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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0080600 |
Transcript ID | LotjaGi4g1v0080600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0080600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10492185..10495307) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATAGAGAATGTATCATTTGCTTCATTGTATCCCAACATCCCATAGCTGAATTGTTAGAGAGAATATACACCACAAT AAGCAATTCAACGTGAATTGCTATTAGAGAGAAAAATTCCAGGAGGAAAATATTAGTGTTTCCCTTGGTGAGGTTCTCCT AGTGAGTGTTTTCTTGTTCTATAGAGCTGTTGTAATTTCTTCCACATAGTGAAAATCTTTTCTACCGGTGCCCGTGGTTT TTCCCTTATCTGTTGAGGGTTTTCCACGTAAATATTGTGTGTCAATTTCCTACTCTCTCATCTCTAATTTTAGTTGCGTG ATATTATCCTGCTACTCTGGTACCCAACAGTGGTATTAGAGCTTGGTTGGTGTCGGTCCTTATTCCGCTGCGGTGTACGG TTACTATTCACACGTGTGGTTGTATACTTTTGCAGTGATTGTTAACCTATACTAGATCTATTCTAGTGTGCGGTAAAAAT ATACAATACTTCTCACGTATACTGTGCTATTCACGGTGAAATTGTGTAAACCGGTTCCGTGAAGGAAAAAAAAAATGGCA GCAAAATTTGAGATCCCGAAATTCAATGGGAGTAACTTCTCCCTGTGGAAATTGAAGATAAAGGCGATCCTGAGGAAGGA TAATTGCTTACCAGCAATTGATGGTAGACCTGCTGATATAACTTATGATAAGTGGAAAGAGATGGACGACAATGCTGTAG CCAATTTGCACCTAGCAGTGGCAGATTCAGTTTTGTCTAGTATTGCTGAAAAGAAAACAGCAAAGGAGATCTGGGATACT CTTATCCAACTGTACGAGGTCAAGTCACTTCACAACAGAATTTTCTTAAAGAGGAGACTCTACACTCTTCGATGCCGGAT CACATCAACAATCTGAACACAATGTTTGCTCAACTATCTGCATCAGATTTCACAATTGGAGAAAATGAACGTGCAGAGGT TCTTCTTCAGAGTTTACCAGATTCATATGATCAACTCGTCATCAATATTACAAACAATAATATTGTTGACCGTCTATCCT TTAATGATGTTGCCGGAGCTATTCTTGAAGAAGAGTCCAGGCGAAAAAATAAGGAAGATCGTCAGGAGAGCTCAAAACAA ATGGAAGCTTTGACGGTGACGAGAGGCAGATCAACGGAGTGTGGCCGCAGTGGGAGCCAGAACCATGGTAGATCAAAATC TCGAAGAAAGATAAACCTCAAATGCTACAATTGTGGCAAGAGAGGGCACTTGAAGAAAGATTGTTGGTCCAACAGGAAGA GTGGTGAAAAATCTTCTGAAGCAAGTACATCTCAAGGATGTGTTGCTAGTACCTCTGATGATGGAGAAGTCCTATACAGC GAAGCAGCAGTTAGTACCAAAGGCAAAAATCGTCTCACTGATGTTTGGATAGTAGATTCAGGAGCAACATGGCACATGAC CCCACGACGAGATTGGTTTTGCACTTATGAGCCTGTCTCAGAAGGAAACGTGTTCATGGGAAACGATCATGCCTTGGAAA TTGTTGGAATTGGTACTGTCAAAATAAAAATGTATGATGGTACCATTCGCACACTTCAAGAGGTACGACATGTGAAAGGG TTAGCAAAGAATTTGTTGTCTGTTGGGCAACTAGATGACCTCGGATACAAGTACGATATTCAAGGTGGGATCTTGAAAGT GGTGAAAGGTTCGCTAGTAGTAATGAAAGCAAAGAAGGTCGCTGCAAATCTATACATGCTTTTGGGAGATACGTGGCAAA TGGCAGACGCATCAGTTGCAGTTGGAAGCCAAGAAGAAACAACGATGATGTGGCACCGCAGATTAGGCCATATGTCGGAA CGAGGCTTGAAAGTTCTTGCAGAACGTAATCTCATCCCTGGGCTCAAGTCAGTAAGTTTACCTTTCTGTGAGCATTGTGT GATAAGTAAGCAGCATAGACTAAAGTTTGCTAAGTCAACTGCTAGAAGCAAACACATACTGGACTTGATTCATTCTGATG TGTGGGAGTCACCGGAAGTATCCATAGGAGGAGCAAAGTATTTTGTATCATTCATTGATGATTACTCCAGGAGATTGTGG GTGTACCCGATCAAGAAGAAGTCAGGTGTGTATTCAGTATTCAAGGAGTTCAAAGCACAAGTGGAACTTGAAACTGGGAA AAGAATTAAGTGCTTGAGGACAGATAATGGAGGAGAATATACAGATGGTGATTTCCTGGCATTCTGCAAGCAAGAAGGTA TTACGAGGCAATTTACAGTTGCTCATACACCTCAGCAGAATGGAGTAGCAGAGCGGATGAATAGAACTCTTCTGGAGAGG ACAAGAGCTATGCTGAGAACAGCGGAATTAGGCAAGTCCTTCTGGGCAGAAGCTGTCAAAACTGCCTGTTATGTGATAAA TCGATCGCCATCAACTGCGATTGATTTAAAGACACCAATGGAGACGTGGAAGGGAAAACCAGGTAATTATTCTTCTCTAC ATGTGTTTGGATGTCCTGTGTATGTAATGTTCAACTCCCAAGAAAGAACAAAGCTGGATCCAAAATCCAGGAGATGCATA TTCGTGGGTTATGCTGACAATGTAAAGGGGTATCGTCTGTGGGATCCCGCTGCCCACAAGATTATTGTCAGCAAAGATGT AATCTTTGTAGAAAATGAATTACAAAAGGAGCAGAAAAATGATGACACTACAAAGGAGACTGCTACAGTGGAGATAGAGG AAAAGTCAGGAGGAGATGATTCTTCTGAAGCAGAGCCAGAGCACGAAGAACAAGAACCAAATGAGGTCAATGATGAAGAA CCCAGGAGAACGACACGTCAAATAAGAAAACCATCATGGCACTCAGAATATGTGATGGCAAGTCATGATGCATATTGTCT TCTATCAGAAGATGGAGAACCATCAACCTTTCAGGAGGCGTTAAATGGTTCAGATGCTTCTCTATGGATGGCAGCAATGC AGGAGGAGATTGAAGCCTTACATAGAAATAATACTTGGGAACTTGTTGAACTTCCTAAAGGTCGGAAAGCCATTGGCAAC AAATGGGTGTTCAAAATTAAACGAGATGGCAACAATCAGGTGGAACGCTATCGTGCAAGACTGGTGGTCAAAGGATATGC TCA
CDS sequence (LotjaGi4g1v0080600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAAAATTTGAGATCCCGAAATTCAATGGGAGTAACTTCTCCCTGTGGAAATTGAAGATAAAGGCGATCCTGAG GAAGGATAATTGCTTACCAGCAATTGATGGTAGACCTGCTGATATAACTTATGATAAGTGGAAAGAGATGGACGACAATG CTGTAGCCAATTTGCACCTAGCAGTGGCAGATTCAGTTTTGTCTAGTATTGCTGAAAAGAAAACAGCAAAGGAGATCTGG GATACTCTTATCCAACTGTACGAGGTCAAGTCACTTCACAACAGAATTTTCTTAAAGAGGAGACTCTACACTCTTCGATG CCGGATCACATCAACAATCTGA
Protein sequence (LotjaGi4g1v0080600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKFEIPKFNGSNFSLWKLKIKAILRKDNCLPAIDGRPADITYDKWKEMDDNAVANLHLAVADSVLSSIAEKKTAKEIW DTLIQLYEVKSLHNRIFLKRRLYTLRCRITSTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 107 | 104 | 2.3E-23 | – | |
Pfam | 47 | 111 | 65 | 1.8E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0080600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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