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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0081400 |
| Transcript ID | LotjaGi4g1v0081400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim17; TAIR: AT2G37410.1 translocase inner membrane subunit 17-2; Swiss-Prot: sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2; TrEMBL-Plants: tr|I1ND97|I1ND97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0081400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10633247..10633900) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAACTCCAGAGACTTCTAGGGAACCGTGCCCCGATCGCATCCTCGACGACATCGGCGGCGCGTTCGGCATGGGCGC GGTGGGCGGCTCCGCCTTCCACTTCCTCAAAGGCCTCTACAACTCCCCCAAAGGCGACCGTCTCCTCGGCGCCTCCCAAG CCGTCCGCCTCAACGCTCCTCGTGTCGGCGGAAGCTTCGCCGTCTGGGGTGGCCTCTTCTCCTCCTTCGACTGCACCATG GTCTACCTCCGCCAGAAAGAAGACCCCTGGAACTCCATCTTCGCCGGCGCTGCTACCGGCGGCTTCCTCTCCATGCGACA AGGCCTCACTGCCTCCACACGCGCTGCGGCTTTCGGCGGCGTGCTTCTCGCTCTTATCGAAGGTGCGGGGATCATGCTCA ACAAGTTCCTCAGTGCTCAGCAGCCCATGCCTATGATCATCGATGAGCCTATGCCTCCGAACGGGTTGCCGGGTCTGCCG GGGATGCCTGTTCCTCCTCCGGGGGCGGATCCTGCGCCGCCGCAGAATTCGTGGTTCGGTGGTGGGTGGTTTGGGAAGAA GGATGAGGTTGCAGCTGGTGGTGATGGAGGAAGTGAGACCAAGGTTTTGGAGAGCTTTGATGCCCCTCCTGTGCCCAATT TCGAGTACAAGTGA
CDS sequence (LotjaGi4g1v0081400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTCCAGAGACTTCTAGGGAACCGTGCCCCGATCGCATCCTCGACGACATCGGCGGCGCGTTCGGCATGGGCGC GGTGGGCGGCTCCGCCTTCCACTTCCTCAAAGGCCTCTACAACTCCCCCAAAGGCGACCGTCTCCTCGGCGCCTCCCAAG CCGTCCGCCTCAACGCTCCTCGTGTCGGCGGAAGCTTCGCCGTCTGGGGTGGCCTCTTCTCCTCCTTCGACTGCACCATG GTCTACCTCCGCCAGAAAGAAGACCCCTGGAACTCCATCTTCGCCGGCGCTGCTACCGGCGGCTTCCTCTCCATGCGACA AGGCCTCACTGCCTCCACACGCGCTGCGGCTTTCGGCGGCGTGCTTCTCGCTCTTATCGAAGGTGCGGGGATCATGCTCA ACAAGTTCCTCAGTGCTCAGCAGCCCATGCCTATGATCATCGATGAGCCTATGCCTCCGAACGGGTTGCCGGGTCTGCCG GGGATGCCTGTTCCTCCTCCGGGGGCGGATCCTGCGCCGCCGCAGAATTCGTGGTTCGGTGGTGGGTGGTTTGGGAAGAA GGATGAGGTTGCAGCTGGTGGTGATGGAGGAAGTGAGACCAAGGTTTTGGAGAGCTTTGATGCCCCTCCTGTGCCCAATT TCGAGTACAAGTGA
Protein sequence (LotjaGi4g1v0081400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFLKGLYNSPKGDRLLGASQAVRLNAPRVGGSFAVWGGLFSSFDCTM VYLRQKEDPWNSIFAGAATGGFLSMRQGLTASTRAAAFGGVLLALIEGAGIMLNKFLSAQQPMPMIIDEPMPPNGLPGLP GMPVPPPGADPAPPQNSWFGGGWFGKKDEVAAGGDGGSETKVLESFDAPPVPNFEYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 2.5E-104 | – | |
| Phobius | 1 | 65 | 65 | - | – | |
| PANTHER | 1 | 217 | 217 | 2.5E-104 | – | |
| Pfam | 16 | 122 | 107 | 9.5E-27 | – | |
| Phobius | 66 | 83 | 18 | - | – | |
| Phobius | 84 | 89 | 6 | - | – | |
| Phobius | 90 | 109 | 20 | - | – | |
| Phobius | 110 | 114 | 5 | - | – | |
| Phobius | 115 | 137 | 23 | - | – | |
| Phobius | 138 | 217 | 80 | - | – | |
| MobiDBLite | 166 | 217 | 52 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0081400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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