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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0081600 |
| Transcript ID | LotjaGi4g1v0081600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytanoyl-CoA dioxygenase domain protein; TAIR: AT2G01490.1 phytanoyl-CoA dioxygenase (PhyH) family protein; Swiss-Prot: sp|Q9ZVF6|PAHX_ARATH Phytanoyl-CoA dioxygenase; TrEMBL-Plants: tr|I3SR87|I3SR87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10655010..10657994) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCTACTTAGTTCTGATCAACTCCAATTCTTCAACTCTCAAGGTGACACCCGTTTTGGCTTCAATTTTCTACCCTT TTGAACGTAATCAACTTTTTTTGTACTCACTCTATCGACCAATCAAAATTTCAGGTTATCTTGTGATTGAATCGTTTGCT GGTGAGGATGAGATTGAAGGCATGATGAAGAGGATGGAGCAATTAGTGGATAACTTTGATCCTTCTTCCACCGCCTCTAT TTTCTCCACCAAGAACCAGGTTTATAATATGTTCTTTTCTATCTTATTTTCTTCGAAGTTTTCATTTTTTAAGGTTTGAG TTGTGTTGTTTATAATATCTGTACTGTTTTTCAGCAAAAGTTGACTGATGATTACTTTTTCGATAGCGTGGAGAGAGTTT CGTTTTTCTTCGAGGGTATTGAACAAAATTTCATCTTTTTTATGTTTTGTACTAGTAATCTGTTGGGTTCCTTTAAAGTT GAATTGTTTTTTGCCTTTTTGTAGAGAAAGCATTTGGAAATAATGGTGACTTAAAGCAGCCGAAGCAACTATCCATTAAT AAAGTTGGCCATGGTAAGAAAGCCTTGAATATTCTGATACTTCTCCAGGAATTAGAAATTGGTGTAGTCTTTGTTCAAAC TATATGTAGTTGAAATTGGGTGCGTTTTGGTTAACAACTTAATACAGCGCTAATCCTATAAACACTTATTCATAAGCTTA TTTAAGGAACTTATTGAAATAAGCTGAAAATAGCTTATGAATAAGCACCGGCTCTTATTCATAAGCTAATATGAACAATT TTGAAAATAAACTCAAAATAGCTTATGAGTAGGGCATAATCTCTTTACATAAGCTCTCACAAGTACTTATATAAGCGTTT CTGCCATAAGTTAAGGTCAAGCTCTTCCAAACGAAGCCTTCATTAGTTTCGGCAAAGTGTGTGAACATGGGGGCACTGCT TTCTATGTTCAAACTATATGTCGTTGTATTAAATTGTTGGCTTTGTCCATCGTAGACCAAGAAAAATCTGGTTCGCAAGT TAAATAAGCTTCTCTGCAAATTAATTTTAGCATATCAGAAGCTTAATATAAATAACATGTACTGATTGTTAATAATTGAC TAGTTTTTAATATGATCCATCATAGAATTACCTTAGTGTGTTCAGGAAATATGTGTGAACATAGGGGCACTACTTTTCTC TATTTGAACTTAGTTGTGCATACTGGTGAATGTAATAGATGTGGAAGGAGATTATTCCTTTTAAATGGATTCAGTATCCT CTGAATCTAACTTTTCTTTTTCGTGGCCTGGGGTTGTGTTGTTTGTGTAGCACTTCATGAGATTGAGCCGGCATTCAAGA AGTTTTCTTCTTCTCAGAAATTTTCAAGTTTGATGCACTCCTTGGGTTACAAGAGGCCAGCAGTCATGCAGTCTATGTAC ATATTCAAGGTATATTTTTTCTGTCTTCTTGATGTTCGACTTCTTGCTTTAAAATATCTTAAGTTTAGAATTTTATGGTA TTATCTGATGGATACGTGTATTAATTGACCATAGTGTTCTATTTTGTTCCTATTCTTTACTGGTGGGGATTTGGGGGGAG GATAGGGGGTAATGGGATTGTGACATTTTGTTATTTAAATTTTTGTATTCTGATTGGGCAAATACACTTTGCCCCTTATT ATTGTTATCTGTTTAGTTGCAACTTTAATTTGCAATCAAGGGGTGTATGCTTTAGTGCTGCTGGATCATAATTTGCTATC AATTGGTGTATGCTTGAGTGCTGCTGGAAAATTATGATGTTATAGATAGTACATGGAAATTTTTGGTATGGGGTCGTTAA TGTGATACACAAAACTTTTGTTACTTTTATATGGTATTTATGTTGCTAGATTAGTGAAAGTTACTTTTGACTTACCTCAT ATGTTTGTTTTATTTTGCATACTTTTGAATTTGATACTAATTTATGGTCTTTTGGATACGTTATGGATATATTTTGTGTT AGTTATCTCAACAGTGCTGTAGTTTAGACTTGAAGATCCCTACCCATTTTTATGTGCAGTTAAGATATTAAAGCTGGTTG AATTTCTTTTTATCAATAGTGCTACGATGAGTATTTGTGCTTCAACCTGTTTTACCAGAGTTGATTTATCTTTTCATTTC TATGGTGATGGTGATAGTAATTGCTAGTCTTGTTTAATTTCACAAAGTATTTTATGTTTGGAAATTAAATTTTAAAAAAT AATTGCGGAAATGGTTATCCACAATTTCAAAGTGGCCACATAGAGTTTCTAACCATTAGATTACCATTCATTACCTGATT GTGAAATTTTTATCTGCAGCAACCAGGCATTGGGGGTGAAGTAGTGCCACACCAGGATAGCTCCTTTCTTTATACTGAAC CTCAAACATGTACAGGACTGTGGCTGGCTATTGAAGATGCCACCAAATTAAATGGTTGCCTTTGGGCAATTCCTGGATCT CACAAAAGTAGCTTTTTTCTCCTTTTGGTTATTTGTCACTTGGATTATTTATCATTTGCTATGGTTGATCAGATTTAATA TTTTTTCCTTTTTATTATATGGTTTCTGTAGATGGGCTTGTAAGAAGATTCTTAAGAGATGAAAATGGTGTCAAATTTGA TCGACCGTCACCATCTTATGATCAAAAAGATTTTGTTCCTATTGAAGTAAAATCAGGGTCTTTGGTTGTCATCCATGGTG ATCTTATCCACCAAAGGTCTGTGAAAACAATTTTCTCCATATAATGTATATCATGAAGTATTAAATGAAAGTTTCCTTTT TAGTTGAATTCCTGTTATTTCATCCTTACTTGCCTTCTATGTTGATGACAGCTTTGAAAACCTTTCCCCGAAATCAAGAC ACGCGTACAGCTTGCACGTTGTTGATACTGATGGCTGCAAATGGGCACCCGAAAATTGGTGAGTTAAGAAGCTTTTTCAT CTTTTAGGAGCTTAGTTATTGTTGA
CDS sequence (LotjaGi4g1v0081600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTACTTAGTTCTGATCAACTCCAATTCTTCAACTCTCAAGGTTATCTTGTGATTGAATCGTTTGCTGGTGAGGA TGAGATTGAAGGCATGATGAAGAGGATGGAGCAATTAGTGGATAACTTTGATCCTTCTTCCACCGCCTCTATTTTCTCCA CCAAGAACCAGCAAAAGTTGACTGATGATTACTTTTTCGATAGCGTGGAGAGAGTTTCGTTTTTCTTCGAGGAGAAAGCA TTTGGAAATAATGGTGACTTAAAGCAGCCGAAGCAACTATCCATTAATAAAGTTGGCCATGCACTTCATGAGATTGAGCC GGCATTCAAGAAGTTTTCTTCTTCTCAGAAATTTTCAAGTTTGATGCACTCCTTGGGTTACAAGAGGCCAGCAGTCATGC AGTCTATGTACATATTCAAGCAACCAGGCATTGGGGGTGAAGTAGTGCCACACCAGGATAGCTCCTTTCTTTATACTGAA CCTCAAACATGTACAGGACTGTGGCTGGCTATTGAAGATGCCACCAAATTAAATGGTTGCCTTTGGGCAATTCCTGGATC TCACAAAAATGGGCTTGTAAGAAGATTCTTAAGAGATGAAAATGGTGTCAAATTTGATCGACCGTCACCATCTTATGATC AAAAAGATTTTGTTCCTATTGAAGTAAAATCAGGGTCTTTGGTTGTCATCCATGGTGATCTTATCCACCAAAGCTTTGAA AACCTTTCCCCGAAATCAAGACACGCGTACAGCTTGCACGTTGTTGATACTGATGGCTGCAAATGGGCACCCGAAAATTG GTGA
Protein sequence (LotjaGi4g1v0081600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLSSDQLQFFNSQGYLVIESFAGEDEIEGMMKRMEQLVDNFDPSSTASIFSTKNQQKLTDDYFFDSVERVSFFFEEKA FGNNGDLKQPKQLSINKVGHALHEIEPAFKKFSSSQKFSSLMHSLGYKRPAVMQSMYIFKQPGIGGEVVPHQDSSFLYTE PQTCTGLWLAIEDATKLNGCLWAIPGSHKNGLVRRFLRDENGVKFDRPSPSYDQKDFVPIEVKSGSLVVIHGDLIHQSFE NLSPKSRHAYSLHVVDTDGCKWAPENW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 267 | 267 | 5.1E-105 | – | |
| SUPERFAMILY | 3 | 267 | 265 | 4.03E-63 | – | |
| PANTHER | 4 | 267 | 264 | 3.0E-126 | – | |
| PANTHER | 4 | 267 | 264 | 3.0E-126 | – | |
| Pfam | 12 | 249 | 238 | 2.4E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0081600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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