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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0079600 |
| Transcript ID | LotjaGi4g1v0079600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plastid movement impaired protein; TAIR: AT2G01340.1 plastid movement impaired protein; Swiss-Prot: sp|Q6NLC8|Y1648_ARATH Uncharacterized protein At1g66480; TrEMBL-Plants: tr|I1ND67|I1ND67_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0079600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10417879..10420357) extracted from Lotus japonicus Gifu genome v1.2.
AATTTGTCTGTTTTTTAAAGTATGCCTTCTTTATTGACCAAAGACCCCCCAAAATCTGGAACCACTATAAATTCATCCAT GTCCCTTGCATCTCCACCATTTCACATACTTTTTCTCCTTAATATTAGTTGCTTGTGAGAATTACCCGGAACAAGAAATT GCCTCAACTTTCAGGGCTATTTAATTTTCTGCCCTCTTTATTAGTACTCCTCACACACACAAAAAACAAAATCTTGCAAA CTTCGGGTATTACTCATGGGCAACACTTTTGGTTCTAAGAAGACCACAAAGGTCATGAAAATAGATGGCGAATCATTCAA GCTGAAAACGCCAGTAAAAGCTGGTGAAGTGCTTAAGGATCACCCGGGTCTCGTTTTGCTTGACTCAGAGGCGGTCAAGC ATTACGGGACACGGGCGAAGCCTTTGGAAGCGCATAAGGAGTTGCATCCAAAGAGGCTTTATTTTCTCGTGGAGCTTCCA AAGGAGACGAAGCCGAGAAGGGTTCGTTCCGGGATTAACATGAGTGCGAAGGACCGGTTGGAGAGTTTGGTGCTTACAAG GAGGTCTGCTTCTGATCTTTCGATCATGAAACAACGCGATGTTGATGGTGGTGGTGGTGGTGATAGTAAGGAGGAGAGTG TTGGTGGTGGTGTGAGGTTGAAGATGAGGCTTCCCAAGGCGGAGGTGGAGAGGTTGATGCGGGAGTGTAAAGATGAGGCA GAGGCGGCAGAGAAGATTATGAGTTTGTATAAGGCGGCGAGTGAAACAGCGGAAAATGGTGGAAAGGAGAGTACAAAGGC AGTACGTGAGGTTTGTTTTCTAAACTGATTATTAATTTTTTATCATAATCAATTCTGAAACTCAAAAGTTAATCATAAAA ACTGTTTTCTCATGATTGATTTTAACTCCATATTCAATTGTAAAAGAATTTCTAAAAATGTATTAGTGTATAGCTTTCTT TGTGTCATGGTCATTGCTCTTGTTTAAAGCTTGAGTTTATTATTAACCATTTTTCTGTTGTTAAATTTTAGGATCCTCTT TGGATTTGTTAAACCATGCAATTTCTTAAATCATAAAGATATTCAATGTTTTTGTTAAGCAGAGTTATTCCATTCAACCC TTGCGTCATATGCATATCATTAAATTCTTTGTGAAAAATATTATTGGAATATTAAGTGTGACCTTTGGTTTGCAAGAATT TGGTAGTGATAGAAAATACAAGAGGGGAGGAATAGCTTAATTAGTGGTCCTAAACTGTTAGCCTTCGATTGAATTAAAGG CCAAGTATGAAGTTTCAACTTTAATATGTTTATCTACTTTCAGAGGCAACAAGTTCAAACTTTTGTCCTTCAAATTTTGT ATTGATAATTTCACCCAAATAAATTAAAAAAGGAAAACATAGACAAAGTAGCTGAGATACAGAGAAGGGTCACAAACAAG CATAGATGGGGCTCAATCAATGCTTTTATTAATAGCAGGCAACAACCAGAAGAGTTTAGACATATTAACATATAGCTTGA CTTGTCCCTTCAGAACTTGGAGAAGAGATCCCATGTCATAGCACTCTGGATCGATCTTCATGATCATATTAAATTGCATT GAGATGTGAAATATTCAATGCTTTTTCTTTTTTATTTTGTTGATTCTGCTCAGCATGTTGTTGCACGCTCTATTGACTTA GAAAATTTAGTTGACTAATTTATTATTATATTTATGAAGTTTGAATATGATGTGTGCCTATCACAACCTGTTTAATTTGT ATTGACTAACTGTTTTTGTGGAATTCAAAACATTTGCAGAAAAGGGTGAGTTTCATGCCAATCAATGAAGGAGGAATTCA AGTGGCTGTGGCTTCATAAACATTTACAACACATTATCCATGAAGCCAAACATTGAATATCCACAGATGGAGCATTCTTA CACTTAGTTAAATAAGAGTGATGTTATTTATTTATACTATAGATAGGATCCTAACTGGTCACTGTTATATACAGGTTTTG TATATTAGTTTCATTATAGAACAGAGGAATCTTTATTTCTTTAGTAAATTTTGTTGCTCCGTTTGTGCCTTGTGGTGACT AGTTGGAAAATGGGAACCTATGTGTTGGATATATAACTAGCACAACTCCTATAATGATACATATGTACATATTGGGGATA TCTGTATCCTTATGTTGAGACGACACATTACTAATGAAGGACTGCTAGTACCAATATTTATTGTGTGCTTTTCCTAGTTC ATTGTTTAGTATGATAACTTAGTGTGTGTTTGGAAAACCCATTCAGGATCCACGTTTGGCCCCGATCCACGTTTGGCCTT TCCAGATTTGAAACCATTGTTTGGTTGTGCGTCTCAAACGCGGATCTGAGTCTCAAATCGGATCTGAGGCTGTAACGTGG ATCATTGATGCAAAGTTGATGTTTGGCTACTCGCGTCCGAGAACCGATTCAAGGAGGGAACGTAGATCTGGCTGAAGCA
CDS sequence (LotjaGi4g1v0079600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAACACTTTTGGTTCTAAGAAGACCACAAAGGTCATGAAAATAGATGGCGAATCATTCAAGCTGAAAACGCCAGT AAAAGCTGGTGAAGTGCTTAAGGATCACCCGGGTCTCGTTTTGCTTGACTCAGAGGCGGTCAAGCATTACGGGACACGGG CGAAGCCTTTGGAAGCGCATAAGGAGTTGCATCCAAAGAGGCTTTATTTTCTCGTGGAGCTTCCAAAGGAGACGAAGCCG AGAAGGGTTCGTTCCGGGATTAACATGAGTGCGAAGGACCGGTTGGAGAGTTTGGTGCTTACAAGGAGGTCTGCTTCTGA TCTTTCGATCATGAAACAACGCGATGTTGATGGTGGTGGTGGTGGTGATAGTAAGGAGGAGAGTGTTGGTGGTGGTGTGA GGTTGAAGATGAGGCTTCCCAAGGCGGAGGTGGAGAGGTTGATGCGGGAGTGTAAAGATGAGGCAGAGGCGGCAGAGAAG ATTATGAGTTTGTATAAGGCGGCGAGTGAAACAGCGGAAAATGGTGGAAAGGAGAGTACAAAGGCAGTACGTGAGAAAAG GGTGAGTTTCATGCCAATCAATGAAGGAGGAATTCAAGTGGCTGTGGCTTCATAA
Protein sequence (LotjaGi4g1v0079600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTFGSKKTTKVMKIDGESFKLKTPVKAGEVLKDHPGLVLLDSEAVKHYGTRAKPLEAHKELHPKRLYFLVELPKETKP RRVRSGINMSAKDRLESLVLTRRSASDLSIMKQRDVDGGGGGDSKEESVGGGVRLKMRLPKAEVERLMRECKDEAEAAEK IMSLYKAASETAENGGKESTKAVREKRVSFMPINEGGIQVAVAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 6.4E-95 | – | |
| PANTHER | 1 | 204 | 204 | 6.4E-95 | – | |
| Pfam | 1 | 174 | 174 | 2.8E-21 | ||
| MobiDBLite | 112 | 131 | 20 | - | – | |
| Coils | 141 | 168 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0079600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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