Transcript — View — Lotus Base

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LotjaGi4g1v0088500.2

Overview

Field	Value
Gene ID	LotjaGi4g1v0088500
Transcript ID	LotjaGi4g1v0088500.2
Related isoforms 1	LotjaGi4g1v0088500.1
Lotus japonicus genome version	Gifu v1.2
Description	Remorin family protein; TAIR: AT1G69325.1 Remorin family protein; Swiss-Prot: sp\|Q9M2D8\|Y3126_ARATH Uncharacterized protein At3g61260; TrEMBL-Plants: tr\|G7JHG5\|G7JHG5_MEDTR Carboxy-terminal region remorin; Found in the gene: LotjaGi4g1v0088500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:11772262..11775180) extracted from Lotus japonicus Gifu genome v1.2.

GGAGAAAAAATTCTTCCTGTAGAATGGAGAATTTTATGAATCAGATAAGGTTAGTAATTCATACTTTTCATCCTTTAAAA ATATTGGATAGTAACACATGCATCATGTGTTGCAATTTTCATACCACTCATTTTGGATGATCTGCAAATTTTAATTTTAA ATCTTAACAAAGAAAGAGGCTTTTGTTCCCATACAACAATATTAACCATGCATATGTGCCAGATTGTGTTTTCTGTGTTA TCAAGGCCAGTTTTGCAATATTTGAATGTATAGGGTTCCTGGTCAAGAATAACAGGATTAGCATATAAGTCAGAATGTTA CAAACAAATTTTCATTTCCTTTTTACACAATCTTCTTTGTATATTATAGAAGTTTTTTAACAGAGCCTCCATGTGCATAC AAAAACAATAACTGCATAAAGTAGTTTTTGCTTACACAATTGAGTATTGTTTATGCTGAACACTTTCTGTTAGAGTAATA TTAACTGGTGCAGAAGAGGAAGATAAAGCTGATCTGGGTAGCAGCTGGGATCGGAAAATACCAATACAGAAAACCCCATC CTTCAAAGGTAATGTTGTTTTTCCCTCACATGGTTTATTATCATGATTAAGCACATAAATATAGAAAAGGGAAATGGAGG ACTGAGAATTTATGAAATCCTGTCATCTTTACCATAGTCAAGGGAGGAAACAACAAAAGCCTTTTTTTACATCTCAGTCG TTAGTACCAGTGTTATCAAATTAAATGTCCACTATGGCATTGCCATGGATGAATCTCATGGTAGGTTTTGGGCTCTCCGT CATGGCTAATATCCCGCCTTAATCTGCCATATGGCGGATATTGTATCTTTTCAATCTTGCTTGGTTAAACTTATTTTTTT CTGAAAATAAGGTTGGAATGATAAATATAAAAGTCAATACATGGTGGGAAACTAACACCTTATTAACATGCAATAATTTA TACAAGGGAAACAAGTGAGAATTTCTCTTTGATGAGGCTATTGATTTGCTTACTAGTTCTGACTTAAAATAGAACGAGGG AATCAGTTAATTAATAAACAAAACAAACTTCCACAGATAAGAAAGAGAAGAAAAAAGCTCAGAACTGGTTTCCAAGACAA TTTTCAAGGAAAATGAGTCGTGATTATGACTCCATAGAAATGGAGCATGCCACAGCAGTAGCTGCTGCTGCATTCGCAAT AATCTCACAAGAAAAAGAAATGATTGATCCCCGTGAGATCTCAATGACCAGGACCAAAAGCAAGGTTGATGCTAAAAAAC CTCCAATATTATCCCACCTTGGTAGTGTATCCAAGAGATTCTCAGGTAATTGAGAACATGAACAAAACACTTGAGTGGTA ATTTATATTTTATACCTTGTTGAGAAAGAAAAAAAAACACTCACATTTATGGTGATCTGCATCTGAATCATATATGTAGG TTCATTTAAAACCACTGATGACCAAGGTAGTTACAAGGTGCCAATATCCCCTGCTACAGAACAAAAGAAGCCTGAAAAGA CCTTCACCCCTGCACCTTCAATGAAAAAGGCTTTAACATTTAGTGAAAAATTCCAAAGCACTGATAAAAAACCTGAGACC TCAGTACCCAAAAAGACTCCAAGTTTTAGTGATCAGCATTTGATGAACACTGATGATATAAAACCTAAGACCCCAGTACT CAAAAAGACTCCAACTTTTAGTGATCCGTATTTGATGGACACTGATGATATAAAACCTGAGGCTGAGACCCCAAAACCAG AAGTTCCACGGTGGTCAATGCCACCACCGCCACCACCACCAATCAGGCAGACCTCAACCCCTGCAAGAGTACCACCAACT GGACAGACTCTACCAAGACCAGGTACTAGTGAAGCAAAAGCAGATGCTTGGCTGAGGGAAGAGCTTAAAAATATCAAAGA GAGGTAGGCACATGGCAATTGCATGACATTGACATTGTAGCAAATTAATTAGAGAATATGTTCTCAATTGCATTACATTG ACATTGACAATCCCTGGCTTCATGCAATGATTCTCAGGTATGAAAAGTTGTTAGAGACAATAGATTCATGGGAAAAGAGG AAGAGGATGAAAGCCAGACGGAAGCTAAACAAGCATGAGGTGAGATTTTTTTCTCAATTCAACCTTACTTTGTTTAGCTA AAAATATAATTCTACACAGATATATAAAGAGTAACAATTATTTGAAGACTAGGTGGGTACTAATTTATATAACTCTTTCT TTTAATGCATGTAAATCTAGAAGTTTAAATGTATTCCTCTCACATTTTGATATATGCAGCAAAGTGACAATGAGCGGAAA AGGGCGAAAGCAATGAGGAAATATCAAGATAAGATGAAATATATAGATGAGATTGCAGGGGGAGCGAGAGCACAATCACA TGAAAGGTTAAGGAATGAAGAGCTCAGAGCAAAAGAGAAGGCAAATAAAATTAGAACAACAGGCAAGCTTCCAGGGGTGT GCTCATGCTTCTAATAAAAACCACCAATTGTGTATGTAACATATGAGTTTGGGAACAAACTAAAATCTGTAATTATTTGG TTTCACAACTCTATTATCTGACATGTACATGTAGCTCTACCTGCTCATTTGAAGTTTGATCATTTTCACTTTATGTAAAT AAGTTCCAGATTTCCTGGTTTCTTGCTTTCATCTGTTGAAATTCATGGACAATTTACCACACTTGGTTTCAGAAAGCCAG CAAAGATACATGGTATTAGTGAAGAAGAGTATTTAGGTTAACAAAATGTACTTAAATTTCTCCATTCCTAGTACTCAATC GTTTCAAAATGTTGCCGGTTATAGAACCTATTTGGGTTATATATGATTTAGTCCTTATTAGGAAAAATTGGATTAGGACC CTAAAAAACATTCATAGATTTTAATCTCCTACGTTAAGG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0088500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTCGTGATTATGACTCCATAGAAATGGAGCATGCCACAGCAGTAGCTGCTGCTGCATTCGCAATAATCTCACAAGA AAAAGAAATGATTGATCCCCGTGAGATCTCAATGACCAGGACCAAAAGCAAGGTTGATGCTAAAAAACCTCCAATATTAT CCCACCTTGGTAGTGTATCCAAGAGATTCTCAGGTTCATTTAAAACCACTGATGACCAAGGTAGTTACAAGGTGCCAATA TCCCCTGCTACAGAACAAAAGAAGCCTGAAAAGACCTTCACCCCTGCACCTTCAATGAAAAAGGCTTTAACATTTAGTGA AAAATTCCAAAGCACTGATAAAAAACCTGAGACCTCAGTACCCAAAAAGACTCCAAGTTTTAGTGATCAGCATTTGATGA ACACTGATGATATAAAACCTAAGACCCCAGTACTCAAAAAGACTCCAACTTTTAGTGATCCGTATTTGATGGACACTGAT GATATAAAACCTGAGGCTGAGACCCCAAAACCAGAAGTTCCACGGTGGTCAATGCCACCACCGCCACCACCACCAATCAG GCAGACCTCAACCCCTGCAAGAGTACCACCAACTGGACAGACTCTACCAAGACCAGGTACTAGTGAAGCAAAAGCAGATG CTTGGCTGAGGGAAGAGCTTAAAAATATCAAAGAGAGGTATGAAAAGTTGTTAGAGACAATAGATTCATGGGAAAAGAGG AAGAGGATGAAAGCCAGACGGAAGCTAAACAAGCATGAGCAAAGTGACAATGAGCGGAAAAGGGCGAAAGCAATGAGGAA ATATCAAGATAAGATGAAATATATAGATGAGATTGCAGGGGGAGCGAGAGCACAATCACATGAAAGGTTAAGGAATGAAG AGCTCAGAGCAAAAGAGAAGGCAAATAAAATTAGAACAACAGGCAAGCTTCCAGGGGTGTGCTCATGCTTCTAA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0088500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRDYDSIEMEHATAVAAAAFAIISQEKEMIDPREISMTRTKSKVDAKKPPILSHLGSVSKRFSGSFKTTDDQGSYKVPI SPATEQKKPEKTFTPAPSMKKALTFSEKFQSTDKKPETSVPKKTPSFSDQHLMNTDDIKPKTPVLKKTPTFSDPYLMDTD DIKPEAETPKPEVPRWSMPPPPPPPIRQTSTPARVPPTGQTLPRPGTSEAKADAWLREELKNIKERYEKLLETIDSWEKR KRMKARRKLNKHEQSDNERKRAKAMRKYQDKMKYIDEIAGGARAQSHERLRNEELRAKEKANKIRTTGKLPGVCSCF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31471:SF51 View details on PTHR31471:SF51 Search for proteins/transripts with this domain View external data on PTHR31471:SF51	1	315	315	1.6E-68	–
PANTHER	PTHR31471 View details on PTHR31471 Search for proteins/transripts with this domain View external data on PTHR31471	1	315	315	1.6E-68	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	63	80	18	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	63	212	150	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	173	191	19	-	–
Pfam	PF03763 View details on PF03763 Search for proteins/transripts with this domain View external data on PF03763	208	311	104	1.4E-25	IPR005516 Show description in modal box View details on IPR005516 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	220	240	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	242	267	26	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	249	267	19	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0088500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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