Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0086100 |
| Transcript ID | LotjaGi4g1v0086100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT5G45190.1 Cyclin family protein; Swiss-Prot: sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5; TrEMBL-Plants: tr|V7C928|V7C928_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0086100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11357196..11363467) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAAAATAGATAAGAAACATATAGACTTACTTAGTAGGTACTTTTGAAATCATGCAATGAATCTAGTAAAGTGTATTG CTGATTACTGGTTAGAGAGGCTCCTACGTGAAATTTTAAACATGACAAGACACACTTAAAATGAAAACAAAAAATCCAAA TCCAAACCCAAACAACGAAACACGCTCACACACACGAAGGGGAAAACAAAACACAAAGGAGATTATCGAAGCTTCTCGGG TTGCACCATCCCGCGAGCGAGAGAGAGAGAGAGAGAAGAAGAATCGAAGGCGACGACGACGACGAACGTTGCATCCTGAG AACATGAGGGTTCTCTATCGCTTCCCTTCCGTATCCGTAAGTCGCTGCGATTTTGCTTTGTTTCTCTTTGAATCTCTCAT TTTGATGTGTTTCATCGATCTATTAGTTTCGATTAACTCGCTTTTTCTTCGTTTTAACCTTCGAATTTCATGATTTTCGA ACGATTTATCGAAGCCCTTTAGGTATGGGTTTCAATTTTGGGACCGGATTTCACCGTTTTCCCAATTTCTCGATTTTGTT TCTGCACATTCTCCCACATTTTGGGACCAAATTGAACCGGAAAAGTTTGTTTTTTTTAATCCTATTTGGGTGTGAATTTG GTACTGTTGATGTTTGTTGGGTTTTTGTGGTTGTGCAAATCGATTTTGATTTGTGAAGCGGATTAGGGTTCACTCTGAAA CTGTCTGGAATGTGGGAATTTAATCGAATGTGGCATTCTCGAGAGTTCGAGAGAGAGAGTATGTGTAGTGAGAAATAGGT TGGGGAGAGTTCTCTTTCTCTTCCATGATGCTAGGTTTGTATTTTTTGGATGTTATTTCTTTTACTCTAGGTATGCCTTA ACTTGCATGTTTTGCTTCCTCTCTTTGTAGATTTATATTATCGATGCGGTTTGTTATTTCATGTACTGTACTACTGCCAT GAGAAACCTTGAAATGTGACATTCTATCATATGATTGTACAAGACTGATAGAAGATAATATATATAAGTGACGTTACCGA AAGTTGCTCTAGCGTTTTTACTCAAAAGAAGCGTTGTTTTGTCTCTTACCGTATTTTCATAATCAGTTCATTTAAATTGT ACTTCCATTTTTCAACCCATTCTTCAAATTGAGAAAGCTTTGGTTCGAGATTCTAATAAAAGCTGCTGGACTCTGCTCCA TTTTTGTGAGTGACAAGCCTCGGTTCTGAATGTTAATGCACAAGCTAAGATGTAATTTGGAACACCATTTGTGTTGAAGT ATTTATTTTTGAATTACTTTTGTTCTTTGTTTCTTTGTGTCTGCTGATTATTTGTAATAACTTACTATTGATGAAGCTGC ATAGACTAGATTAGCTCGTAAGATTGAAATGTTACTGTATCAAAGGGCTCATATTCTGGATTTATAGCCACAGACTTAAT TATAAAGGACAAGGTTAAAATTGAAACCACTTAAGAGTTTCTGATAGTTTTGCATTTTCTGCTTTTGATGACACCAAAAA GCATTTGTAATGAATTACAATTTCTTCATTTCTGTTATATTATTCAAAATTCCAAATACATGATACTGATATTTTTATAC ATCTTCCAGAATATTTCTGCTACATGATGTTGAAGAAGTGATACAGAACGTATAACAAGTGATACAGAACTTATTCAGTG CACAGAGAACTGGTCATATGGCAGCACTTGTGGCTGGAGAGTTGTCACATCATGGAGTATCCGATGACAAGCAAGAGGAA GCATTGGGTCGCTGGTATATGTCTAGAAAAGAAATTGAGGAACATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAA AGAGACATATCTGCGCAAGTCATACTGCACATTCTTACAGGATTTGGGCATGAGACTTAAAGTGTGAGTTTTCTGCAAAT GATATTAATATACATTATGTTATGCTGTTTTGGAGTCGCTTCTTATTATGTGTTTGAGTTTGCTTTGAGGGATTATGTTT CATCCTACCGTTTTTTACATTCTCCCTGTCACTCTTTCAAACCCTTATTTCCTCTCTAATTTCTCAACAAGAATATTTTA TGTGAAACATTTCCTAAATAACACAAGGTATCTGAATGACTGAATGACACACCCACCAATGCAATCTTAAAGCTCTATGA GCATATGCATATTTGTTTTGCAATTTGGTTGCCTTTATCCTTTTTAAGTTCTGAGGTATCTTGTATATTTGTAGTCTTTG TAAGATAGACAACAATTTCCTTTTAAATGCACTTGGGTTTTTTCAATAAGCCTTAAATATGTACATCCTGGCATTGAAAT TTCGTTGTAGGTTTTCATATTGTGACTTGTCCCCTGCAGGCCTCAGGTAACTATAGCAACAGCCATAATATTTTGTCATC GGTTCTTTCTTCGACAATCTCATGCAAAGAACGACCGAAGGGTGGGTTGTTGCGCTTTTTCATTAGATATTATGTAGGCA TTTTACCTCCAGATCTTTAGTAAGTTACATTTACTTGTGTTATGTTTGTGTGATTTCCTTCGTGGATAGCTGGTATATTG TAAGTGTAACAGAAAATTTATCATAATACTATCTAGATGTAAGTTTGTTTTATGCAGAATTTGTTTCTTAATCTAATTTT CGATGCTTGTCGTGCCTGGTTTGCATATACTTGGTGGGTTGTTTTTGTATTTTTTTCCAGTTGTTTAGCTCCGTGTTTTT ACCATGATTAAGCTAGCAAGCTTTTAGAGTTGAGTTAGGCGCAATCCAAATTTTAGGACAACATTTGGAGGTTGGTGGTT TGAGCATATTTTTTTATCCTACATTTGTATTCAAATTCGAACTTCTACTTGAAGTTTCTGTTCATTGAACTGTCTAAAAT CAAAATCTTCAACAATTGTGCTTTATTATCTTGGTCCCCTAATTATTTGATGCCAGGAGATCATACTTATGTTCCAACTT TATGTCAAGATAATGTGATAGGTGTAAAAACAGTATTAACTTGAAGATTACTGAAAAGAAAAATCTTATAATTCTATTGA TGAACATCTTTTGCAGACCATTGCTACAGTCTGTATGTTCCTCGCTGGGAAGGTTGAAGAGACTCCTCGTCCATTAAAGG ATGTCATTCTTATTTCTTATGAGATCATTCACAAGAAGGATCCTACAGCTGCGCAGAGGATAAAACAGAAGGTGTTCTAT TAGTGATGGTGCCTTGACCAGTTCATTCTTATACATCAGCATTCTGACTTCTGGATTTATCTGAAATCTTATTGTTGCTG GTTAAATCTCCAGCAATTCTTTCTTGTTCTGTCTTTCTCCGATTCTTGTCTGAAAGTAGTTTTCAAGACTGGGCCTAACT TCTAGTTGCCAGTTTGTAGCCAACAGATAATCTATCTAGGTTAAATGTATGCTCAAATATGGTAGATGGGGTATTGAAAT CCTATAAAATGTTTATCTGGCTTGTAAGTTATGAAAATTCTTCAAAAGTTTTTTTTTCTTTTTAGTTACTGAAATAAAAC TGTCTGCATGGAATTTTATCATTTAGCAAACTTCTGAAAATTCTTCAAAAGTTTCCCTTCTCTTTATATTTTGGTTCTCC TTTTCCATAACCCTTGATATATTTATATTTGTCCAATAGAATTAATAAATGATGCAGGAAGTGTATGAGCAGCAGAAGGA ATTGATTTTACTTGGAGAGAGGGTTGTACTTGCCACTTTAGGGTTTGACCTGAATGTTCAACATCCATATAAACCCCTTG TAGAGGCTATAAAGAAGTTCAGTGTTGCAAAGAATGCCCTTGCACAAGTTGCATGGAACTTTGTTAATGATGGGTAGGAT TAAGTTTCCGTTTGTTCTATTTAACATATTTGAATTGATTTTAGTAATATTTTGTTCACACACTGGAAACTGACTTTCAG ACTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCTAAGTTCCTTA GAGTGAAGCTTCCATTAGATGGTGAGAAGGTTTGGTGGCAAGAGTTCGATGTCACCCCACGCCAATTGGAAGGTTGGTAT CATCCCCTCATTTCATTTGCATGCTTTCCTATTGGATAAACCTCTTTGAACCTTGCCATAATGCATTATTATAATTTCTG CCATAGTGCCGCCATTCTCGTGGATGGTTTTTGCCCTTTTCCTTGTCAAGTTCAGCAATATCATTCGATAACAAACCCAT TTTTGTGCCATTAGTAGTTTTCTTTTAAATGGTTGGCTGCCCTTTTGTCTCTATACGTGTATCCCCGAGTCCTTATGGTT GTTTTCTCTTGCAGAAGTTAGCAATCAAATGTTGGAACTCTACGAGCAGAATAGAATTCCACAATCACAAGGAAGTGAAA TGGAGGGAAGTGCTGGTGGGGGAACAAGAGCTGCTATAAAGGCTCCTGCAGCAAATGAGGAACAGGCCTCAAAACAGGTT TCATCTCATCCAACCCCCCCGCACTCTGTTGACAATGATGCGGTACCATCAAGAGGAACTGAAAACCAGAGCAATGATGG GAGTACAGAAATGGGCAGTGACATTACTGATCACAAGATGGACTCGGAGATCAGGGAGTCTCAGAACTCAGAACAGTTAC CTCAGAAAGATAAGAGAGAAGCGGAAAATGGTTCTAGATCTGGGGCTGAACGAATAGTTCCGGGAAGCCAGGATAAAATG GTTGGGACAAAGGAGGCTGTAGAAGTAGGAGGGAGGGACGATAGCTGCGATGTTGGTCGAAATCTAGAGCTTCGGGAAGG TCCACTTAATCACTCACCAAAAGAAGCTATCAAGATGATTGATAAAGACAAGGTGAAGGCTGCCTTAGAAAAAAGGAGAA GGGAACGGGCTGAAATGACAATTAAGAGAGATGTAATAGATGAGGATGATCTCATTGAGCAGGAGCTAGAAGATGGAGTT GAATTAGCAGTTGAGAACGAGAAAAATAAGCGAGAGAGAAAACAGAACTGGTCCAAGCCTGATGATGAAGATCATGGTAA AGACCATGAGGGAACTACAGATGATAGACACGTGAGCGTGAAAGGGCAATTAAAGAAAGACATGGATGGAGAAAATGCAG AAGAAGGGGAGATGATAGATGACGCTTCATCCTTTTTGAACCGCAAGAGAAAGATAGAGAGCCCTCCTTCTAGGGAACCA GAGATGAAAAAGCGGCTTGGTTCTAGTTATCAGAATGATCATGCTGAAGAAGGAAACGGGGAGGCCAGAGTTGGTTATGC AGATGGCGACGCATAAGAAATGAAGAGGAAATCCTTAGGTGAATATTCTACCGTCCTTCATTTTCTTACCTTTATGAGGA AAATCATTGTTGAGATGAATATTCTGCCGTCCTTCATTTTCTTATTGTTATTTGGCTGCTAATGACTCATTATTCTGGAT GCTCTTGTTTGCTATACATTCCTTATTATGGAACGGGATGCCTCAATTTTGGTACTGCCATTAAAAATGTTATCCTTTTC TTTATTTTTGGATAACTATAAAAAAGTTTAACATTATGAATATGTCCAACCTGAATTTTGTTGCTCAAAGATTCTGCAAG GCCATATCTGAGATCTGAAATTGTGAAGATGTGAATTTTTAATCACTGATTCTAGTCGTCTCGTGCAAAGGCCAAGCTAT CCATTTAATGTTCTAAGCCTGAGGCCTTGTTTGACATGCCAAATAATGCATGATCAATTGTTTGGTGCGGACATGTTTAC AGTTGGATTGAAATGGATCACGCGTTGGACGGGTAACTAAAAATGGGTAAAAATGGTTAGTTACTGTCATGTTCAGTTTC ATAAACCCTTTGTGCTTTGCCATTGCCCTGGAAGCAATTATGTTGCCTTTCTGGTTCGTTGTCAGTTTTGATCTTATGCC TCGACCCTTATCCTCATCACACTCTCTTGCTATCTTTTGCTTAGTCCCCCCTCTGAATCAAAACTTACTTGGCAATCTTT TTTCCTATGGCGGACCTCCTAGGCTAGAAAAAACATAAAGAGAAATTAGGCACCTTCCATCAATGGGACAGGGATATGCA AACCAGCTTGAAGGTGCTCTGAGTTGACAAGAAGGCGGTGGATACCGATGAACCTATGGCAAGGTTTAGTGGGACTAAAC GCGTCATACACTGGTGTTGGTGGTGTCATTGATGGAGGTGATAAGGTGGCTTGACGTGATGAATTATTTAATTAAAACAC GTTCATTAAGTCCTCTAAAGTTACTCTTAAAA
CDS sequence (LotjaGi4g1v0086100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCACTTGTGGCTGGAGAGTTGTCACATCATGGAGTATCCGATGACAAGCAAGAGGAAGCATTGGGTCGCTGGTA TATGTCTAGAAAAGAAATTGAGGAACATTCCCCATCAAGAAAAGATGGAATTGACTTGAAGAAAGAGACATATCTGCGCA AGTCATACTGCACATTCTTACAGGATTTGGGCATGAGACTTAAAGTGCCTCAGGTAACTATAGCAACAGCCATAATATTT TGTCATCGGTTCTTTCTTCGACAATCTCATGCAAAGAACGACCGAAGGACCATTGCTACAGTCTGTATGTTCCTCGCTGG GAAGGTTGAAGAGACTCCTCGTCCATTAAAGGATGTCATTCTTATTTCTTATGAGATCATTCACAAGAAGGATCCTACAG CTGCGCAGAGGATAAAACAGAAGGAAGTGTATGAGCAGCAGAAGGAATTGATTTTACTTGGAGAGAGGGTTGTACTTGCC ACTTTAGGGTTTGACCTGAATGTTCAACATCCATATAAACCCCTTGTAGAGGCTATAAAGAAGTTCAGTGTTGCAAAGAA TGCCCTTGCACAAGTTGCATGGAACTTTGTTAATGATGGACTGAGGACATCGCTCTGCCTGCAATTTAAGCCACATCATA TTGCGGCAGGTGCCATTTTCCTTGCTGCTAAGTTCCTTAGAGTGAAGCTTCCATTAGATGGTGAGAAGGTTTGGTGGCAA GAGTTCGATGTCACCCCACGCCAATTGGAAGAAGTTAGCAATCAAATGTTGGAACTCTACGAGCAGAATAGAATTCCACA ATCACAAGGAAGTGAAATGGAGGGAAGTGCTGGTGGGGGAACAAGAGCTGCTATAAAGGCTCCTGCAGCAAATGAGGAAC AGGCCTCAAAACAGGTTTCATCTCATCCAACCCCCCCGCACTCTGTTGACAATGATGCGGTACCATCAAGAGGAACTGAA AACCAGAGCAATGATGGGAGTACAGAAATGGGCAGTGACATTACTGATCACAAGATGGACTCGGAGATCAGGGAGTCTCA GAACTCAGAACAGTTACCTCAGAAAGATAAGAGAGAAGCGGAAAATGGTTCTAGATCTGGGGCTGAACGAATAGTTCCGG GAAGCCAGGATAAAATGGTTGGGACAAAGGAGGCTGTAGAAGTAGGAGGGAGGGACGATAGCTGCGATGTTGGTCGAAAT CTAGAGCTTCGGGAAGGTCCACTTAATCACTCACCAAAAGAAGCTATCAAGATGATTGATAAAGACAAGGTGAAGGCTGC CTTAGAAAAAAGGAGAAGGGAACGGGCTGAAATGACAATTAAGAGAGATGTAATAGATGAGGATGATCTCATTGAGCAGG AGCTAGAAGATGGAGTTGAATTAGCAGTTGAGAACGAGAAAAATAAGCGAGAGAGAAAACAGAACTGGTCCAAGCCTGAT GATGAAGATCATGGTAAAGACCATGAGGGAACTACAGATGATAGACACGTGAGCGTGAAAGGGCAATTAAAGAAAGACAT GGATGGAGAAAATGCAGAAGAAGGGGAGATGATAGATGACGCTTCATCCTTTTTGAACCGCAAGAGAAAGATAGAGAGCC CTCCTTCTAGGGAACCAGAGATGAAAAAGCGGCTTGGTTCTAGTTATCAGAATGATCATGCTGAAGAAGGAAACGGGGAG GCCAGAGTTGGTTATGCAGATGGCGACGCATAA
Protein sequence (LotjaGi4g1v0086100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAALVAGELSHHGVSDDKQEEALGRWYMSRKEIEEHSPSRKDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIF CHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDPTAAQRIKQKEVYEQQKELILLGERVVLA TLGFDLNVQHPYKPLVEAIKKFSVAKNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLRVKLPLDGEKVWWQ EFDVTPRQLEEVSNQMLELYEQNRIPQSQGSEMEGSAGGGTRAAIKAPAANEEQASKQVSSHPTPPHSVDNDAVPSRGTE NQSNDGSTEMGSDITDHKMDSEIRESQNSEQLPQKDKREAENGSRSGAERIVPGSQDKMVGTKEAVEVGGRDDSCDVGRN LELREGPLNHSPKEAIKMIDKDKVKAALEKRRRERAEMTIKRDVIDEDDLIEQELEDGVELAVENEKNKRERKQNWSKPD DEDHGKDHEGTTDDRHVSVKGQLKKDMDGENAEEGEMIDDASSFLNRKRKIESPPSREPEMKKRLGSSYQNDHAEEGNGE ARVGYADGDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 481 | 472 | 3.5E-248 | ||
| PANTHER | 10 | 481 | 472 | 3.5E-248 | – | |
| PIRSF | 20 | 498 | 479 | 7.1E-66 | – | |
| SUPERFAMILY | 23 | 168 | 146 | 4.73E-41 | ||
| Gene3D | 24 | 166 | 143 | 5.3E-50 | – | |
| Pfam | 27 | 167 | 141 | 1.9E-20 | ||
| CDD | 52 | 123 | 72 | 4.29486E-15 | ||
| SMART | 58 | 160 | 103 | 1.4E-8 | ||
| CDD | 167 | 260 | 94 | 1.19376E-7 | ||
| Gene3D | 168 | 274 | 107 | 7.4E-35 | – | |
| SUPERFAMILY | 169 | 265 | 97 | 2.89E-32 | ||
| SMART | 173 | 258 | 86 | 1.2E-6 | ||
| MobiDBLite | 263 | 409 | 147 | - | – | |
| MobiDBLite | 293 | 307 | 15 | - | – | |
| MobiDBLite | 314 | 330 | 17 | - | – | |
| MobiDBLite | 331 | 365 | 35 | - | – | |
| MobiDBLite | 384 | 400 | 17 | - | – | |
| MobiDBLite | 459 | 570 | 112 | - | – | |
| MobiDBLite | 460 | 511 | 52 | - | – | |
| MobiDBLite | 520 | 562 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0086100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…