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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0084500 |
| Transcript ID | LotjaGi4g1v0084500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c6; TAIR: AT5G45040.1 Cytochrome c; Swiss-Prot: sp|Q93VA3|CYC6_ARATH Cytochrome c6, chloroplastic; TrEMBL-Plants: tr|I3SY34|I3SY34_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0084500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11132852..11136781) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTATTTTCTTAAAAATTATTTTTATCTATTAAGGATCTATTTGTTTTTTTATCTTTTAAGGACAAAATGAACCGAC CCCTCTAAGGAGCAAATTCACTACTGACTCCAAAATTTATAGTAGCCAAGTAAGCTATATCCAGTTTCACTTTACTTTTG CATACACAACCGTATTATCATTAAACACTGAAGAAACCAAATGAAGCTTGCTGGCATGATTTCTTGTTCCACCTATTACA ATCGCCTTCTATCCGTTAAGGTAAAATTAAACTCTTTCTTCTCACACTTTTCAGTTTCAGAATCATGTTGCTACCTAAAA CTCCCAGTATTGACACCCTTATATTGAATTGAACTATTGAAGGATAGTGTGAAAAGGGAAGAAGAGAACCCCATTCCAAG AAGAAAGGCAAAAGAACTCAAGTTTTCTTTGAAGAGCTTGGCTCCTCCTCTTGTGGCTGCGTTTCTGGTCTTATCTCCAA TTTCTGGCACTCCAGGTAAAGAAAAGACTAAATTGCCCTTGCTTCTAATTCAAACTGCATTTTTGGCACTGCCCACATGC CTCTAAGCTCTTGTTTCATGACATTTAGGCCCGTTTGGGAAAATAACTTACTTAAGCGCTTACGACATAAGTGTTTATTC ATAAGCTATTTTTTAAAATTTTTTAAAATAAATTAAAAATAACCTATATAGAAGTATAAGCTCTAAATAAGCTCAAAACA GCTTATGGTAGGTCATAAGCTGCTTGCATAAGCTCTCCCAAACACTTGCATAAGTGCTTATGTTATCTGATAAGCTCAAA TAAACTCTTCCAAACAGGGCTTTAGCACAGTTGCTGGAAGTATGTTTTGATTGTTTTCAATTTTGAACCTATATTATTGA AACTTGATCTTTTGAGTGCATTAGTACAACAATTTGGAGCTTCAAATCAACTAAGAGGTGTGTGTTTGGAAACCCATTAG GTCTTTCCGTGTTAAAATCAGCACTATCGGAATTGATTGTGAATGGAGTTAATTTTTAGAAAATTCATTATAGAGAAAAT GAGTTAATTGTAGTGACGTGATTTATGTTTACATTCATTTATGAGAAAAATGATTTTTGTAGGCTAATGTTGTGAAATCT AGTTATGAATACCAACAATTGTTTATGTCTACTGCGGGGGGGCTAGGATTTGTAATTTCGTCCCAAAATTATTTTGGAGT TAGAGTCAATTGTGAAAAATTAGAAACATTCAAACACCCAAAAATTGATTATGATGTGAAGAATCAATTCTGAAACATCT AAATGTGGAACAAATCATGCTCTAAGAGTAATTTTTTGTGAGATAGAATTGATTCTAGAAATTTCATCTGTGGATCCAAA TATGCGGCCAAATCTTGAATAGTGTTTCTGAAAAGATACATCTAAAAAACAATGCAGGTTTCTATGATCGGAAGGAAAGA ACCATCTTACATTTGTAATCTAACCACATGGGACCTTGGTAGATTATTTGATAAAAACCGAGTTGAAGAGGGGAGATGCA TGGTTTATGAATATGTACTCGTGGGTTGAAAATAATGGACAAGATATCTATATTCAGAATTCTGATTAAAAATTGTTACT TTTAGCGATAACACATGTCTTAGAGACATATATAGGCTGGAAGTTTATGGCATATAAGGCTTGTTGAAGTCTATATCTGT CTTCCAATTGGCTAGAAGCTGTTTTCAATGTCATTTGAAATTTTGAACAACTTCATTGTTTTCTCTGCTTCATCTTGTTG CACGTATCTCAAATATAAGAAAAGAATGTTTGCTATAAAAGAACTAGAACTTCTGAACTTTTCAGCTATTCTAAAAATAA CTTTACATGAAAGAAACGAATAGTCGATATTTTTAGCTTCATATCTTTTGCAGTTTCAAGTGGCCAAACCATAGACATCC AGAGAGGAGCCACATTGTTTCGTAAAGCTTGTATCGGATGTCACGATGCTGGTGGAAACATAATACAACCAGTGAGCATC TCCTTATGCATGTTGTTTCATTATGTCCTTGCAACACAAGTTCTTCTCTTTGTTCCTTATTCTTTCCCTCCTTGTTTTCA TTCAGGGATCAACTCTATACACAAAGGATTTACAGAGGTAACTGATGAAAACCAAAGTAGTAAGTACCATAAGGTGTGAA TATAAAATATGATGGATGTAGAAAGAATTAAAATGTTTGAAAGATCACTTCAAATCTAAGCTTTAAAATAAAAATTTCAG AGATTGCTTTCTTACAGAGTTTATGTAGATACACGACAAATATTTTATATGCAAATTACTCTGGCCTTGGAGGCCCCTAT TTCAAGTTAACCGTAGGAAAGCCAAGACTAACTTACCCATCCTAACTGTGAAATACCAGACGGTCGAGAATTAAATAAAT AGTATAACTTCAATAAGTTAAATTCTATTCAATCAATGGTTCTTGTAAATTTCTTGCTTAGCTAGTTCTTTGGAAGGTCT TAAATGTGAATTTTCAATTCGTTGCTATCTTGCAATGGTGTGTGTAGAAAACTTATAATTATTTTTTCACTATATCTTTG AAATAAGCCCTATGTTTCTCAAACAGAAATGGAGTTGATACAGAAGAAGCGATTTACCGTATCTCATACTATGGCAAAGA AAGAATGCCGGTAAGTTATCTTGTTGAGGCTTAAGGATGAACTATTTACATACTAAAATGGATAAACTTCCAAGGGAAAC AGACAATCCATCAGAATATTATATTTGCTCAACTTCATGCCTTAATGTCTGTCCTTCATAACTCATAGTTTAAGTTTTGT GGTTTGAATTTCAGACCAAAATTGAGATTCTACTTGGTTAACAAAGTCTTATATACTTCCATTCAGGGCTTTGGTAAAGA GTGCATGCCTCGGGGCCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATTAAGTTATTGGCCGAGTTTGTCAAGT TACAGGCCAATAAAGGGTGGCCAAGTATAGAATTGCAAGAAAAATGATAGTTATACATAATGAATTGGTACTTGATGATT GATTTTGTTCACTGCATTTATTCAATTTCTTGGCAGTTGTAGTTAAAGTTGAAATCTTCTTTTCTTGAACCTAATTGTGT GGGGTTTGGATAACTGGACCGTAAGTTGAGAACTGTTTGAGTAAGGGAATATTGAGCCCCGGTATGGGATGTTGGCAAGG TGGAAGGATGGGTAATATTAATATGGGGCACTCCTCCGCCGAAAGGCCTCCTTCTCGTATCCAATGATCAAAGGGGCACC AGAGATGCGTACCTTAAAGATGTTCCGACGCTTAAGTCATCAAGACTAGTGAGAAATAAGGATTAGGGTTGAACAGATAA GGTGGATCTGAAGTGTATCTCATTTATATAGGTAGGGTCGTAACTAACATGTGGAAAATCCAGTTGAGAGGTGATATTGT TATTTAACAGATATTGTGCAGTAATTGAAGGTGTTACCTTAGTTAGGATCCTTATTGTCATGATGTGTAGGACCTCTTCA ATATTGAACTAAAGTATTAGGCATATCATTTCATTCTGTAACAGTTCCCCCCAATTCGTGTATCCTAGGCATTAGGATAA TTGTAAGGTCAACATTCGAGATAGGTCTTTGGTCCAAAGAAATGACATGTTGTGCCTACCTTTCATGATATACTCATGAT TCGATATAAGCTTAACATCTTCTTCGACATATGTTTAGGGTGATTAACCGAGTCAATTTTGTCATGCGTTTTACCTTAAA TATTGGCATTTCGTTTGACGTCGCTCTCTAGACTAGGAAAAGACATGTCTTGTCATGAATTGACTGTTGATAGGAGAAAG ATGTTTTTGTGACTCTTTGTCTGATGAGGATTGATTCAACGCGACTTTCTAATGGTAGCGTAATGATGAGTTGCGAGGTA CAAAATGTTA
CDS sequence (LotjaGi4g1v0084500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTTGCTGGCATGATTTCTTGTTCCACCTATTACAATCGCCTTCTATCCGTTAAGGATAGTGTGAAAAGGGAAGA AGAGAACCCCATTCCAAGAAGAAAGGCAAAAGAACTCAAGTTTTCTTTGAAGAGCTTGGCTCCTCCTCTTGTGGCTGCGT TTCTGGTCTTATCTCCAATTTCTGGCACTCCAGTTTCAAGTGGCCAAACCATAGACATCCAGAGAGGAGCCACATTGTTT CGTAAAGCTTGTATCGGATGTCACGATGCTGGTGGAAACATAATACAACCAGGATCAACTCTATACACAAAGGATTTACA GAGAAATGGAGTTGATACAGAAGAAGCGATTTACCGTATCTCATACTATGGCAAAGAAAGAATGCCGGGCTTTGGTAAAG AGTGCATGCCTCGGGGCCAGTGCACATTTGGAGCTCGTTTGGAAGATGAAGATATTAAGTTATTGGCCGAGTTTGTCAAG TTACAGGCCAATAAAGGGTGGCCAAGTATAGAATTGCAAGAAAAATGA
Protein sequence (LotjaGi4g1v0084500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLAGMISCSTYYNRLLSVKDSVKREEENPIPRRKAKELKFSLKSLAPPLVAAFLVLSPISGTPVSSGQTIDIQRGATLF RKACIGCHDAGGNIIQPGSTLYTKDLQRNGVDTEEAIYRISYYGKERMPGFGKECMPRGQCTFGARLEDEDIKLLAEFVK LQANKGWPSIELQEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 172 | 159 | 1.1E-70 | – | |
| PANTHER | 14 | 172 | 159 | 1.1E-70 | – | |
| SUPERFAMILY | 67 | 169 | 103 | 1.41E-15 | ||
| Gene3D | 69 | 173 | 105 | 1.1E-40 | ||
| ProSiteProfiles | 71 | 163 | 93 | 11.219 | ||
| Pfam | 72 | 137 | 66 | 8.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi4g1v0084500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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