Transcript — View — Lotus Base

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LotjaGi4g1v0088500.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0088500
Transcript ID	LotjaGi4g1v0088500.1
Related isoforms 1	LotjaGi4g1v0088500.2
Lotus japonicus genome version	Gifu v1.2
Description	Remorin family protein; TAIR: AT1G69325.1 Remorin family protein; Swiss-Prot: sp\|Q9M2D8\|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr\|K7L3C1\|K7L3C1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0088500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:11772135..11775185) extracted from Lotus japonicus Gifu genome v1.2.

CCCCCCAACTGACAGAATATGACTATAATCTAGAAAAAGGTTCTCTTTTCCTAGGTTTCTTCCCCTTTCAAATAAGCACC AAACACTTATCACTTGATATTAAAGCATTGCTGATGAAAAGGAAGTTGGAGAAAAAATTCTTCCTGTAGAATGGAGAATT TTATGAATCAGATAAGGTTAGTAATTCATACTTTTCATCCTTTAAAAATATTGGATAGTAACACATGCATCATGTGTTGC AATTTTCATACCACTCATTTTGGATGATCTGCAAATTTTAATTTTAAATCTTAACAAAGAAAGAGGCTTTTGTTCCCATA CAACAATATTAACCATGCATATGTGCCAGATTGTGTTTTCTGTGTTATCAAGGCCAGTTTTGCAATATTTGAATGTATAG GGTTCCTGGTCAAGAATAACAGGATTAGCATATAAGTCAGAATGTTACAAACAAATTTTCATTTCCTTTTTACACAATCT TCTTTGTATATTATAGAAGTTTTTTAACAGAGCCTCCATGTGCATACAAAAACAATAACTGCATAAAGTAGTTTTTGCTT ACACAATTGAGTATTGTTTATGCTGAACACTTTCTGTTAGAGTAATATTAACTGGTGCAGAAGAGGAAGATAAAGCTGAT CTGGGTAGCAGCTGGGATCGGAAAATACCAATACAGAAAACCCCATCCTTCAAAGGTAATGTTGTTTTTCCCTCACATGG TTTATTATCATGATTAAGCACATAAATATAGAAAAGGGAAATGGAGGACTGAGAATTTATGAAATCCTGTCATCTTTACC ATAGTCAAGGGAGGAAACAACAAAAGCCTTTTTTTACATCTCAGTCGTTAGTACCAGTGTTATCAAATTAAATGTCCACT ATGGCATTGCCATGGATGAATCTCATGGTAGGTTTTGGGCTCTCCGTCATGGCTAATATCCCGCCTTAATCTGCCATATG GCGGATATTGTATCTTTTCAATCTTGCTTGGTTAAACTTATTTTTTTCTGAAAATAAGGTTGGAATGATAAATATAAAAG TCAATACATGGTGGGAAACTAACACCTTATTAACATGCAATAATTTATACAAGGGAAACAAGTGAGAATTTCTCTTTGAT GAGGCTATTGATTTGCTTACTAGTTCTGACTTAAAATAGAACGAGGGAATCAGTTAATTAATAAACAAAACAAACTTCCA CAGATAAGAAAGAGAAGAAAAAAGCTCAGAACTGGTTTCCAAGACAATTTTCAAGGAAAATGAGTCGTGATTATGACTCC ATAGAAATGGAGCATGCCACAGCAGTAGCTGCTGCTGCATTCGCAATAATCTCACAAGAAAAAGAAATGATTGATCCCCG TGAGATCTCAATGACCAGGACCAAAAGCAAGGTTGATGCTAAAAAACCTCCAATATTATCCCACCTTGGTAGTGTATCCA AGAGATTCTCAGGTAATTGAGAACATGAACAAAACACTTGAGTGGTAATTTATATTTTATACCTTGTTGAGAAAGAAAAA AAAACACTCACATTTATGGTGATCTGCATCTGAATCATATATGTAGGTTCATTTAAAACCACTGATGACCAAGGTAGTTA CAAGGTGCCAATATCCCCTGCTACAGAACAAAAGAAGCCTGAAAAGACCTTCACCCCTGCACCTTCAATGAAAAAGGCTT TAACATTTAGTGAAAAATTCCAAAGCACTGATAAAAAACCTGAGACCTCAGTACCCAAAAAGACTCCAAGTTTTAGTGAT CAGCATTTGATGAACACTGATGATATAAAACCTAAGACCCCAGTACTCAAAAAGACTCCAACTTTTAGTGATCCGTATTT GATGGACACTGATGATATAAAACCTGAGGCTGAGACCCCAAAACCAGAAGTTCCACGGTGGTCAATGCCACCACCGCCAC CACCACCAATCAGGCAGACCTCAACCCCTGCAAGAGTACCACCAACTGGACAGACTCTACCAAGACCAGGTACTAGTGAA GCAAAAGCAGATGCTTGGCTGAGGGAAGAGCTTAAAAATATCAAAGAGAGGTAGGCACATGGCAATTGCATGACATTGAC ATTGTAGCAAATTAATTAGAGAATATGTTCTCAATTGCATTACATTGACATTGACAATCCCTGGCTTCATGCAATGATTC TCAGGTATGAAAAGTTGTTAGAGACAATAGATTCATGGGAAAAGAGGAAGAGGATGAAAGCCAGACGGAAGCTAAACAAG CATGAGGTGAGATTTTTTTCTCAATTCAACCTTACTTTGTTTAGCTAAAAATATAATTCTACACAGATATATAAAGAGTA ACAATTATTTGAAGACTAGGTGGGTACTAATTTATATAACTCTTTCTTTTAATGCATGTAAATCTAGAAGTTTAAATGTA TTCCTCTCACATTTTGATATATGCAGCAAAGTGACAATGAGCGGAAAAGGGCGAAAGCAATGAGGAAATATCAAGATAAG ATGAAATATATAGATGAGATTGCAGGGGGAGCGAGAGCACAATCACATGAAAGGTTAAGGAATGAAGAGCTCAGAGCAAA AGAGAAGGCAAATAAAATTAGAACAACAGGCAAGCTTCCAGGGGTGTGCTCATGCTTCTAATAAAAACCACCAATTGTGT ATGTAACATATGAGTTTGGGAACAAACTAAAATCTGTAATTATTTGGTTTCACAACTCTATTATCTGACATGTACATGTA GCTCTACCTGCTCATTTGAAGTTTGATCATTTTCACTTTATGTAAATAAGTTCCAGATTTCCTGGTTTCTTGCTTTCATC TGTTGAAATTCATGGACAATTTACCACACTTGGTTTCAGAAAGCCAGCAAAGATACATGGTATTAGTGAAGAAGAGTATT TAGGTTAACAAAATGTACTTAAATTTCTCCATTCCTAGTACTCAATCGTTTCAAAATGTTGCCGGTTATAGAACCTATTT GGGTTATATATGATTTAGTCCTTATTAGGAAAAATTGGATTAGGACCCTAAAAAACATTCATAGATTTTAATCTCCTACG TTAAGGGTCTG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0088500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAATTTTATGAATCAGATAAGAGTAATATTAACTGGTGCAGAAGAGGAAGATAAAGCTGATCTGGGTAGCAGCTG GGATCGGAAAATACCAATACAGAAAACCCCATCCTTCAAAGATAAGAAAGAGAAGAAAAAAGCTCAGAACTGGTTTCCAA GACAATTTTCAAGGAAAATGAGTCGTGATTATGACTCCATAGAAATGGAGCATGCCACAGCAGTAGCTGCTGCTGCATTC GCAATAATCTCACAAGAAAAAGAAATGATTGATCCCCGTGAGATCTCAATGACCAGGACCAAAAGCAAGGTTGATGCTAA AAAACCTCCAATATTATCCCACCTTGGTAGTGTATCCAAGAGATTCTCAGGTTCATTTAAAACCACTGATGACCAAGGTA GTTACAAGGTGCCAATATCCCCTGCTACAGAACAAAAGAAGCCTGAAAAGACCTTCACCCCTGCACCTTCAATGAAAAAG GCTTTAACATTTAGTGAAAAATTCCAAAGCACTGATAAAAAACCTGAGACCTCAGTACCCAAAAAGACTCCAAGTTTTAG TGATCAGCATTTGATGAACACTGATGATATAAAACCTAAGACCCCAGTACTCAAAAAGACTCCAACTTTTAGTGATCCGT ATTTGATGGACACTGATGATATAAAACCTGAGGCTGAGACCCCAAAACCAGAAGTTCCACGGTGGTCAATGCCACCACCG CCACCACCACCAATCAGGCAGACCTCAACCCCTGCAAGAGTACCACCAACTGGACAGACTCTACCAAGACCAGGTACTAG TGAAGCAAAAGCAGATGCTTGGCTGAGGGAAGAGCTTAAAAATATCAAAGAGAGGTATGAAAAGTTGTTAGAGACAATAG ATTCATGGGAAAAGAGGAAGAGGATGAAAGCCAGACGGAAGCTAAACAAGCATGAGCAAAGTGACAATGAGCGGAAAAGG GCGAAAGCAATGAGGAAATATCAAGATAAGATGAAATATATAGATGAGATTGCAGGGGGAGCGAGAGCACAATCACATGA AAGGTTAAGGAATGAAGAGCTCAGAGCAAAAGAGAAGGCAAATAAAATTAGAACAACAGGCAAGCTTCCAGGGGTGTGCT CATGCTTCTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0088500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENFMNQIRVILTGAEEEDKADLGSSWDRKIPIQKTPSFKDKKEKKKAQNWFPRQFSRKMSRDYDSIEMEHATAVAAAAF AIISQEKEMIDPREISMTRTKSKVDAKKPPILSHLGSVSKRFSGSFKTTDDQGSYKVPISPATEQKKPEKTFTPAPSMKK ALTFSEKFQSTDKKPETSVPKKTPSFSDQHLMNTDDIKPKTPVLKKTPTFSDPYLMDTDDIKPEAETPKPEVPRWSMPPP PPPPIRQTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKRKRMKARRKLNKHEQSDNERKR AKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVCSCF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31471 View details on PTHR31471 Search for proteins/transripts with this domain View external data on PTHR31471	3	374	372	3.1E-89	–
PANTHER	PTHR31471:SF51 View details on PTHR31471:SF51 Search for proteins/transripts with this domain View external data on PTHR31471:SF51	3	374	372	3.1E-89	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	123	271	149	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	123	139	17	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	232	250	19	-	–
Pfam	PF03763 View details on PF03763 Search for proteins/transripts with this domain View external data on PF03763	267	370	104	1.9E-25	IPR005516 Show description in modal box View details on IPR005516 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	279	299	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	301	326	26	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	308	326	19	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0088500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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