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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0079300 |
| Transcript ID | LotjaGi4g1v0079300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT1G71000.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q5SLW9|DNAJ1_THET8 Chaperone protein DnaJ 1; TrEMBL-Plants: tr|I3S4X4|I3S4X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0079300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10340853..10342518) extracted from Lotus japonicus Gifu genome v1.2.
CACGTTCTGTGGTCACCACCACCCTTCTACGTGTCTCTGATTCTCAAGATATTTTTTTTCCTGTCAAGTTAAATCCTCTA GAGCTTTCACTTCCTAATTAACCGCCATAAACTCATGATCATAATTTATAAATAGCACCTTATGCTAGAGCATTCCCTTG CTCACCAAACCAAAGTTGGGTGCAATTATATGTCACACTAATCAAAGGTGAAAAATAGAGTATTTCATTATTTCAATGGT TAGAGTTTGATTTTTTGGATAATGGATGCGTGCAAAGAAGAAGGGTTATCTTCATCTTACTACACCATTCTTGGTGTTAG TTTAGATTCTTCAGTTGATGAGATAAGACGTGCTTATAGGAAACTTGCAATGGTTAGTTTTTTGTTTTTTTCACTTGAGG GCATGTTTCTTGTTTTGGATATGTGTGTATTGAATGCAAAATGTTTGTGTAAATGCTGCAGTGATGTTTTTGGTTTGAAT TTGAATGCATGATGCTGATTTTGAGTGTGGTTATGAATTCAATGCAGCAATGGCATCCTGATAGGTGGACGAGAACACCT TCTTTGCTTGGTGAAGCCAAGCGCAAATTCCAGCAAATTCAAGAAGCCTATGCAGGTATGGTTCTTGGAATTGTTGTTTC GTATCTTGAAATTTTTGGTTTTGGTTTAATTTTTCCTTTTGTGATATTGATGTGATTGAACTTTGCTTATCTATCTGGTG CAGTGTTATCTGACCCCAAGAAAAGAACGATGTATGATGCTGGTTTGTATGATCCTCAAGAGGAAGAGGATGAGGTGAGT GTATTATTTTACAGATTTATATTTCTTTTATGCAGTTCAAGATTTGTTTCTTTTCTCCTATGGTTCATTCTTTGTGTTAT GGTCATGAAAAGCTTGTGCTTATTGTGATCCTCTGCTTTCAGGGCTTTTCTGATTTTGTAGAAGAAATGGCATCTCTCAT GGCACAAGTGAGGAATGAGGTATGATTGTGGAGTCTTCGAACTATGAAGGATCATCTTCTTGAATCAATGTTGGAATTTC AGGTTGTGGCATTAAGGATTTAGTGAAAATAGTGTATAAGTAAACACTACTCATAATTTTTGTGTCGATTGCAGGGGAAG GATTATGGTTTGGAGGAATTGCAGAGCATGTTGATGGAAATGGTTGAAGAATTTGAGTCTCCTTCAATGTACTCTTGTGA GGTACCATCAGTGATTGATGAATCCCAGTGCTCGAAGAGGATGCGTTTCGAGTTCGACACAACCATGGAGAACAAGGGAT CACATTTTCAAGTGCCGGGTCTTAACTTCTATGAAACAAGAGGATACTGTAATTAGCTGTTTCACTTTGCTTTTTCTTTC TAAGCAGAATGCTAATTTGTAAAACTTGTTTTTTTTTTTTTTTGTCATTGAAGTTTAGGGGATATGAATTGGGAAGATTT TAGACACACATTGATTGGTTAGCTGGTAGAATTTTATGTTCATCAATGAGTTTATCCTTCTACGGCGTTGTGGAGATTTT TCTCTCTCTCTCTCTTTATAATGATATTTGGAGTGCTTCTGTTAGTAACGTTTCTGTTATCATTTGGAAATAGAAGTAGG TAGTTCTTTTATATTATGGCTGTGGATATACATTTGGCTGGATAAACCTTGGAATCAGGGGTGTTC
CDS sequence (LotjaGi4g1v0079300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCGTGCAAAGAAGAAGGGTTATCTTCATCTTACTACACCATTCTTGGTGTTAGTTTAGATTCTTCAGTTGATGA GATAAGACGTGCTTATAGGAAACTTGCAATGCAATGGCATCCTGATAGGTGGACGAGAACACCTTCTTTGCTTGGTGAAG CCAAGCGCAAATTCCAGCAAATTCAAGAAGCCTATGCAGTGTTATCTGACCCCAAGAAAAGAACGATGTATGATGCTGGT TTGTATGATCCTCAAGAGGAAGAGGATGAGGGCTTTTCTGATTTTGTAGAAGAAATGGCATCTCTCATGGCACAAGTGAG GAATGAGGGGAAGGATTATGGTTTGGAGGAATTGCAGAGCATGTTGATGGAAATGGTTGAAGAATTTGAGTCTCCTTCAA TGTACTCTTGTGAGGTACCATCAGTGATTGATGAATCCCAGTGCTCGAAGAGGATGCGTTTCGAGTTCGACACAACCATG GAGAACAAGGGATCACATTTTCAAGTGCCGGGTCTTAACTTCTATGAAACAAGAGGATACTGTAATTAG
Protein sequence (LotjaGi4g1v0079300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDACKEEGLSSSYYTILGVSLDSSVDEIRRAYRKLAMQWHPDRWTRTPSLLGEAKRKFQQIQEAYAVLSDPKKRTMYDAG LYDPQEEEDEGFSDFVEEMASLMAQVRNEGKDYGLEELQSMLMEMVEEFESPSMYSCEVPSVIDESQCSKRMRFEFDTTM ENKGSHFQVPGLNFYETRGYCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 101 | 99 | 1.2E-27 | ||
| PANTHER | 9 | 175 | 167 | 3.3E-75 | – | |
| PANTHER | 9 | 175 | 167 | 3.3E-75 | – | |
| SMART | 11 | 73 | 63 | 5.5E-26 | ||
| ProSiteProfiles | 12 | 81 | 70 | 20.099 | ||
| SUPERFAMILY | 12 | 84 | 73 | 1.15E-25 | ||
| CDD | 13 | 70 | 58 | 6.86892E-23 | ||
| Pfam | 13 | 78 | 66 | 1.9E-25 | ||
| PRINTS | 14 | 32 | 19 | 1.2E-17 | ||
| PRINTS | 32 | 47 | 16 | 1.2E-17 | ||
| PRINTS | 53 | 73 | 21 | 1.2E-17 | ||
| ProSitePatterns | 58 | 77 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0079300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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