSTTPQTPPQTGLTYPPPSGYYPYNPT PPYGGGAGDGNSGGGAGGGSFGTPPPPDPILPYFPFYYRKPPHQTEDQSSASTTLVKWTGMISTTTTSLFLSSLLFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 156 | 151 | 2.6E-41 | – | |
| PANTHER | 6 | 156 | 151 | 2.6E-41 | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 29 | 6 | - | – | |
| Phobius | 30 | 157 | 128 | - | – | |
| MobiDBLite | 46 | 108 | 63 | - | – | |
| MobiDBLite | 47 | 62 | 16 | - | – | |
| MobiDBLite | 63 | 78 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0078900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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