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LotjaGi4g1v0087900.2

Overview

Field Value
Gene ID LotjaGi4g1v0087900
Transcript ID LotjaGi4g1v0087900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT1G13860.1 QUASIMODO2 LIKE 1; Swiss-Prot: sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4; TrEMBL-Plants: tr|A0A151UBA2|A0A151UBA2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0087900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:11659397..11665089) extracted from Lotus japonicus Gifu genome v1.2.

AGCTCCTCCTCCTGGTTCAACAAAACAACCAGCCCTAAACCACCGCTGAGTTGGTTAATCATGAGCCTGATTACTCTCCT AGCTCTGGTTGCACTTTTGCGTTCTTCTTCTTCTTCATCATCTTCCGATGACATTGATTCCGCGGCGCCGCGGAGACCGG CGTCGCTTATCTACACGAACTATAGGAGGATTAAGGAGCGTGCAGCTGTGGATTATTTGGAGTTGAGGTCCGGCGGAGGC GCGAGGCAGAAGGAGCTAGAGCTTTGTGGGAAGGAGAGGGAGAATTTCGTGCCGTGTCACAATGTGTCTGCGAATTTGTT GTTGGGGTTGAAAGAAGGGGAGGAGTTTGATCGGCACTGTCGGGTGGCGACGCCAGTGGAGAGGTGTTTGGTTCGGCCTC CCAAGGAGTATAAGATCCCGCTGCGGTGGCCTACTGGTAGGGATGTTATATGGAGCGGGAATGTGAAGATTACCAAAGAT CAATTTCTTTCTTCTGGAACAATGACCAAGAGGTAGTTCCTTTGTCTTACTTCATTCATTCATTCATCATAGAGCCTCCT TAATTTGGATATTTATTTAACACGCAAATTTTCGAAAACAAAAAAGTGCTTTAGGTCCAACATTGGTGATTCTAGTAGCT TGGCAATTAATGAAATTGTGGAAAATTGTATGAAAATGGACCTGATGCAGTTGAGTTTGGACCACAATTTTTATAAGGGT CTTCATTGTTTTGAGACCCTAATCACAATTTGAGACCCTTATTCAATTTGAGACTTGAGTGGTTATTCATGTTATTTTAT TTTTATTCGGGATAAAAGACTCGTTGAATTAAGTGTTAGAAGTCCACATTGGCTAGAGATATGACATAGATAGCCTTTAT AAGGGTAGAGCAACCCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTTAGGCCTCCCAAATTCTAATATTAAGCAACATA TCTTTTTTCAGTTCTTTCTCTGTCGTGATTCATGATTTTAATTTTTTTAACTTTCTGTAATTTCGTGATGTTTATCTAGG TTGATGCTGCTAGAAGAGAATCAAATTGCCTTTCACTCGGAGGATGGGTTGATCTTTGACGGAGTGAAAGATTATTCTCG TCAACTTGCTGAGATGATAGGGTTAGGAAGTGACACTGAGTTTCATCAAGCTGGTGTAAGCTTTTCATATATCATAATCC ACGATTGATAGTACTATTGTGCTATTTAGCTGCCTATATTCTCTTTCTGATTCTCATTGAAAACCATGTGCTTTTTATTG CTTAATATATCTGACTGATCTTCTATATTGATCACATTATAACAGGTTCGAACTATACTAGATATTAATTGTGGATTTGG GAGCTTTGGAGCTCATTTGTTGTCACTGAAAATTATGGCTGTTTGTATTGCCACGTATGAGGCAACTGGCAGCCAAGTCC AATTGTCTCTTGAGAGAGGACTTCCTGCTATGATTGGCAACTTTATTTCACGACAGCTTCCATATCCATCATTATCATAT GACATGGTTCATTGTGCTCAATGCGGCATCATTTGGGATGAAAAAAGTAATTATATAGTTAATGCACATTACTCTTTCAT TCTTAGTTCAGACTTTATAAAGTTCAATCCATAGTTTTTCAGTTGCTACCTTTTATGCTGATGAATAGTCATATGTTATA TGTTTGTGTTTTTTTAATTTACCTCATAGTATTTGTCAAAAATTGTATTTGATGACAAATATAAAGAAAAGACCGAGTAA GAAGCACAATATGTGGCTTTGTAGTCTGTGAAGCTAAATAAGTATGGTTAGGCTATTATTTGTCTAAGCTCAAATTAGTA TTGAGTTATCAGTATCACTAAATATTATTGACCTTCACCTTACTGCTCAAGGGTATATTTGTTTGAACTTTAGTTTGAAA ACATGATTCTATGATACAATTTTTTAAAAATTTCATAAGCCGTGTTTTTAGCTTGTGAGGCTTGTTTTTATGGTTTTTAT ACTTCATTATTTCACAACTTATTATTATGAATTTTGTAAACACATTTTTTCATTAAGTCTAAGAGATTACTTTTTCCTTA AGAAATGCACAAAAAAAGGGGCCCTGTGCTTATGGGATAATTGATCCTTGACATGTTATTAGTAAGTCCCATCTTTGTCA ACCCATTCTTTCTGGTTTCTCTAAATTTAGCATAAGATATAGTTGGCCTTCATATTATCCACTCTTCCAGAATAAAGAAT TCATCCATGAAGGGATGTGTTAACAAATATATATTTATTATTGTCCTCCTAATTGCTAATTGCTATAAGATTTGATTTGA AATAGTTGATAGTAGATAGTCATCAGTTTCTTACTATTTTTTTTTTTTGGATAGAATCTCATATAGCCTTTATGTATTTT ATGTTTATTTATCTTCTAGAAGCAGATTCAATATTTTGGTAATAATCTAACCGGGAGTGGATATCATAAAGCTAAGATTC AAATGACTTTTAAATGAGAACAAAACCGATGGATTGGATCCATGTGTCTAAACTACAGAACAGATTGTATTATATACAAT AGGCAAAATAATTACATAAGATCATTGCTTCCTTATTTACAATGAATACGTTACCTGATTACATTTATTACAAGATATTA TACCTATTCACATAATTTCCAACACCCCCCTCAAGCTTGAGTATTTATGTCATATGCACCAAGCTTGTTCAAATGTAGTT ACCTCAAGGACCTCTCAATGACTTGGTAAAAACATCAGTCAGCTGATCATTTGAATTGACGAATCTAGTACTGATATCCA GATAAAATCTTCTATCTTATAAAAAATGGAAGTCAATCTCAATGTGTTTGGCCCTCATGGAAAACTAGATTTTGGGCATG TGTAGGGCTGCCTTATTGTCTCAAGTGTGTGTTATCAGTGAAACATCCCCAAATCTCAGGTCTTGAAGCAACTATTTGAC AAGTGGCTGTAGCCATGACTCGAAATTCAGCTTCGGCTCTTGATCTTGCCACTATAATTGTTTCTTTACTCTTCCAGGAG ATTAAGTTATCACTAAGAAAAACAAAAAAAAAAAACAGAGATGGATCTCCTATGAGAGGGAGAACTTGCCCAATCTGCAT CTGAGTCTCCTTCATCTTGTGTATAGCCCTTCTAAGGCTTGGATGACCTATCTGAGCAATGAGGAGAGGAGAATCCACCA CCGAGGCAGCATGAGCAGAAGTCTAAAGGCTTGGATGACTCATACTAACTGTTACCAAACAAAGTCATGGTTAAAATAGA TGTCTGAAATGTTTGTATGAGGATGTGACCCCTTTTCTTCCATTTCCTCCATATATTTGCCATGTCCTTTTACACGAAAC ATCCTTCCATGATTTTTCTATACCATATTGATTATTGTTTAGTTTCTGTATGAACTGCTGTTCTCTGCTCTCTAACATTG ACCTCATCCTACAGAAGGAAAGTTTCTAATAGAAGTTGATCGTGTTCTTAAACCTGGAGGGTATTTTGTTTTAACCTCAC CAACAAGCAGGCCGCAGGGTTCACGGGAGAAAACAAGAATTATATTGAATCCAATTGAAGAGCTGACCCAGCAACTCTGC TGGACTCTTCTTGCTCAGCAAGATGAGACTTTCATCTGGCAGAAGGCTGCTAGTGTTGATTGTTACGCATCTCGGTAAGG ATATTTGTATAAACAGGTGATATGAAATAGTCAATAGACAGTTTACTACTTCTAGTTGTGATGTTGGCTTATCAATTGAA CATTTACTACTATAATATAGCTTCTTTGTGACATTTGTTTCTTAATTGTAGCAAGAAGCGTGCTATAAAGCTATGTGAAG ATGAGGATAATGTTCAATCATATTATAAGCCTCTTGTACATTGTATAAGTGGGACCTCTAGCAGGCGTTGGATTGCAATA CAAAACAGATCCTCTGGATCTGAGTTGAGCTCAGAAGAACTTAAAATTCATGGTAATTGTTGTTTTTAAACAGCTTTCTG TTTATGTTCTCCTTGCTTCTCCAAAATTTCATTCCTTTTTTTTTCTGCTATGCCTTTTCATGAATTTCTCTTTATTATTG CAGGAGTTCAGCCTGAAGAGTTTTATGAAGATACACAATTCTGGAGATCAGCTGTGAAGAATTATTGGTCATTGCTTACA CCTCTAATTTTCTCTGACCATCCTAAAAGACCTGGAGATGAAGATCCACTTCCTCCATATAACATGATCCGGAATGTTAT GGACATGAGTGCTAATTATGGGGGTTTGAATGCTGCCCTATTGGAGGAGAAAAAATCTGTGTGGGTCATGAATGTTGTTC CTGCAAGTGATTCTAATGCACTTCCTCTAATACTAGATAGAGGTTTTGCTGGTGTTATGCACGATTGGTAAGCTACTATT TGTTCATAATCTTGAGCATGTTTGTTGTGTGTGATTATGAACTAATAATTGATAAAGACCATTGAGGGTAATAAACTGAT AATACCACTAAAGCCTGATAAATGTAGTTTTCTTACCTTAACATTACCTCACTCGTAAGACAAACAACAGCACAGTTGTG TATGCTAGTTGGCAAAATAACTGTAATTTTGTTGATTACTCCAAAAGATATATGTTCCTGATAGTTTTACTGCTGAAAAT GATTTAGTGGTGTTTGTTAAGTATGTGCTAAATAATTCCAGTGGAACTCCTTTTTAGTAAATTATTCAATGACTGTAGTT TCAATTATTGTAGACTCACAAGTTTCATATTGTTCGAACAATTTCCTTTAATAGACATTGTACAGGTTTAATGCGGAGAT TTCAGTACCAAATATTCAGTTTTTTTTGTCAACCACACCCATTGCTTTATTAGTTTTGATTTCCCTTTGGGAATGAAATT GAATATAAATGTAGCATGCATGCATGTTGTACTATTAAATTGAAACTACCTAACTTAGTTTATTGCAAAACCAGTTCTCA AGTACCATCAGCTTGTTTGGAGTTCCATATCTAAATTCTCTTATTCTTTGGAGTTCATTGACTCACCTCTTTTGTAGAAT AATGCTGGTGCATATGAGCCTCCAGATAATTCAATTTTGTATATGACTATTGATACTGATCTTCAGGTGCGAACCTTTCC CCACCTACCCCCGAACATATGACATGCTTCACGCACATGGACTTCTCTCACATCTCACTACTAAGAGGTGCCGAATGATA GACTTATTCTTGGAGATGGATAGAATACTGCGTCCAGAGGTATGATGTTCCTACTTAGGTTCATTTTCATGATTGTTGGT GCTGGGAAGTTCCATCATTGATTTTTGCTGGATGTAACAAAACAGTAATCTGGCACCTTTCATCCTCTTCTTTTCTGAAC GATAATCATCATATGATTCTTTTTAAGCCATTTGACTCTAATAATGCATGCTCATTGACTGTTGTGATGCACACCTGAAA TAGTTTACTGGATTTGTGTGTTTTTAGTACAAGTAGTTGCCAGTCTCAGTTTGTAGGAATGGTCTTTGAAGCCAAATTTT TTTATAACATATATTTTCTCTAGGGATGGATCATTATTTCTGATACAATGGGAACAATAGAGATGGCTCGCACAGTTGCA ACACAAGTACGCTGGGAAGCAAGGGTAATTGATCTTCAGAATGGCAGCGACCAACGGCTACTTGTTTGCCAGAAACCATT TGTCAAAAAATAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0087900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCCTGATTACTCTCCTAGCTCTGGTTGCACTTTTGCGTTCTTCTTCTTCTTCATCATCTTCCGATGACATTGATTC CGCGGCGCCGCGGAGACCGGCGTCGCTTATCTACACGAACTATAGGAGGATTAAGGAGCGTGCAGCTGTGGATTATTTGG AGTTGAGGTCCGGCGGAGGCGCGAGGCAGAAGGAGCTAGAGCTTTGTGGGAAGGAGAGGGAGAATTTCGTGCCGTGTCAC AATGTGTCTGCGAATTTGTTGTTGGGGTTGAAAGAAGGGGAGGAGTTTGATCGGCACTGTCGGGTGGCGACGCCAGTGGA GAGGTGTTTGGTTCGGCCTCCCAAGGAGTATAAGATCCCGCTGCGGTGGCCTACTGGTAGGGATGTTATATGGAGCGGGA ATGTGAAGATTACCAAAGATCAATTTCTTTCTTCTGGAACAATGACCAAGAGGTTGATGCTGCTAGAAGAGAATCAAATT GCCTTTCACTCGGAGGATGGGTTGATCTTTGACGGAGTGAAAGATTATTCTCGTCAACTTGCTGAGATGATAGGGTTAGG AAGTGACACTGAGTTTCATCAAGCTGGTGTTCGAACTATACTAGATATTAATTGTGGATTTGGGAGCTTTGGAGCTCATT TGTTGTCACTGAAAATTATGGCTGTTTGTATTGCCACGTATGAGGCAACTGGCAGCCAAGTCCAATTGTCTCTTGAGAGA GGACTTCCTGCTATGATTGGCAACTTTATTTCACGACAGCTTCCATATCCATCATTATCATATGACATGGTTCATTGTGC TCAATGCGGCATCATTTGGGATGAAAAAAAAGGAAAGTTTCTAATAGAAGTTGATCGTGTTCTTAAACCTGGAGGGTATT TTGTTTTAACCTCACCAACAAGCAGGCCGCAGGGTTCACGGGAGAAAACAAGAATTATATTGAATCCAATTGAAGAGCTG ACCCAGCAACTCTGCTGGACTCTTCTTGCTCAGCAAGATGAGACTTTCATCTGGCAGAAGGCTGCTAGTGTTGATTGTTA CGCATCTCGCAAGAAGCGTGCTATAAAGCTATGTGAAGATGAGGATAATGTTCAATCATATTATAAGCCTCTTGTACATT GTATAAGTGGGACCTCTAGCAGGCGTTGGATTGCAATACAAAACAGATCCTCTGGATCTGAGTTGAGCTCAGAAGAACTT AAAATTCATGGAGTTCAGCCTGAAGAGTTTTATGAAGATACACAATTCTGGAGATCAGCTGTGAAGAATTATTGGTCATT GCTTACACCTCTAATTTTCTCTGACCATCCTAAAAGACCTGGAGATGAAGATCCACTTCCTCCATATAACATGATCCGGA ATGTTATGGACATGAGTGCTAATTATGGGGGTTTGAATGCTGCCCTATTGGAGGAGAAAAAATCTGTGTGGGTCATGAAT GTTGTTCCTGCAAGTGATTCTAATGCACTTCCTCTAATACTAGATAGAGGTTTTGCTGGTGTTATGCACGATTGGTGCGA ACCTTTCCCCACCTACCCCCGAACATATGACATGCTTCACGCACATGGACTTCTCTCACATCTCACTACTAAGAGGTGCC GAATGATAGACTTATTCTTGGAGATGGATAGAATACTGCGTCCAGAGGGATGGATCATTATTTCTGATACAATGGGAACA ATAGAGATGGCTCGCACAGTTGCAACACAAGTACGCTGGGAAGCAAGGGTAATTGATCTTCAGAATGGCAGCGACCAACG GCTACTTGTTTGCCAGAAACCATTTGTCAAAAAATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0087900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLITLLALVALLRSSSSSSSSDDIDSAAPRRPASLIYTNYRRIKERAAVDYLELRSGGGARQKELELCGKERENFVPCH NVSANLLLGLKEGEEFDRHCRVATPVERCLVRPPKEYKIPLRWPTGRDVIWSGNVKITKDQFLSSGTMTKRLMLLEENQI AFHSEDGLIFDGVKDYSRQLAEMIGLGSDTEFHQAGVRTILDINCGFGSFGAHLLSLKIMAVCIATYEATGSQVQLSLER GLPAMIGNFISRQLPYPSLSYDMVHCAQCGIIWDEKKGKFLIEVDRVLKPGGYFVLTSPTSRPQGSREKTRIILNPIEEL TQQLCWTLLAQQDETFIWQKAASVDCYASRKKRAIKLCEDEDNVQSYYKPLVHCISGTSSRRWIAIQNRSSGSELSSEEL KIHGVQPEEFYEDTQFWRSAVKNYWSLLTPLIFSDHPKRPGDEDPLPPYNMIRNVMDMSANYGGLNAALLEEKKSVWVMN VVPASDSNALPLILDRGFAGVMHDWCEPFPTYPRTYDMLHAHGLLSHLTTKRCRMIDLFLEMDRILRPEGWIIISDTMGT IEMARTVATQVRWEARVIDLQNGSDQRLLVCQKPFVKK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK
SignalP-noTM
1 18 18 - –
SignalP_GRAM_NEGATIVE
SignalP-noTM
1 22 22 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 - –
Phobius
SIGNAL_PEPTIDE
1 22 22 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 20 20 - –
PANTHER
PTHR10108
2 598 597 0.0
IPR004159
PANTHER
PTHR10108:SF1083
2 598 597 0.0 –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 13 11 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 22 9 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
23 598 576 - –
Pfam
PF03141
75 593 519 2.5E-139
IPR004159
SUPERFAMILY
SSF53335
108 302 195 1.0E-22
IPR029063
Gene3D
G3DSA:3.40.50.150
168 341 174 1.2E-11 –
CDD
cd02440
199 297 99 6.60431E-5 –
Gene3D
G3DSA:3.40.50.150
408 589 182 4.0E-5 –
SUPERFAMILY
SSF53335
408 565 158 4.18E-10
IPR029063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0087900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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