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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0088300 |
| Transcript ID | LotjaGi4g1v0088300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G26610.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q39092|ZAT1_ARATH Zinc finger protein ZAT1; TrEMBL-Plants: tr|A0A0L9THI2|A0A0L9THI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0088300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11713503..11715904) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGTTTTGGTGTGACATGTCATGTATAAGCCTACACTCCAGAGATCCTCAAAACGACCTCAAATCTTGGCCGTTAAA TGATCTCCCACACGTGCCGCCTATCACTCCTTTTCTGTTTGTTTGCTAAGCTAATCTACTTGCCTTCATGCATGGAATTC TCCTCCAACTACATAGAAAGAGTCATCATCATCGTCATGCTTATTAGCTAGTAGCAAGTGGCAGCAACCCCATTTCTTCT AAATCTGATTTTATTTTTTGTTTTCCTTTTTCACTCCACCCCTATTAAATTTTGATCAGTATTATTCTACTTGGTAACGC AAATTAAGGGGTCTCTCCCCTTTTTGTGGGTCGGATCTTGTACTTATACAACTCAGTCTCACATCTCATCATCTTCATTC TCTTCTCTTCTCATCATGAATTTGTGATCTGAATTTGTTATGATCATGGAATATATGTTTGTGATATAGTTTGCTTCTCA AGATCAGATTCACATCATACCAAATTCATGGAGAGGAGATATGTGTGCAGGTACTGCTTCAAGAGGTTTCCTTGTGGGAA GTCTCTTGGTGGTCACATCAGGACCCATATGACTCAAGAAAGAAATGATCATAATAATGATAATGCTGCTGCAGCTGATA GTGACATGCTCAAGTTGGATATTGGTGAGATCAGAATGAAGCAGCAGAACAAGAAGAGAGATTTGTCATGGTCTCAAACT GGGAGCAGTAGTACTACAATTTATGGTCTCAGAGAGAATCCCAAGAAAACAATGAGGTTTTTGCATCCTGATCATCATGT TGCCACCACCACCTTGGAACAGGATGAGAAGTTCTGCAAAGAATGTGGGAAAGGCTTCCCTTCATTGAAAGCTCTCTGTG GTCACATGGCTAGCCACTCTGACAAACACAAATCTGAAGAAGAGATTGAGAAACTTGTTCTAGTGGATAGTCAATCTGAT ACTACTGAGACTTGTAATTCAACACCTCAGAGGAGATCCAAGAGAATGAAGAGGTTCAAGTCTCTTAACCCTTCTTCCTC TGTTGTTGATTGTTCTTCACCTGTGTCAGAGGTTGAGCAGGAGCAGGAAGAGGTAGCTATGTGCTTGATGCTGTTGTCCA GAGATTCTAGTCACAGGTTTCATTTCGTTTCTGAATCTTCTGATAACAACTCAGTTGTTCTAGAGCATAGATCATTCTCT CCTTATGGTAACAACTTTGTCTCTAATCAACTTAAGGAGAAGAAGCTTCTAATCAATGATGTCAAGCTTAAGTCTTTTGA TAATTCAGATTCTAGATATTACAGATATGGTTCCAAAACCAAAATGGCAGACTATGATGATGTTTCAAATGATGAACTTA AGTGGTCAAAGGTAGGAGAAAAGTCTGGATTTGATGAGGAACATGATTTTGAACTGAATAGGGGAAGAAGCAAATATGCA ACTCTATATAAGAAATTAATGTTGGAGGATTTGGAGTATGATAGATCAGATGAAACTTCAAGGAAGTTTGATTCAAGAAA AAGAGCTCAAAATTTTGTTGGCAATTCTATCAAGAAGACAGCTAATGGTTTCACCAATGATGAAGAAATCTATGAGTTCT TGGATGGTGAAAGAGACAGTGACCTTTATTCAACAAATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCTTTTACTGCT CCAAGGTCTCAAAATGGAAAGAAGACCAACAATACTAAGAAGAAGAAGTTGAAGACAAAGAAAAGCAAGGAACATGAGTG CCCAATCTGCTACAGAATTTTCAAGTCAGGACAAGCATTAGGGGGGCATAAAAGATCCCATTTCATTGGAGGTAATAACT CTCAAGAAAACAATAACACTTTGGTGATTAAACAAGGTGCTGTTCCTTGCCTCATTGATCTCAATTTACCTGCTCCTGAT GATGATTAAAGTAAACAAACATTCTGGTGATTTGGAATGAGGTACCTGAATGACTGAATGTCTCGAATTCTTAGAATGAT TTGTCATTATCTCCCCCATATGATGAAAGCAATTGCAATGTACAGACAGCCATGTGGGTAAAATGATTTTTTGTTCTTAA CATTTTGTGTCCTTTATTTGGTAGGTGGTAGCTGTTTTTCCTTTCACTTTAATGGAACATGACAATTTGCTACTCTCTCA ATTCAAGATTTTGTTTCTTCCTACATCCAACAATTTTATCAGAATTTCATTTCTTTGCTGGGAATTATGATAGGTTCACT TTTCTCTGATTCAGTTATATATTCAATTACTATTCAGTATGTTTATCTTTTCATGTTCTGCTTTTCTGGGGATTTCCAAA TTTTCACATCCTCTGTGGAAATGTAGAACTACATCTTGTCAGTGGTATTCATTTATCTAAATAATACTAGTTCCATTTTC AC
CDS sequence (LotjaGi4g1v0088300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGAGATATGTGTGCAGGTACTGCTTCAAGAGGTTTCCTTGTGGGAAGTCTCTTGGTGGTCACATCAGGACCCA TATGACTCAAGAAAGAAATGATCATAATAATGATAATGCTGCTGCAGCTGATAGTGACATGCTCAAGTTGGATATTGGTG AGATCAGAATGAAGCAGCAGAACAAGAAGAGAGATTTGTCATGGTCTCAAACTGGGAGCAGTAGTACTACAATTTATGGT CTCAGAGAGAATCCCAAGAAAACAATGAGGTTTTTGCATCCTGATCATCATGTTGCCACCACCACCTTGGAACAGGATGA GAAGTTCTGCAAAGAATGTGGGAAAGGCTTCCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTAGCCACTCTGACAAAC ACAAATCTGAAGAAGAGATTGAGAAACTTGTTCTAGTGGATAGTCAATCTGATACTACTGAGACTTGTAATTCAACACCT CAGAGGAGATCCAAGAGAATGAAGAGGTTCAAGTCTCTTAACCCTTCTTCCTCTGTTGTTGATTGTTCTTCACCTGTGTC AGAGGTTGAGCAGGAGCAGGAAGAGGTAGCTATGTGCTTGATGCTGTTGTCCAGAGATTCTAGTCACAGGTTTCATTTCG TTTCTGAATCTTCTGATAACAACTCAGTTGTTCTAGAGCATAGATCATTCTCTCCTTATGGTAACAACTTTGTCTCTAAT CAACTTAAGGAGAAGAAGCTTCTAATCAATGATGTCAAGCTTAAGTCTTTTGATAATTCAGATTCTAGATATTACAGATA TGGTTCCAAAACCAAAATGGCAGACTATGATGATGTTTCAAATGATGAACTTAAGTGGTCAAAGGTAGGAGAAAAGTCTG GATTTGATGAGGAACATGATTTTGAACTGAATAGGGGAAGAAGCAAATATGCAACTCTATATAAGAAATTAATGTTGGAG GATTTGGAGTATGATAGATCAGATGAAACTTCAAGGAAGTTTGATTCAAGAAAAAGAGCTCAAAATTTTGTTGGCAATTC TATCAAGAAGACAGCTAATGGTTTCACCAATGATGAAGAAATCTATGAGTTCTTGGATGGTGAAAGAGACAGTGACCTTT ATTCAACAAATGAGAGTGATGAAAACAGTTCAGAGAGTGATTCTTTTACTGCTCCAAGGTCTCAAAATGGAAAGAAGACC AACAATACTAAGAAGAAGAAGTTGAAGACAAAGAAAAGCAAGGAACATGAGTGCCCAATCTGCTACAGAATTTTCAAGTC AGGACAAGCATTAGGGGGGCATAAAAGATCCCATTTCATTGGAGGTAATAACTCTCAAGAAAACAATAACACTTTGGTGA TTAAACAAGGTGCTGTTCCTTGCCTCATTGATCTCAATTTACCTGCTCCTGATGATGATTAA
Protein sequence (LotjaGi4g1v0088300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERRYVCRYCFKRFPCGKSLGGHIRTHMTQERNDHNNDNAAAADSDMLKLDIGEIRMKQQNKKRDLSWSQTGSSSTTIYG LRENPKKTMRFLHPDHHVATTTLEQDEKFCKECGKGFPSLKALCGHMASHSDKHKSEEEIEKLVLVDSQSDTTETCNSTP QRRSKRMKRFKSLNPSSSVVDCSSPVSEVEQEQEEVAMCLMLLSRDSSHRFHFVSESSDNNSVVLEHRSFSPYGNNFVSN QLKEKKLLINDVKLKSFDNSDSRYYRYGSKTKMADYDDVSNDELKWSKVGEKSGFDEEHDFELNRGRSKYATLYKKLMLE DLEYDRSDETSRKFDSRKRAQNFVGNSIKKTANGFTNDEEIYEFLDGERDSDLYSTNESDENSSESDSFTAPRSQNGKKT NNTKKKKLKTKKSKEHECPICYRIFKSGQALGGHKRSHFIGGNNSQENNNTLVIKQGAVPCLIDLNLPAPDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 473 | 472 | 1.8E-133 | – | |
| SUPERFAMILY | 2 | 31 | 30 | 3.47E-5 | ||
| PANTHER | 2 | 473 | 472 | 1.8E-133 | – | |
| Pfam | 4 | 29 | 26 | 1.1E-4 | – | |
| ProSiteProfiles | 5 | 32 | 28 | 9.993 | ||
| SMART | 5 | 27 | 23 | 1.0 | ||
| ProSitePatterns | 7 | 27 | 21 | - | ||
| ProSiteProfiles | 108 | 135 | 28 | 9.785 | ||
| SMART | 108 | 130 | 23 | 0.063 | ||
| SUPERFAMILY | 109 | 438 | 330 | 1.03E-6 | ||
| Pfam | 110 | 132 | 23 | 1.8E-7 | – | |
| ProSitePatterns | 110 | 130 | 21 | - | ||
| MobiDBLite | 151 | 170 | 20 | - | – | |
| MobiDBLite | 372 | 411 | 40 | - | – | |
| MobiDBLite | 377 | 398 | 22 | - | – | |
| SMART | 416 | 438 | 23 | 0.42 | ||
| ProSiteProfiles | 416 | 438 | 23 | 8.891 | ||
| Pfam | 416 | 438 | 23 | 3.0E-9 | – | |
| ProSitePatterns | 418 | 438 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0088300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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