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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0082100 |
| Transcript ID | LotjaGi4g1v0082100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT4G18340.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q8L868|E1311_ARATH Glucan endo-1,3-beta-glucosidase 11; TrEMBL-Plants: tr|A0A072UYA7|A0A072UYA7_MEDTR Glycoside hydrolase family 17 protein; Found in the gene: LotjaGi4g1v0082100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10718881..10721458) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAGTGTCGTCGTTGATGGCTTTTACGTCGATGGCAAAAATTAGAAGTTGGCGTGTGTTGGAAAGAGACAGCCTTGTC CAAATGAACATAAATACAAGGGCAACTCCCTAAGGAACATAACTCTTCTCTCATTTCCCTCTCTGCCACCAAATTTCAAA CAACCAAACAATACAACATTCATAATTTCTCTCCAATCTCATTGTGTCCATTGTTCACTCACAAATCACAATGACAACAT TAGCAATCACTTACATTTTGCTAACAATCTTTCTCTCAGCAGGTACCCTGCTTGTTCTGTTTTCAGTTTTTTTTTTTTTT ATTGTTTCCTATGCATGTTTCTTATGTTATGTTGCACTATCATCTTTAATCTTTTTAACTGATTACTTTTCTGTGAAACA GATATTGGATTTATCGGCCGCGTTGCGTCGTTCGGAGTAAACTACGGCCAAGTAGCTAACAATCTGCCGGCACCGGAAAA AGTTCTCCAACTCTTCCACTCCATGAAGATCACAAAAACAAGAATCTATGACACCAACCCACAGATTCTAAATTCTCTTG CTAATTCAAACGTTGAGGTCATTGTAACAATTGAAAACCAAATACTAAGCCAGTTAAACGACCCTCAACAAGCACTTCAA TGGGTAAACGACCACATCAAACCTTTCCTACCTGCCACAAAGATCACAGGGATTCAAGTAGGGAATGAAGTTTACACGGA ATTAGACCCCACTCTCATTCAGTATCTTGTTCCAGCAGTGGTGAACATTCACAACGCGCTTGTTCAGTTTGGATTGAACT CAAACATCCATGTGTCAACACCATGTTCGTTAGAAGTTCTCGAGGAATCTTACCCTCCTTCAGCTGGTAGTTTCAAGAGT GAAATCTCAGGGATCATGTACCAGTTTTTGAAATTTTTGCAAGCAACTAACTCACCCTTTTGGGTCAATGCATATCCCTA TTTTGCTTACAAGAATGACCCTAGTAAAATTTCATTGGACTATGTAATGTTCAATCATAATCAAGGAATGGTTGACCCTA ACACCAAGCTTCACTATGATAACATGCTTTATGCTATGGTGGACGCGGTTACATTCGCGATTGCGAAACTAGGATTTAAT GGGATTGAGGTTAGGGTTTCCGAGACCGGTTGGCCGTCAAAAGGTGATTCTAATGAGGTTGGTGCGAGTTTGCTGAATGC TGAAACTTATAACAAGAATTTGTTGAGGAGGCAAATGGCGAATGAAGGGACACCTCTGAGGCCGAGGATGAGGTTGGAGG CGTATTTTTTCGCGTTATTTAATGAAGATATGAAGACTGGAGCCACCTCGGAGAGAAACTTTGGCCTCTTTCAACCTGAT GAAAGCATGGTTTACAATGTAGGGCTTTCTGATTTTGCTGCATCATCAACTTCATCTACTTCAATTTCTCTTACCTCCTC TGCCTCTGTGACAAAGGTAATTAAAAGTGAAAACCATGGTCTTTTTCTTTTCCACCTCTGCAATAGTTATATAGCTACCT AGTATGTATACCAACTTAAAAAATGGCTATGCATGTAATGTATCACGTGATGTATCTTATCAAAATGATCTTCTTATGTA AGAACTCTTGACCCTTTAATAATTTTTGACCATCTTAAAAAGTACATGACTTAAGATTTTAATTTTGAGCAATCATGATT ACATTCAAGATAATGCATTCTCACACAATATCATCATTCTGATTTAAATATTCCATAAGTAGGTAGATTTCACATTTTGA TCAATGTCAATCTAATTAATCTTACTTTGATATAGGTCGCACCAAAGGAGTACCAAAGTTTATTCTATGGGATATTTGTG TATCTGTTGAGTACAGCTTTGCGAAGACTGTTCTAAAATCCTATGGAGTGATTCATGTGTACATATTTTGCACCTTTCAA GTTGCAAAATGGAGACCCCTTAAAAGTATCTCAAGTATGATGATGATGTATATTAAAGGTAGCATATTTTGTAGAAATCA ATTAGGACCAACACACTTTCTAAGCGATGAGGCAATTACAAAATCAAATGTACGGCGAAGAGACAAGGCAATTCAATGGA AGATATGGTCTTTCATGTAGTGGCTCTAACTTTCACTCACTTTCCAGCAACAAGCATGTGGAGGTGACGTTTCATTGAGC TTATTTTAGGTAGATAAGGACCATAAGCCACCTCATCAATTATTTTTTCTGCAAGATTTTGCAGAAGAATTAGTATATTC TAGCTAGGTAGATTCTGTTTTACTTTCAAAAAAAAAAAAAAAAAAAAAAGCTAGGTAGATTCTGTTTTATTACCTAAAAA TTTGATTTTGTATATTGCTGATGATTATGTAGAATTGATTTCATTCATATCCAATTGATGAAGAAGTAAAAAAATAAGCT TCTACTTGAGAACAGAAAGTGTGTGGAAACGCCTTGTTTGTTGCCTACCTTATATATGCATCATCAGTCATCACCTTATT GGATACTGTGAAAAGCCCTGTTTTATGGGACGTGGAATCCATAACTGTTGGTATTTGTTGTATGTATAAACTTCTTTCTC TCTTTTGACCCTTTAACA
CDS sequence (LotjaGi4g1v0082100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAACATTAGCAATCACTTACATTTTGCTAACAATCTTTCTCTCAGCAGATATTGGATTTATCGGCCGCGTTGCGTC GTTCGGAGTAAACTACGGCCAAGTAGCTAACAATCTGCCGGCACCGGAAAAAGTTCTCCAACTCTTCCACTCCATGAAGA TCACAAAAACAAGAATCTATGACACCAACCCACAGATTCTAAATTCTCTTGCTAATTCAAACGTTGAGGTCATTGTAACA ATTGAAAACCAAATACTAAGCCAGTTAAACGACCCTCAACAAGCACTTCAATGGGTAAACGACCACATCAAACCTTTCCT ACCTGCCACAAAGATCACAGGGATTCAAGTAGGGAATGAAGTTTACACGGAATTAGACCCCACTCTCATTCAGTATCTTG TTCCAGCAGTGGTGAACATTCACAACGCGCTTGTTCAGTTTGGATTGAACTCAAACATCCATGTGTCAACACCATGTTCG TTAGAAGTTCTCGAGGAATCTTACCCTCCTTCAGCTGGTAGTTTCAAGAGTGAAATCTCAGGGATCATGTACCAGTTTTT GAAATTTTTGCAAGCAACTAACTCACCCTTTTGGGTCAATGCATATCCCTATTTTGCTTACAAGAATGACCCTAGTAAAA TTTCATTGGACTATGTAATGTTCAATCATAATCAAGGAATGGTTGACCCTAACACCAAGCTTCACTATGATAACATGCTT TATGCTATGGTGGACGCGGTTACATTCGCGATTGCGAAACTAGGATTTAATGGGATTGAGGTTAGGGTTTCCGAGACCGG TTGGCCGTCAAAAGGTGATTCTAATGAGGTTGGTGCGAGTTTGCTGAATGCTGAAACTTATAACAAGAATTTGTTGAGGA GGCAAATGGCGAATGAAGGGACACCTCTGAGGCCGAGGATGAGGTTGGAGGCGTATTTTTTCGCGTTATTTAATGAAGAT ATGAAGACTGGAGCCACCTCGGAGAGAAACTTTGGCCTCTTTCAACCTGATGAAAGCATGGTTTACAATGTAGGGCTTTC TGATTTTGCTGCATCATCAACTTCATCTACTTCAATTTCTCTTACCTCCTCTGCCTCTGTGACAAAGGTAATTAAAAGTG AAAACCATGGTCTTTTTCTTTTCCACCTCTGCAATAGTTATATAGCTACCTAG
Protein sequence (LotjaGi4g1v0082100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLAITYILLTIFLSADIGFIGRVASFGVNYGQVANNLPAPEKVLQLFHSMKITKTRIYDTNPQILNSLANSNVEVIVT IENQILSQLNDPQQALQWVNDHIKPFLPATKITGIQVGNEVYTELDPTLIQYLVPAVVNIHNALVQFGLNSNIHVSTPCS LEVLEESYPPSAGSFKSEISGIMYQFLKFLQATNSPFWVNAYPYFAYKNDPSKISLDYVMFNHNQGMVDPNTKLHYDNML YAMVDAVTFAIAKLGFNGIEVRVSETGWPSKGDSNEVGASLLNAETYNKNLLRRQMANEGTPLRPRMRLEAYFFALFNED MKTGATSERNFGLFQPDESMVYNVGLSDFAASSTSSTSISLTSSASVTKVIKSENHGLFLFHLCNSYIAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 10 | 375 | 366 | 2.5E-201 | – | |
| PANTHER | 10 | 375 | 366 | 2.5E-201 | – | |
| Phobius | 16 | 27 | 12 | - | – | |
| Gene3D | 26 | 352 | 327 | 1.3E-121 | – | |
| Phobius | 28 | 390 | 363 | - | – | |
| SUPERFAMILY | 28 | 344 | 317 | 5.27E-86 | ||
| Pfam | 29 | 344 | 316 | 5.6E-92 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0082100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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