Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0083000 |
| Transcript ID | LotjaGi4g1v0083000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sulfiredoxin; TAIR: AT1G31170.1 sulfiredoxin; Swiss-Prot: sp|Q8GY89|SRX_ARATH Sulfiredoxin, chloroplastic/mitochondrial; TrEMBL-Plants: tr|I3T533|I3T533_LOTJA Sulfiredoxin; Found in the gene: LotjaGi4g1v0083000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:10871548..10874937) extracted from Lotus japonicus Gifu genome v1.2.
GCTTGCTCTAAAGTATCTTTTCAAGGTACTACCTGACTTTTCTGGAAATAGCTAACATGTATAATCATATTTTTGTAAAT AGCATTACATTTTTCCATCTCACCAACAAAGCAATTATGAATTTTATGACCTTGTCCAAACAGAAAATTGAAAAAATAAA AATAAAAAAACACCTGCGACATTGAACAAATTTTGAAACACCGAGAATGTTCGCTTTGATAACGAAAGCTCTTTGTGACA TCAATGGCGAGTAGCTCCTGTATTTGAATCATTTCACATTCAAATACAAATACAAATACACACACACACATAAAGGAGTG GAATGAAGTGTGAAAAGTTCACCTAAGAAAATTGAAAGGAACCGTCGCTGCCATGTTTGCAACTCCCCTCCAAGCAAGGA GTGAAGCGAGCTTGAAAATTGAGTGTGGACTGGAATAGTAGTATCTTATACAAGAACAATCTCAGCCGTTCAAAATTTTG TGGGGGCCACGCTTCTATGTATATATATATACATAGAAAAAACACATGTGCATAGAAGAAGAAAGAAAACAAAAAAAAAA AATGGCAAATTTTGTTTTGCAGGTTCCAATTACGTTGAGGAGTTTCACAGTGTCTGCATCATCCAACTCCAACGGTGCTC AAATGCTCAATCTTTTTCTTTCTGTAAATTAAAATTTGTATTTTTTTTAATTTTAATTTTAATTGTATTTTTTATTTAGG GGCTCCTCCTGGTGGCTCTGGAAGTGGTTGTGGTGGTGGTGGGGGTCCAGTACTTCTGGAGCTTCCTCTGGATAAGATTA GAAGGCCTTTGATGAGGACAAGAGCAAATGATCAGAAAAAAGTTGAGGAATTAATGGATAGTATTGCTGAAATTGGTCTG CAAGTGCCTGTAAGCACTTTCCCTTTTGCCAAATTTGTTTTTCAAAATCTTTGTGTGGCTTTTGAGTTTATATATTTCTG CTATGCTGGGTTAGACCTTTTATTTAGTTAATCCCATTGGATGTAGTTTGAATTGGACTTTAAGCTGAGATACCCTTTGT AGTTTGAATATGAAGTATTTTTAATGGATTTGTTGGAACTGTTTTTCACTGGAAATTGGAATAGCAATATTTGTGTTGCA TGCCACACAATTCATGGCTATTATTTGGGTCAATTATGATAGTTATACTACTTTTGTGAAAGTCACGAGAACGGTTATTG AATTTGTGTCAAGCATGTCTCTTTTCAGAATAAGAAGAATTGTGAAAGTAGACTATTGTGTTTGAATTGTGAAGTCTTAA TACGACTTTGCAACAAGAACAAAAAAAACAAAGCTTGACTAATCTTCTAGGGAAACTATTCTGAACAAAATGGGGAATAG ATTGTGCATGCTTGCAATCAAAATTGATCACCTTTTATGGATGGGAGACCTCTGCTAATTTTAACACCATTATAACTCTG GTGACTTTGTTTGATCTGTGCAATAACTCTGATGTGTGCATACACCTTCCCACTGTTCAGTAACACTGAATCCATGCCTG AGGGATATGTTTTTTGGGTCCTGCTCCGATAAAGTAAGTATCTCATTTTATAGGGTAAAGTAAGTCACGTTTACCATTGA TTGAGTAGATCCATTGACTTTTCAAAGTAGGTAATCATTACTAATGTTCACGATGACTTACTTTACCCTCCAAAGTGACT CTCTCACTTTAGAGGAGCCAAACCCATGTTTTTATTTTTGCTCCATCGGAAGATTCAAACCCATGTTTTGTTGGGTTGCT AAATTTAAGGCCCTGAAATTGATGGTATAAAAGGACATATTTTGAAATTTATATAGCCAATAAAATGCCATACTATTTTT ACTTATTTCTTGTTTTCAAAGATTTGAAGGTATTTTGAAAACAGTGCTCTGTTATTGTCACCACTTTCTGCACAAACATT TAGAAACAGAAAACACTAGATAATTTTGTAATTATGATAAAAAACATGAAATGAAATCAGAAAATGTTTTTATGAAATAA AAAACACCCTTAGTTTGGTATGATTTACTTGCATTGTATGTTTTTAAGACCTAGAATTCATCCATTTTCTAATTATATAA ATTTCTGATTCATCAAAATATCTTGCTCAGCTGCTAATTTAAGTTGCTTTGAAGTGATACAGATTGACGTCCTTGAGGTC GATGGGGTCTACTATGGTATGTGCATTTCTAGATTGTGTATGACTTTATGGCATCTTATTATATAAAATTGATGTATCTG TATAGCTTTGTCATGCACATTAGCTTAAGACAAATGGAAAGAAAGTTGAAGGACTTGAAACAAAAAACCTAAAATATGTT TGAGGATCAACATGTTTCCTATCAATGGTTTCTCACAGTTAGGCAAAAAATCTATTCTCTTTGGTGTGTAGGTTTCTCTG GCTGTCACCGCTACGAGGCTCACCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATTCGCCGTGGTACAAAAGAGACT CTAAGGTTAGTTAGAGCCGTTTTGATATGGACTAAAGAACACTTATTGGAGCTTCTTTGCTAAAAAATGCTATAGATAAG CTCCAATAAGTACTCTTTGACTTGCATCCAAATAGGCTCTTGTTTTCTTTACTCTTACAAAAGCATATGTGACTTGGATT CTTTGTCTCGGCTGATAGATTTTCTTTCTCATCATGTAGGCATCATTTGCGCTGAAAAATATCTATACTTTTATCTCTCA AACTAGTGGTTCAGTTCCAAGTAATGACAGAAGTCTCTTGCTTCACATATACAGTGATTCCTGTCGATAATGTACTGTGC TATAGTTGTATACATACATACATGAAGATGAAAATGTTTCCTTTTAATGACCTAGAGGACAATGCTCCTAATCTAATTTT ATTGTCCAAGTAATATGTTGTATATGTTACAACCTCCTCCTACCGACAGCTTTTTGAAAGCCGACGAGATCATTATCCAC GGCTTTTTGACCGTCGGTAATTAATCATTACTGATGATTCTGATTACCAACAGCCTCAGTTTTTTTCTTGTAGTGTCTGT AGCAACAAAAACAAACCAGGCAGCAACTACAGTCGTAAAACAAAAATAAAAACAAATGCAAAGCGTAGGGAGAAGTAAGA GTGAATGAAGGTGGTGGTGTGGATGCGGGTAAAAATCCAAAAGTCTTGGTTATTATTTCTGATTGGTGTGTTTAAATTTG GATGATGAGGGGATGTAGTTGTGAGCTTCGCATGTTGAACAACAAAGAGAGGAGAAAGATATGAAAGTTGAAAGGTGGTT TTTAAGGTTTAAAACAGTGACACAGTAAATTTATGTGGGGGCAACACATACATAAGTTTTTTTTTTTTTTTGTCTTTGTC ACTAGTCTCCACGGAAAAAGGGGCTCTACG
CDS sequence (LotjaGi4g1v0083000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCATAGAAGAAGAAAGAAAACAAAAAAAAAAAATGGCAAATTTTGTTTTGCAGGTTCCAATTACGTTGAGGAGTTT CACAGTGTCTGCATCATCCAACTCCAACGGGGCTCCTCCTGGTGGCTCTGGAAGTGGTTGTGGTGGTGGTGGGGGTCCAG TACTTCTGGAGCTTCCTCTGGATAAGATTAGAAGGCCTTTGATGAGGACAAGAGCAAATGATCAGAAAAAAGTTGAGGAA TTAATGGATAGTATTGCTGAAATTGGTCTGCAAGTGCCTATTGACGTCCTTGAGGTCGATGGGGTCTACTATGGTTTCTC TGGCTGTCACCGCTACGAGGCTCACCAGCGCCTTGGACTCCCCACCATCCGTTGCAAAATTCGCCGTGGTACAAAAGAGA CTCTAAGGCATCATTTGCGCTGA
Protein sequence (LotjaGi4g1v0083000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCIEEERKQKKKMANFVLQVPITLRSFTVSASSNSNGAPPGGSGSGCGGGGGPVLLELPLDKIRRPLMRTRANDQKKVEE LMDSIAEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRHHLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 140 | 128 | 2.5E-56 | – | |
| PANTHER | 13 | 140 | 128 | 2.5E-56 | ||
| PIRSF | 13 | 140 | 128 | 9.7E-27 | ||
| MobiDBLite | 31 | 53 | 23 | - | – | |
| SUPERFAMILY | 53 | 139 | 87 | 1.06E-28 | ||
| Gene3D | 54 | 140 | 87 | 1.5E-24 | – | |
| CDD | 56 | 139 | 84 | 1.97675E-43 | – | |
| SMART | 56 | 135 | 80 | 2.5E-17 | ||
| Pfam | 57 | 133 | 77 | 4.8E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Sulfiredoxin activity | Catalysis of the reaction: peroxiredoxin-(S-hydroxy-S-oxocysteine) + ATP + 2 R-SH = peroxiredoxin-(S-hydroxycysteine) + ADP + phosphate + R-S-S-R. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0083000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…